data_9DK
# 
_chem_comp.id                                    9DK 
_chem_comp.name                                  "3-[2-(1~{H}-imidazol-4-yl)ethylamino]-2,2-dimethyl-3-oxidanylidene-propanoic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H15 N3 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-05-11 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        225.244 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9DK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5NX2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9DK C67 C1  C 0 1 N N N Y N Y -19.464 23.922 10.142 3.818  -0.535 0.118  C67 9DK 1  
9DK C69 C2  C 0 1 N N N N N N -20.257 24.871 11.093 2.742  0.501  -0.084 C69 9DK 2  
9DK C70 C3  C 0 1 N N N N N N -19.300 25.990 11.624 2.878  1.591  0.981  C70 9DK 3  
9DK C71 C4  C 0 1 N N N N N N -20.792 24.096 12.330 2.889  1.124  -1.473 C71 9DK 4  
9DK C72 C5  C 0 1 N N N N N N -21.472 25.487 10.338 1.389  -0.151 0.034  C72 9DK 5  
9DK C75 C6  C 0 1 N N N N N N -23.462 27.074 10.613 -1.046 -0.046 0.004  C75 9DK 6  
9DK C76 C7  C 0 1 N N N N N N -24.295 26.540 9.442  -2.138 1.005  -0.201 C76 9DK 7  
9DK C77 C8  C 0 1 Y N N N N N -24.961 25.242 9.785  -3.491 0.354  -0.083 C77 9DK 8  
9DK C78 C9  C 0 1 Y N N N N N -24.589 23.948 9.459  -4.483 0.733  0.746  C78 9DK 9  
9DK C80 C10 C 0 1 Y N N N N N -26.427 24.015 10.634 -5.139 -0.997 -0.423 C80 9DK 10 
9DK N74 N1  N 0 1 N N N N N N -22.267 26.326 11.031 0.270  0.587  -0.111 N74 9DK 11 
9DK N79 N2  N 0 1 Y N N N N N -25.554 23.160 10.021 -5.528 -0.124 0.531  N79 9DK 12 
9DK N81 N3  N 0 1 Y N N N N N -26.076 25.267 10.494 -3.922 -0.702 -0.789 N81 9DK 13 
9DK O68 O1  O 0 1 N N N Y N Y -19.947 22.860 9.743  3.516  -1.686 0.331  O68 9DK 14 
9DK O73 O2  O 0 1 N N N N N N -21.667 25.205 9.149  1.306  -1.340 0.260  O73 9DK 15 
9DK H2  H2  H 0 1 N N N N N N -19.856 26.661 12.295 3.857  2.062  0.896  H2  9DK 16 
9DK H3  H3  H 0 1 N N N N N N -18.467 25.529 12.175 2.100  2.340  0.835  H3  9DK 17 
9DK H4  H4  H 0 1 N N N N N N -18.904 26.567 10.775 2.774  1.147  1.971  H4  9DK 18 
9DK H5  H5  H 0 1 N N N N N N -21.346 24.785 12.984 2.792  0.347  -2.232 H5  9DK 19 
9DK H6  H6  H 0 1 N N N N N N -21.462 23.290 11.996 2.111  1.873  -1.619 H6  9DK 20 
9DK H7  H7  H 0 1 N N N N N N -19.947 23.664 12.886 3.868  1.595  -1.559 H7  9DK 21 
9DK H8  H8  H 0 1 N N N N N N -23.130 28.086 10.339 -1.150 -0.490 0.994  H8  9DK 22 
9DK H9  H9  H 0 1 N N N N N N -24.130 27.131 11.485 -1.142 -0.823 -0.755 H9  9DK 23 
9DK H10 H10 H 0 1 N N N N N N -23.635 26.385 8.576  -2.041 1.782  0.558  H10 9DK 24 
9DK H11 H11 H 0 1 N N N N N N -25.067 27.281 9.186  -2.033 1.449  -1.191 H11 9DK 25 
9DK H12 H12 H 0 1 N N N N N N -23.728 23.632 8.888  -4.457 1.555  1.446  H12 9DK 26 
9DK H13 H13 H 0 1 N N N N N N -27.306 23.693 11.172 -5.738 -1.804 -0.820 H13 9DK 27 
9DK H14 H14 H 0 1 N N N N N N -22.001 26.462 11.985 0.337  1.538  -0.292 H14 9DK 28 
9DK H15 H15 H 0 1 N N N N N N -25.610 22.162 9.990  -6.388 -0.107 0.980  H15 9DK 29 
9DK O1  O3  O 0 1 N Y N Y N Y -18.231 24.336 9.784  5.111  -0.181 0.056  O1  9DK 30 
9DK H1  H1  H 0 1 N Y N Y N Y -17.837 23.694 9.205  5.765  -0.880 0.192  H1  9DK 31 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9DK O73 C72 DOUB N N 1  
9DK C76 C77 SING N N 2  
9DK C76 C75 SING N N 3  
9DK C78 C77 DOUB Y N 4  
9DK C78 N79 SING Y N 5  
9DK O68 C67 DOUB N N 6  
9DK C77 N81 SING Y N 7  
9DK N79 C80 SING Y N 8  
9DK C67 C69 SING N N 9  
9DK C72 N74 SING N N 10 
9DK C72 C69 SING N N 11 
9DK N81 C80 DOUB Y N 12 
9DK C75 N74 SING N N 13 
9DK C69 C70 SING N N 14 
9DK C69 C71 SING N N 15 
9DK C70 H2  SING N N 16 
9DK C70 H3  SING N N 17 
9DK C70 H4  SING N N 18 
9DK C71 H5  SING N N 19 
9DK C71 H6  SING N N 20 
9DK C71 H7  SING N N 21 
9DK C75 H8  SING N N 22 
9DK C75 H9  SING N N 23 
9DK C76 H10 SING N N 24 
9DK C76 H11 SING N N 25 
9DK C78 H12 SING N N 26 
9DK C80 H13 SING N N 27 
9DK N74 H14 SING N N 28 
9DK N79 H15 SING N N 29 
9DK C67 O1  SING N N 30 
9DK O1  H1  SING N N 31 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9DK InChI            InChI                1.03  "InChI=1S/C10H15N3O3/c1-10(2,9(15)16)8(14)12-4-3-7-5-11-6-13-7/h5-6H,3-4H2,1-2H3,(H,11,13)(H,12,14)(H,15,16)" 
9DK InChIKey         InChI                1.03  OLRNECHDEZIYJP-UHFFFAOYSA-N                                                                                   
9DK SMILES_CANONICAL CACTVS               3.385 "CC(C)(C(O)=O)C(=O)NCCc1c[nH]cn1"                                                                             
9DK SMILES           CACTVS               3.385 "CC(C)(C(O)=O)C(=O)NCCc1c[nH]cn1"                                                                             
9DK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(C)(C(=O)NCCc1c[nH]cn1)C(=O)O"                                                                             
9DK SMILES           "OpenEye OEToolkits" 2.0.6 "CC(C)(C(=O)NCCc1c[nH]cn1)C(=O)O"                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           9DK 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "3-[2-(1~{H}-imidazol-4-yl)ethylamino]-2,2-dimethyl-3-oxidanylidene-propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9DK "Create component" 2017-05-11 EBI  
9DK "Initial release"  2017-06-14 RCSB 
9DK "Modify backbone"  2023-11-03 PDBE 
9DK "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            9DK 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain and backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               N-terminal 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
