data_88K
# 
_chem_comp.id                                    88K 
_chem_comp.name                                  "(3S,5R,8R,9R,10R,12R,13R,14R,17S)-4,4,8,10,14-pentamethyl-17-[(2R)-2,6,6-trimethyloxan-2-yl]-2,3,5,6,7,9,11,12,13,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthrene-3,12-diol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H52 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         Panaxadiol 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-11-30 
_chem_comp.pdbx_modified_date                    2022-12-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        460.732 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     88K 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7W3P 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
88K C1  C1  C 0 1 N N N -23.177 -12.967 -26.020 5.259  -1.512 -0.043 C1  88K 1  
88K C2  C2  C 0 1 N N N -23.735 -14.185 -25.309 6.462  -0.691 0.417  C2  88K 2  
88K C3  C3  C 0 1 N N N -23.666 -14.133 -23.804 6.375  0.729  -0.144 C3  88K 3  
88K C5  C4  C 0 1 N N R -24.152 -11.638 -24.120 3.875  0.550  -0.101 C5  88K 4  
88K C6  C5  C 0 1 N N N -22.877 -11.115 -23.463 3.596  0.837  -1.582 C6  88K 5  
88K C7  C6  C 0 1 N N S -25.234 -10.589 -24.053 2.658  1.028  0.695  C7  88K 6  
88K C8  C7  C 0 1 N N N -25.714 -10.304 -22.593 2.480  2.558  0.513  C8  88K 7  
88K C9  C8  C 0 1 N N N -26.102 -8.825  -22.546 1.044  2.761  -0.056 C9  88K 8  
88K C11 C9  C 0 1 N N R -24.960 -9.185  -24.590 1.379  0.420  0.115  C11 88K 9  
88K C12 C10 C 0 1 N N R -24.764 -8.881  -26.034 0.945  -0.924 0.646  C12 88K 10 
88K C13 C11 C 0 1 N N N -24.621 -7.381  -26.335 -0.395 -1.294 -0.025 C13 88K 11 
88K C14 C12 C 0 1 N N R -25.625 -6.428  -25.574 -1.432 -0.213 0.256  C14 88K 12 
88K C4  C13 C 0 1 N N N -24.521 -12.936 -23.378 5.081  1.370  0.356  C4  88K 13 
88K C10 C14 C 0 1 N N R -26.097 -8.316  -24.009 0.319  1.500  0.449  C10 88K 14 
88K C15 C15 C 0 1 N N R -25.698 -6.803  -24.098 -0.984 1.153  -0.253 C15 88K 15 
88K C16 C16 C 0 1 N N N -26.752 -5.940  -23.403 -2.045 2.217  0.031  C16 88K 16 
88K O1  O1  O 0 1 N N N -27.472 -1.571  -27.849 -6.956 -1.551 0.257  O1  88K 17 
88K C22 C17 C 0 1 N N S -27.236 -2.842  -27.232 -5.635 -1.178 0.668  C22 88K 18 
88K C21 C18 C 0 1 N N N -26.138 -3.560  -28.012 -4.660 -2.285 0.288  C21 88K 19 
88K C20 C19 C 0 1 N N N -25.802 -4.932  -27.436 -3.232 -1.877 0.646  C20 88K 20 
88K C23 C20 C 0 1 N N N -26.861 -2.719  -25.744 -5.274 0.159  0.020  C23 88K 21 
88K C24 C21 C 0 1 N N N -28.161 -2.221  -25.124 -6.088 1.240  0.776  C24 88K 22 
88K C25 C22 C 0 1 N N N -25.833 -1.699  -25.380 -5.746 0.182  -1.433 C25 88K 23 
88K C18 C23 C 0 1 N N R -26.647 -4.179  -25.250 -3.806 0.486  0.169  C18 88K 24 
