data_8EK
# 
_chem_comp.id                                    8EK 
_chem_comp.name                                  "2-[3-[(5-cyano-6-oxidanylidene-4-thiophen-2-yl-1H-pyrimidin-2-yl)sulfanylmethyl]phenyl]ethanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H13 N3 O3 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-10-09 
_chem_comp.pdbx_modified_date                    2022-08-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        383.444 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8EK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7PWY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8EK C10 C1  C 0 1 Y N N 4.253  28.841 59.698 3.183  -0.757 2.119  C10 8EK 1  
8EK C11 C2  C 0 1 Y N N 4.540  27.502 59.235 4.545  -0.850 2.340  C11 8EK 2  
8EK C12 C3  C 0 1 Y N N 4.323  27.158 57.866 5.429  -0.663 1.295  C12 8EK 3  
8EK C13 C4  C 0 1 Y N N 3.812  28.128 56.918 4.952  -0.384 0.027  C13 8EK 4  
8EK C14 C5  C 0 1 Y N N 3.542  29.443 57.428 3.591  -0.293 -0.194 C14 8EK 5  
8EK C15 C6  C 0 1 N N N 3.135  29.189 54.618 6.284  1.284  -1.197 C15 8EK 6  
8EK O17 O1  O 0 1 N N N 4.034  29.920 54.151 5.811  2.073  -0.413 O17 8EK 7  
8EK C18 C7  C 0 1 N N N 10.604 31.278 61.018 -5.135 -0.650 -0.566 C18 8EK 8  
8EK C01 C8  C 0 1 N N N 9.109  31.380 61.006 -3.756 -0.994 -0.394 C01 8EK 9  
8EK C02 C9  C 0 1 N N N 8.449  32.661 60.421 -3.309 -2.324 -0.595 C02 8EK 10 
8EK C04 C10 C 0 1 N N N 6.213  31.641 60.956 -1.129 -1.614 -0.059 C04 8EK 11 
8EK C06 C11 C 0 1 N N N 8.267  30.351 61.504 -2.806 -0.017 -0.026 C06 8EK 12 
8EK C08 C12 C 0 1 N N N 3.420  31.322 59.259 1.222  -0.385 0.609  C08 8EK 13 
8EK C09 C13 C 0 1 Y N N 3.751  29.841 58.816 2.706  -0.485 0.851  C09 8EK 14 
8EK C21 C14 C 0 1 Y N N 8.869  28.983 62.138 -3.220 1.375  0.189  C21 8EK 15 
8EK C22 C15 C 0 1 Y N N 10.029 28.598 62.818 -2.393 2.402  0.545  C22 8EK 16 
8EK C23 C16 C 0 1 Y N N 10.115 27.145 63.199 -3.046 3.606  0.679  C23 8EK 17 
8EK C24 C17 C 0 1 Y N N 9.031  26.434 62.808 -4.362 3.566  0.440  C24 8EK 18 
8EK C26 C18 C 0 1 N N N 3.549  27.825 55.388 5.917  -0.175 -1.112 C26 8EK 19 
8EK N03 N1  N 0 1 N N N 6.965  32.723 60.429 -1.999 -2.599 -0.421 N03 8EK 20 
8EK N05 N2  N 0 1 N N N 6.795  30.531 61.455 -1.524 -0.371 0.127  N05 8EK 21 
8EK N19 N3  N 0 1 N N N 11.770 31.192 61.030 -6.229 -0.376 -0.703 N19 8EK 22 
8EK O16 O2  O 0 1 N N N 1.923  29.429 54.552 7.137  1.707  -2.143 O16 8EK 23 
8EK O20 O3  O 0 1 N N N 9.078  33.611 59.961 -4.091 -3.202 -0.918 O20 8EK 24 
8EK S07 S1  S 0 1 N N N 4.249  31.796 60.934 0.573  -2.013 0.159  S07 8EK 25 
8EK S25 S2  S 0 1 Y N N 7.935  27.496 62.004 -4.859 1.989  0.019  S25 8EK 26 
8EK H1  H1  H 0 1 N N N 4.423  29.089 60.735 2.492  -0.902 2.936  H1  8EK 27 
8EK H2  H2  H 0 1 N N N 4.919  26.762 59.924 4.917  -1.067 3.331  H2  8EK 28 
8EK H3  H3  H 0 1 N N N 4.544  26.155 57.531 6.493  -0.735 1.468  H3  8EK 29 
8EK H4  H4  H 0 1 N N N 3.160  30.184 56.741 3.219  -0.075 -1.184 H4  8EK 30 
8EK H5  H5  H 0 1 N N N 3.779  32.011 58.481 0.729  -0.035 1.516  H5  8EK 31 
8EK H6  H6  H 0 1 N N N 2.330  31.423 59.364 1.033  0.319  -0.201 H6  8EK 32 
