data_D1K
# 
_chem_comp.id                                    D1K 
_chem_comp.name                                  "3-(beta-D-glucopyranosyl)-6-propylfuro[2,3-d]pyrimidin-2(3H)-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H20 N2 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-04-12 
_chem_comp.pdbx_modified_date                    2012-07-20 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        340.329 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     D1K 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4EL0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
D1K N1     N1     N 0 1 N N N 34.115 23.509 28.832 -0.047 -0.154 -0.088 N1     D1K 1  
D1K C2     C2     C 0 1 N N N 33.493 24.161 29.863 0.225  -0.079 1.227  C2     D1K 2  
D1K O2     O2     O 0 1 N N N 32.266 24.282 29.948 -0.700 0.015  2.017  O2     D1K 3  
D1K N3     N3     N 0 1 N N N 34.258 24.741 30.848 1.471  -0.105 1.691  N3     D1K 4  
D1K C4     C4     C 0 1 N N N 35.571 24.210 30.989 2.500  -0.207 0.862  C4     D1K 5  
D1K C5     C5     C 0 1 N N N 36.226 23.881 29.778 2.253  -0.288 -0.533 C5     D1K 6  
D1K O5     O5     O 0 1 N N N 36.388 25.184 31.514 3.831  -0.257 1.028  O5     D1K 7  
D1K C6     C6     C 0 1 N N N 35.531 23.360 28.773 0.956  -0.259 -0.991 C6     D1K 8  
D1K C7     C7     C 0 1 N N N 37.534 23.908 30.098 3.579  -0.390 -1.158 C7     D1K 9  
D1K C8     C8     C 0 1 N N N 37.589 24.538 31.284 4.464  -0.365 -0.156 C8     D1K 10 
D1K C9     C9     C 0 1 N N N 38.901 24.872 31.955 5.959  -0.444 -0.328 C9     D1K 11 
D1K "C1'"  "C1'"  C 0 1 N N R 33.251 22.911 27.798 -1.438 -0.127 -0.546 "C1'"  D1K 12 
D1K C10    C10    C 0 1 N N N 39.596 23.693 32.634 6.545  0.969  -0.356 C10    D1K 13 
D1K C11    C11    C 0 1 N N N 41.053 24.178 32.932 8.063  0.888  -0.530 C11    D1K 14 
D1K "C2'"  "C2'"  C 0 1 N N R 33.742 23.132 26.388 -2.165 -1.377 -0.043 "C2'"  D1K 15 
D1K "O2'"  "O2'"  O 0 1 N N N 34.030 24.513 26.174 -1.555 -2.542 -0.600 "O2'"  D1K 16 
D1K "C3'"  "C3'"  C 0 1 N N S 32.653 22.541 25.443 -3.634 -1.312 -0.474 "C3'"  D1K 17 
D1K "O3'"  "O3'"  O 0 1 N N N 33.061 22.608 24.128 -4.337 -2.439 0.054  "O3'"  D1K 18 
D1K "C4'"  "C4'"  C 0 1 N N S 32.380 21.080 25.826 -4.257 -0.021 0.064  "C4'"  D1K 19 
D1K "O4'"  "O4'"  O 0 1 N N N 31.226 20.649 25.068 -5.606 0.086  -0.393 "O4'"  D1K 20 
D1K "C5'"  "C5'"  C 0 1 N N R 32.141 20.921 27.400 -3.449 1.176  -0.444 "C5'"  D1K 21 
D1K "O5'"  "O5'"  O 0 1 N N N 33.219 21.470 28.129 -2.087 1.038  -0.034 "O5'"  D1K 22 
D1K "C6'"  "C6'"  C 0 1 N N N 32.157 19.474 27.899 -4.028 2.467  0.139  "C6'"  D1K 23 
D1K "O6'"  "O6'"  O 0 1 N N N 33.185 18.682 27.241 -3.349 3.591  -0.425 "O6'"  D1K 24 
D1K H6     H6     H 0 1 N N N 36.014 22.850 27.953 0.742  -0.320 -2.048 H6     D1K 25 
D1K H7     H7     H 0 1 N N N 38.359 23.510 29.526 3.795  -0.470 -2.214 H7     D1K 26 
D1K H9     H9     H 0 1 N N N 39.582 25.276 31.191 6.392  -1.000 0.504  H9     D1K 27 
D1K H9A    H9A    H 0 1 N N N 38.708 25.640 32.718 6.191  -0.952 -1.264 H9A    D1K 28 
D1K "H1'"  "H1'"  H 0 1 N N N 32.236 23.326 27.889 -1.462 -0.107 -1.636 "H1'"  D1K 29 
D1K H10    H10    H 0 1 N N N 39.080 23.430 33.569 6.113  1.525  -1.188 H10    D1K 30 
D1K H10A   H10A   H 0 0 N N N 39.611 22.820 31.966 6.313  1.477  0.580  H10A   D1K 31 
D1K H11    H11    H 0 1 N N N 41.615 23.371 33.425 8.495  0.332  0.302  H11    D1K 32 
D1K H11A   H11A   H 0 0 N N N 41.550 24.447 31.988 8.295  0.380  -1.466 H11A   D1K 33 
D1K H11B   H11B   H 0 0 N N N 41.019 25.057 33.592 8.481  1.895  -0.550 H11B   D1K 34 
D1K "H2'"  "H2'"  H 0 1 N N N 34.660 22.543 26.247 -2.106 -1.419 1.045  "H2'"  D1K 35 
D1K "HO2'" "HO2'" H 0 0 N N N 34.338 24.639 25.284 -1.966 -3.373 -0.323 "HO2'" D1K 36 
D1K "H3'"  "H3'"  H 0 1 N N N 31.727 23.116 25.589 -3.695 -1.322 -1.563 "H3'"  D1K 37 
D1K "HO3'" "HO3'" H 0 0 N N N 32.386 22.244 23.568 -5.275 -2.462 -0.181 "HO3'" D1K 38 