88K C19 C24 C 0 1 N N R -25.473 -4.937  -25.940 -2.835 -0.636 -0.177 C19 88K 25 
88K C26 C25 C 0 1 N N N -24.119 -4.260  -25.743 -2.864 -1.024 -1.650 C26 88K 26 
88K C17 C26 C 0 1 N N N -26.653 -4.445  -23.727 -3.400 1.773  -0.543 C17 88K 27 
88K O2  O2  O 0 1 N N N -23.547 -9.517  -26.616 1.919  -1.921 0.310  O2  88K 28 
88K C27 C27 C 0 1 N N N -24.360 -6.426  -23.374 -0.720 1.142  -1.767 C27 88K 29 
88K C28 C28 C 0 1 N N N -27.451 -8.746  -24.650 0.126  1.628  1.963  C28 88K 30 
88K O   O3  O 0 1 N N N -23.905 -11.831 -25.541 4.038  -0.831 0.124  O   88K 31 
88K C   C29 C 0 1 N N N -21.650 -12.761 -26.056 5.458  -1.934 -1.505 C   88K 32 
88K C29 C30 C 0 1 N N N -23.445 -13.100 -27.494 5.217  -2.800 0.806  C29 88K 33 
88K H1  H1  H 0 1 N N N -24.791 -14.295 -25.598 6.479  -0.651 1.508  H1  88K 34 
88K H2  H2  H 0 1 N N N -23.169 -15.066 -25.646 7.381  -1.165 0.065  H2  88K 35 
88K H3  H3  H 0 1 N N N -24.067 -15.061 -23.372 7.228  1.311  0.218  H3  88K 36 
88K H4  H4  H 0 1 N N N -22.626 -13.995 -23.475 6.398  0.712  -1.230 H4  88K 37 
88K H5  H5  H 0 1 N N N -23.053 -10.965 -22.387 3.284  1.875  -1.698 H5  88K 38 
88K H6  H6  H 0 1 N N N -22.066 -11.845 -23.604 4.502  0.663  -2.163 H6  88K 39 
88K H7  H7  H 0 1 N N N -22.593 -10.158 -23.925 2.805  0.177  -1.937 H7  88K 40 
88K H8  H8  H 0 1 N N N -26.104 -10.980 -24.601 2.767  0.772  1.744  H8  88K 41 
88K H9  H9  H 0 1 N N N -26.583 -10.933 -22.349 2.585  3.070  1.466  H9  88K 42 
88K H10 H10 H 0 1 N N N -24.902 -10.507 -21.879 3.213  2.934  -0.202 H10 88K 43 
88K H11 H11 H 0 1 N N N -25.373 -8.261  -21.946 0.588  3.653  0.373  H11 88K 44 
88K H12 H12 H 0 1 N N N -27.105 -8.710  -22.108 1.073  2.819  -1.137 H12 88K 45 
88K H13 H13 H 0 1 N N N -24.045 -8.847  -24.082 1.524  0.343  -0.969 H13 88K 46 
88K H14 H14 H 0 1 N N N -25.641 -9.250  -26.586 0.822  -0.904 1.726  H14 88K 47 
88K H15 H15 H 0 1 N N N -23.598 -7.079  -26.065 -0.234 -1.412 -1.091 H15 88K 48 
88K H16 H16 H 0 1 N N N -24.773 -7.238  -27.415 -0.738 -2.241 0.396  H16 88K 49 
88K H17 H17 H 0 1 N N N -26.610 -6.706  -25.976 -1.501 -0.152 1.365  H17 88K 50 
88K H18 H18 H 0 1 N N N -24.384 -12.774 -22.299 5.096  1.417  1.447  H18 88K 51 
88K H19 H19 H 0 1 N N N -25.576 -13.169 -23.583 5.001  2.385  -0.041 H19 88K 52 
88K H20 H20 H 0 1 N N N -27.746 -6.295  -23.712 -2.164 2.370  1.101  H20 88K 53 
88K H21 H21 H 0 1 N N N -26.639 -6.066  -22.316 -1.752 3.156  -0.440 H21 88K 54 
88K H22 H22 H 0 1 N N N -28.154 -1.110  -27.375 -7.260 -2.392 0.627  H22 88K 55 
88K H23 H23 H 0 1 N N N -28.150 -3.450  -27.298 -5.635 -1.054 1.756  H23 88K 56 
88K H24 H24 H 0 1 N N N -25.230 -2.939  -27.993 -4.914 -3.187 0.866  H24 88K 57 
88K H25 H25 H 0 1 N N N -26.473 -3.688  -29.052 -4.751 -2.535 -0.763 H25 88K 58 
