data_AGK
#

_chem_comp.id                                   AGK
_chem_comp.name                                 "(3R,4S,5R)-3-(hydroxymethyl)-1,2-diazinane-4,5-diol"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C5 H12 N2 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        AZA-GALACTO-FAGOMINE
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-03-17
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       148.160
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    AGK
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4UFI
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AGK  O2    O2    O  0  1  N  N  N  78.755  88.051  20.493   0.421   1.336  -1.098  O2    AGK   1  
AGK  C4    C4    C  0  1  N  N  S  79.074  89.388  20.156   0.339   0.900   0.261  C4    AGK   2  
AGK  C3    C3    C  0  1  N  N  R  77.883  90.273  20.485   1.589   0.090   0.615  C3    AGK   3  
AGK  O1    O1    O  0  1  N  N  N  77.533  90.140  21.860   2.755   0.881   0.374  O1    AGK   4  
AGK  C2    C2    C  0  1  N  N  N  76.699  89.893  19.615   1.635  -1.168  -0.255  C2    AGK   5  
AGK  N1    N1    N  0  1  N  N  N  77.160  90.139  18.226   0.408  -1.949  -0.046  N1    AGK   6  
AGK  C5    C5    C  0  1  N  N  R  79.417  89.467  18.672  -0.899   0.017   0.441  C5    AGK   7  
AGK  C6    C6    C  0  1  N  N  N  80.338  88.339  18.292  -2.149   0.799   0.033  C6    AGK   8  
AGK  O     O     O  0  1  N  N  N  81.125  88.692  17.175  -3.312   0.017   0.311  O     AGK   9  
AGK  N     N     N  0  1  N  N  N  78.195  89.232  17.890  -0.771  -1.178  -0.404  N     AGK  10  
AGK  H2    H2    H  0  1  N  N  N  79.493  87.488  20.291   1.186   1.896  -1.286  H2    AGK  11  
AGK  H4    H4    H  0  1  N  N  N  79.942  89.731  20.738   0.268   1.767   0.918  H4    AGK  12  
AGK  H3    H3    H  0  1  N  N  N  78.154  91.317  20.269   1.553  -0.194   1.667  H3    AGK  13  
AGK  H5    H5    H  0  1  N  N  N  79.868  90.441  18.430  -0.982  -0.284   1.485  H5    AGK  14  
AGK  H1    H1    H  0  1  N  N  N  76.788  90.697  22.053   3.586   0.429   0.577  H1    AGK  15  
AGK  H21C  H21C  H  0  0  N  N  N  76.438  88.834  19.756   1.710  -0.882  -1.304  H21C  AGK  16  
AGK  H22C  H22C  H  0  0  N  N  N  75.827  90.520  19.851   2.501  -1.770   0.021  H22C  AGK  17  
AGK  HA    HA    H  0  1  N  N  N  76.393  90.015  17.596   0.441  -2.818  -0.558  HA    AGK  18  
AGK  H     H     H  0  1  N  N  N  77.876  88.301  18.064  -0.757  -0.929  -1.382  H     AGK  19  
AGK  H61C  H61C  H  0  0  N  N  N  80.999  88.111  19.141  -2.194   1.731   0.597  H61C  AGK  20  
AGK  H62C  H62C  H  0  0  N  N  N  79.738  87.451  18.045  -2.106   1.021  -1.033  H62C  AGK  21  
AGK  HB    HB    H  0  1  N  N  N  81.699  87.969  16.950  -4.143   0.452   0.077  HB    AGK  22  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AGK  O2  C4    SING  N  N   1  
AGK  C4  C3    SING  N  N   2  
AGK  C4  C5    SING  N  N   3  
AGK  C3  O1    SING  N  N   4  
AGK  C3  C2    SING  N  N   5  
AGK  C2  N1    SING  N  N   6  
AGK  N1  N     SING  N  N   7  
AGK  C5  C6    SING  N  N   8  
AGK  C5  N     SING  N  N   9  
AGK  C6  O     SING  N  N  10  
AGK  O2  H2    SING  N  N  11  
AGK  C4  H4    SING  N  N  12  
AGK  C3  H3    SING  N  N  13  
AGK  C5  H5    SING  N  N  14  
AGK  O1  H1    SING  N  N  15  
AGK  C2  H21C  SING  N  N  16  
AGK  C2  H22C  SING  N  N  17  
AGK  N1  HA    SING  N  N  18  
AGK  N   H     SING  N  N  19  
AGK  C6  H61C  SING  N  N  20  
AGK  C6  H62C  SING  N  N  21  
AGK  O   HB    SING  N  N  22  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AGK  InChI             InChI                 1.03   "InChI=1S/C5H12N2O3/c8-2-3-5(10)4(9)1-6-7-3/h3-10H,1-2H2/t3-,4-,5+/m1/s1"  
AGK  InChIKey          InChI                 1.03   PPPMSBCQTLJPKM-WDCZJNDASA-N  
AGK  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1NNC[C@@H](O)[C@H]1O"  
AGK  SMILES            CACTVS                3.385  "OC[CH]1NNC[CH](O)[CH]1O"  
AGK  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C1[C@H]([C@H]([C@H](NN1)CO)O)O"  
AGK  SMILES            "OpenEye OEToolkits"  1.7.6  "C1C(C(C(NN1)CO)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          AGK
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.7.6
_pdbx_chem_comp_identifier.identifier       "(3R,4S,5R)-3-(hydroxymethyl)-1,2-diazinane-4,5-diol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AGK  "Create component"  2015-03-17  EBI   
AGK  "Initial release"   2015-03-25  RCSB  
AGK  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     AGK
_pdbx_chem_comp_synonyms.name        AZA-GALACTO-FAGOMINE
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