D1K "H4'"  "H4'"  H 0 1 N N N 33.256 20.473 25.553 -4.241 -0.036 1.154  "H4'"  D1K 39 
D1K "HO4'" "HO4'" H 0 0 N N N 31.027 19.745 25.280 -6.175 -0.644 -0.112 "HO4'" D1K 40 
D1K "H5'"  "H5'"  H 0 1 N N N 31.186 21.398 27.667 -3.499 1.214  -1.532 "H5'"  D1K 41 
D1K "H6'"  "H6'"  H 0 1 N N N 32.348 19.474 28.982 -5.090 2.528  -0.099 "H6'"  D1K 42 
D1K "H6'A" "H6'A" H 0 0 N N N 31.176 19.019 27.699 -3.897 2.469  1.221  "H6'A" D1K 43 
D1K "HO6'" "HO6'" H 0 0 N N N 33.164 17.793 27.576 -3.666 4.445  -0.101 "HO6'" D1K 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
D1K N1    C2     SING N N 1  
D1K N1    C6     SING N N 2  
D1K N1    "C1'"  SING N N 3  
D1K C2    O2     DOUB N N 4  
D1K C2    N3     SING N N 5  
D1K N3    C4     DOUB N N 6  
D1K C4    C5     SING N N 7  
D1K C4    O5     SING N N 8  
D1K C5    C6     DOUB N N 9  
D1K C5    C7     SING N N 10 
D1K O5    C8     SING N N 11 
D1K C7    C8     DOUB N N 12 
D1K C8    C9     SING N N 13 
D1K C9    C10    SING N N 14 
D1K "C1'" "C2'"  SING N N 15 
D1K "C1'" "O5'"  SING N N 16 
D1K C10   C11    SING N N 17 
D1K "C2'" "O2'"  SING N N 18 
D1K "C2'" "C3'"  SING N N 19 
D1K "C3'" "O3'"  SING N N 20 
D1K "C3'" "C4'"  SING N N 21 
D1K "C4'" "O4'"  SING N N 22 
D1K "C4'" "C5'"  SING N N 23 
D1K "C5'" "O5'"  SING N N 24 
D1K "C5'" "C6'"  SING N N 25 
D1K "C6'" "O6'"  SING N N 26 
D1K C6    H6     SING N N 27 
D1K C7    H7     SING N N 28 
D1K C9    H9     SING N N 29 
D1K C9    H9A    SING N N 30 
D1K "C1'" "H1'"  SING N N 31 
D1K C10   H10    SING N N 32 
D1K C10   H10A   SING N N 33 
D1K C11   H11    SING N N 34 
D1K C11   H11A   SING N N 35 
D1K C11   H11B   SING N N 36 
D1K "C2'" "H2'"  SING N N 37 
D1K "O2'" "HO2'" SING N N 38 
D1K "C3'" "H3'"  SING N N 39 
D1K "O3'" "HO3'" SING N N 40 
D1K "C4'" "H4'"  SING N N 41 
D1K "O4'" "HO4'" SING N N 42 
D1K "C5'" "H5'"  SING N N 43 
D1K "C6'" "H6'"  SING N N 44 
D1K "C6'" "H6'A" SING N N 45 
D1K "O6'" "HO6'" SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
D1K SMILES           ACDLabs              12.01 "O=C1N=C3OC(=CC3=CN1C2OC(C(O)C(O)C2O)CO)CCC"                                                                                                           
D1K InChI            InChI                1.03  "InChI=1S/C15H20N2O7/c1-2-3-8-4-7-5-17(15(22)16-13(7)23-8)14-12(21)11(20)10(19)9(6-18)24-14/h4-5,9-12,14,18-21H,2-3,6H2,1H3/t9-,10-,11+,12-,14-/m1/s1" 
D1K InChIKey         InChI                1.03  XKVQKUGUMPARLW-YGEZULPYSA-N                                                                                                                            
D1K SMILES_CANONICAL CACTVS               3.370 "CCCC1=CC2=CN([C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3O)C(=O)N=C2O1"                                                                                   
D1K SMILES           CACTVS               3.370 "CCCC1=CC2=CN([CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O)C(=O)N=C2O1"                                                                                          
D1K SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCC1=CC2=CN(C(=O)N=C2O1)[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O"                                                                                 
D1K SMILES           "OpenEye OEToolkits" 1.7.6 "CCCC1=CC2=CN(C(=O)N=C2O1)C3C(C(C(C(O3)CO)O)O)O"                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
D1K "SYSTEMATIC NAME" ACDLabs              12.01 "3-(beta-D-glucopyranosyl)-6-propylfuro[2,3-d]pyrimidin-2(3H)-one"                                         
D1K "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "3-[(2R,3R,4S,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]-6-propyl-furo[2,3-d]pyrimidin-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
D1K "Create component" 2012-04-12 RCSB 
# 