8EK H7  H7  H 0 1 N N N 10.814 29.300 63.055 -1.332 2.281  0.707  H7  8EK 33 
8EK H8  H8  H 0 1 N N N 10.952 26.715 63.728 -2.535 4.515  0.956  H8  8EK 34 
8EK H9  H9  H 0 1 N N N 8.878  25.378 62.972 -5.020 4.420  0.500  H9  8EK 35 
8EK H10 H10 H 0 1 N N N 2.733  27.093 55.296 6.816  -0.767 -0.940 H10 8EK 36 
8EK H11 H11 H 0 1 N N N 4.463  27.414 54.935 5.450  -0.488 -2.046 H11 8EK 37 
8EK H12 H12 H 0 1 N N N 6.496  33.527 60.063 -1.675 -3.504 -0.554 H12 8EK 38 
8EK H13 H13 H 0 1 N N N 1.787  30.250 54.094 7.342  2.652  -2.159 H13 8EK 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8EK O17 C15 DOUB N N 1  
8EK O16 C15 SING N N 2  
8EK C15 C26 SING N N 3  
8EK C26 C13 SING N N 4  
8EK C13 C14 DOUB Y N 5  
8EK C13 C12 SING Y N 6  
8EK C14 C09 SING Y N 7  
8EK C12 C11 DOUB Y N 8  
8EK C09 C08 SING N N 9  
8EK C09 C10 DOUB Y N 10 
8EK C11 C10 SING Y N 11 
8EK C08 S07 SING N N 12 
8EK O20 C02 DOUB N N 13 
8EK C02 N03 SING N N 14 
8EK C02 C01 SING N N 15 
8EK N03 C04 SING N N 16 
8EK S07 C04 SING N N 17 
8EK C04 N05 DOUB N N 18 
8EK C01 C18 SING N N 19 
8EK C01 C06 DOUB N N 20 
8EK C18 N19 TRIP N N 21 
8EK N05 C06 SING N N 22 
8EK C06 C21 SING N N 23 
8EK S25 C21 SING Y N 24 
8EK S25 C24 SING Y N 25 
8EK C21 C22 DOUB Y N 26 
8EK C24 C23 DOUB Y N 27 
8EK C22 C23 SING Y N 28 
8EK C10 H1  SING N N 29 
8EK C11 H2  SING N N 30 
8EK C12 H3  SING N N 31 
8EK C14 H4  SING N N 32 
8EK C08 H5  SING N N 33 
8EK C08 H6  SING N N 34 
8EK C22 H7  SING N N 35 
8EK C23 H8  SING N N 36 
8EK C24 H9  SING N N 37 
8EK C26 H10 SING N N 38 
8EK C26 H11 SING N N 39 
8EK N03 H12 SING N N 40 
8EK O16 H13 SING N N 41 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8EK InChI            InChI                1.06  "InChI=1S/C18H13N3O3S2/c19-9-13-16(14-5-2-6-25-14)20-18(21-17(13)24)26-10-12-4-1-3-11(7-12)8-15(22)23/h1-7H,8,10H2,(H,22,23)(H,20,21,24)" 
8EK InChIKey         InChI                1.06  RJQYGCGMQYVVIB-UHFFFAOYSA-N                                                                                                               
8EK SMILES_CANONICAL CACTVS               3.385 "OC(=O)Cc1cccc(CSC2=NC(=C(C#N)C(=O)N2)c3sccc3)c1"                                                                                         
8EK SMILES           CACTVS               3.385 "OC(=O)Cc1cccc(CSC2=NC(=C(C#N)C(=O)N2)c3sccc3)c1"                                                                                         
8EK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)CSC2=NC(=C(C(=O)N2)C#N)c3cccs3)CC(=O)O"                                                                                       
8EK SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)CSC2=NC(=C(C(=O)N2)C#N)c3cccs3)CC(=O)O"                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           8EK 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-[3-[(5-cyano-6-oxidanylidene-4-thiophen-2-yl-1~{H}-pyrimidin-2-yl)sulfanylmethyl]phenyl]ethanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8EK "Create component"  2021-10-09 PDBE 
8EK "Initial release"   2022-04-20 RCSB 
8EK "Modify descriptor" 2022-08-22 RCSB 
# 
