data_D9K
# 
_chem_comp.id                                    D9K 
_chem_comp.name                                  "~{N}-[(3~{S})-1,1-bis(oxidanylidene)thian-3-yl]-2-methyl-pyridin-3-amine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H16 N2 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-01-11 
_chem_comp.pdbx_modified_date                    2018-05-25 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        240.322 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     D9K 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6FGI 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
D9K O10 O1  O 0 1 N N N -41.584 39.801 -19.491 -2.906 0.682  1.516  O10 D9K 1  
D9K C15 C1  C 0 1 Y N N -33.290 40.497 -21.869 4.464  1.046  0.481  C15 D9K 2  
D9K C14 C2  C 0 1 Y N N -34.400 41.312 -22.016 3.301  1.782  0.608  C14 D9K 3  
D9K C12 C3  C 0 1 N N N -39.183 39.342 -19.533 -1.519 -1.118 0.169  C12 D9K 4  
D9K C01 C4  C 0 1 N N N -34.440 37.751 -19.695 3.304  -2.308 -0.477 C01 D9K 5  
D9K C02 C5  C 0 1 Y N N -34.431 39.029 -20.526 3.290  -0.852 -0.090 C02 D9K 6  
D9K C03 C6  C 0 1 Y N N -35.583 39.793 -20.628 2.079  -0.179 0.013  C03 D9K 7  
D9K N04 N1  N 0 1 N N N -36.797 39.384 -19.949 0.876  -0.842 -0.239 N04 D9K 8  
D9K C05 C7  C 0 1 N N S -38.087 39.691 -20.546 -0.395 -0.122 -0.127 C05 D9K 9  
D9K C06 C8  C 0 1 N N N -38.231 38.827 -22.012 -0.679 0.610  -1.436 C06 D9K 10 
D9K C07 C9  C 0 1 N N N -39.732 39.114 -22.773 -1.858 1.565  -1.272 C07 D9K 11 
D9K C08 C10 C 0 1 N N N -40.881 39.484 -21.821 -3.156 0.771  -1.113 C08 D9K 12 
D9K S09 S1  S 0 1 N N N -40.593 39.063 -20.279 -3.070 -0.206 0.419  S09 D9K 13 
D9K O11 O2  O 0 1 N N N -40.709 37.602 -20.272 -4.148 -1.132 0.429  O11 D9K 14 
D9K C13 C11 C 0 1 Y N N -35.580 40.956 -21.382 2.082  1.167  0.372  C13 D9K 15 
D9K N16 N2  N 0 1 Y N N -33.326 39.398 -21.143 4.428  -0.227 0.139  N16 D9K 16 
D9K H1  H1  H 0 1 N N N -32.369 40.770 -22.363 5.417  1.522  0.659  H1  D9K 17 
D9K H2  H2  H 0 1 N N N -34.347 42.210 -22.614 3.342  2.824  0.889  H2  D9K 18 
D9K H3  H3  H 0 1 N N N -38.885 38.441 -18.977 -1.630 -1.803 -0.671 H3  D9K 19 
D9K H4  H4  H 0 1 N N N -39.306 40.181 -18.833 -1.278 -1.682 1.070  H4  D9K 20 
D9K H5  H5  H 0 1 N N N -33.446 37.282 -19.731 3.370  -2.395 -1.562 H5  D9K 21 
D9K H6  H6  H 0 1 N N N -34.693 37.994 -18.652 4.164  -2.798 -0.021 H6  D9K 22 
D9K H7  H7  H 0 1 N N N -35.188 37.055 -20.101 2.388  -2.785 -0.130 H7  D9K 23 
D9K H8  H8  H 0 1 N N N -36.753 38.390 -19.846 0.882  -1.780 -0.489 H8  D9K 24 
D9K H9  H9  H 0 1 N N N -38.149 40.761 -20.792 -0.330 0.602  0.684  H9  D9K 25 
D9K H10 H10 H 0 1 N N N -38.138 37.751 -21.802 0.204  1.177  -1.729 H10 D9K 26 
D9K H11 H11 H 0 1 N N N -37.423 39.139 -22.690 -0.913 -0.119 -2.212 H11 D9K 27 
D9K H12 H12 H 0 1 N N N -39.600 39.940 -23.487 -1.702 2.185  -0.389 H12 D9K 28 
D9K H13 H13 H 0 1 N N N -40.019 38.202 -23.317 -1.930 2.204  -2.152 H13 D9K 29 
D9K H14 H14 H 0 1 N N N -41.034 40.572 -21.864 -4.000 1.459  -1.059 H14 D9K 30 
D9K H15 H15 H 0 1 N N N -41.794 38.972 -22.159 -3.282 0.103  -1.964 H15 D9K 31 
D9K H16 H16 H 0 1 N N N -36.468 41.565 -21.472 1.158  1.717  0.465  H16 D9K 32 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
D9K C07 C06 SING N N 1  
D9K C07 C08 SING N N 2  
D9K C14 C15 DOUB Y N 3  
D9K C14 C13 SING Y N 4  
D9K C06 C05 SING N N 5  
D9K C15 N16 SING Y N 6  
D9K C08 S09 SING N N 7  
D9K C13 C03 DOUB Y N 8  
D9K N16 C02 DOUB Y N 9  
D9K C03 C02 SING Y N 10 
D9K C03 N04 SING N N 11 
D9K C05 N04 SING N N 12 
D9K C05 C12 SING N N 13 
D9K C02 C01 SING N N 14 
D9K S09 O11 DOUB N N 15 
D9K S09 C12 SING N N 16 
D9K S09 O10 DOUB N N 17 
D9K C15 H1  SING N N 18 
D9K C14 H2  SING N N 19 
D9K C12 H3  SING N N 20 
D9K C12 H4  SING N N 21 
D9K C01 H5  SING N N 22 
D9K C01 H6  SING N N 23 
D9K C01 H7  SING N N 24 
D9K N04 H8  SING N N 25 
D9K C05 H9  SING N N 26 
D9K C06 H10 SING N N 27 
D9K C06 H11 SING N N 28 
D9K C07 H12 SING N N 29 
D9K C07 H13 SING N N 30 
D9K C08 H14 SING N N 31 
D9K C08 H15 SING N N 32 
D9K C13 H16 SING N N 33 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
D9K InChI            InChI                1.03  "InChI=1S/C11H16N2O2S/c1-9-11(5-2-6-12-9)13-10-4-3-7-16(14,15)8-10/h2,5-6,10,13H,3-4,7-8H2,1H3/t10-/m0/s1" 
D9K InChIKey         InChI                1.03  UTGFIRRMSACIPX-JTQLQIEISA-N                                                                                
D9K SMILES_CANONICAL CACTVS               3.385 "Cc1ncccc1N[C@H]2CCC[S](=O)(=O)C2"                                                                         
D9K SMILES           CACTVS               3.385 "Cc1ncccc1N[CH]2CCC[S](=O)(=O)C2"                                                                          
D9K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1c(cccn1)N[C@H]2CCCS(=O)(=O)C2"                                                                         
D9K SMILES           "OpenEye OEToolkits" 2.0.6 "Cc1c(cccn1)NC2CCCS(=O)(=O)C2"                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
D9K "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-[(3~{S})-1,1-bis(oxidanylidene)thian-3-yl]-2-methyl-pyridin-3-amine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
D9K "Create component" 2018-01-11 EBI  
D9K "Initial release"  2018-05-30 RCSB 
# 