88K H26 H26 H 0 1 N N N -26.666 -5.593  -27.599 -3.172 -1.631 1.705  H26 88K 59 
88K H27 H27 H 0 1 N N N -24.931 -5.327  -27.979 -2.550 -2.692 0.414  H27 88K 60 
88K H28 H28 H 0 1 N N N -28.024 -2.090  -24.040 -5.813 1.228  1.831  H28 88K 61 
88K H29 H29 H 0 1 N N N -28.438 -1.258  -25.578 -5.870 2.221  0.354  H29 88K 62 
88K H30 H30 H 0 1 N N N -28.959 -2.956  -25.306 -7.152 1.029  0.675  H30 88K 63 
88K H31 H31 H 0 1 N N N -25.664 -1.720  -24.293 -6.820 0.001  -1.469 H31 88K 64 
88K H32 H32 H 0 1 N N N -24.891 -1.925  -25.902 -5.526 1.155  -1.872 H32 88K 65 
88K H33 H33 H 0 1 N N N -26.186 -0.700  -25.677 -5.228 -0.595 -1.995 H33 88K 66 
88K H34 H34 H 0 1 N N N -27.542 -4.707  -25.610 -3.645 0.690  1.261  H34 88K 67 
88K H35 H35 H 0 1 N N N -23.864 -4.253  -24.673 -3.804 -1.528 -1.874 H35 88K 68 
88K H36 H36 H 0 1 N N N -23.348 -4.813  -26.300 -2.778 -0.127 -2.264 H36 88K 69 
88K H37 H37 H 0 1 N N N -24.169 -3.226  -26.114 -2.032 -1.693 -1.866 H37 88K 70 
88K H38 H38 H 0 1 N N N -25.722 -4.049  -23.294 -4.126 2.565  -0.340 H38 88K 71 
88K H39 H39 H 0 1 N N N -27.515 -3.927  -23.280 -3.328 1.632  -1.613 H39 88K 72 
88K H40 H40 H 0 1 N N N -23.575 -10.454 -26.462 1.697  -2.808 0.624  H40 88K 73 
88K H41 H41 H 0 1 N N N -24.427 -6.702  -22.311 -1.663 1.019  -2.299 H41 88K 74 
88K H42 H42 H 0 1 N N N -23.525 -6.968  -23.841 -0.256 2.083  -2.062 H42 88K 75 
88K H43 H43 H 0 1 N N N -24.189 -5.343  -23.461 -0.053 0.315  -2.013 H43 88K 76 
88K H44 H44 H 0 1 N N N -28.264 -8.129  -24.239 1.074  1.897  2.429  H44 88K 77 
88K H45 H45 H 0 1 N N N -27.401 -8.607  -25.740 -0.613 2.401  2.171  H45 88K 78 
88K H46 H46 H 0 1 N N N -27.644 -9.805  -24.424 -0.220 0.677  2.367  H46 88K 79 
88K H47 H47 H 0 1 N N N -21.271 -12.642 -25.030 5.463  -1.048 -2.141 H47 88K 80 
88K H48 H48 H 0 1 N N N -21.173 -13.635 -26.524 6.409  -2.458 -1.605 H48 88K 81 
88K H49 H49 H 0 1 N N N -21.416 -11.859 -26.640 4.645  -2.594 -1.807 H49 88K 82 
88K H50 H50 H 0 1 N N N -24.521 -13.258 -27.659 4.390  -3.428 0.474  H50 88K 83 
88K H51 H51 H 0 1 N N N -23.126 -12.182 -28.009 6.155  -3.343 0.690  H51 88K 84 
88K H52 H52 H 0 1 N N N -22.884 -13.958 -27.893 5.076  -2.539 1.855  H52 88K 85 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
88K C21 C20 SING N N 1  
88K C21 C22 SING N N 2  
88K O1  C22 SING N N 3  
88K C29 C1  SING N N 4  
88K C20 C19 SING N N 5  
88K C22 C23 SING N N 6  
88K O2  C12 SING N N 7  
88K C13 C12 SING N N 8  
88K C13 C14 SING N N 9  
88K C   C1  SING N N 10 
88K C12 C11 SING N N 11 
88K C1  O   SING N N 12 
88K C1  C2  SING N N 13 
88K C19 C26 SING N N 14 
88K C19 C14 SING N N 15 
88K C19 C18 SING N N 16 
88K C23 C25 SING N N 17 
88K C23 C18 SING N N 18 
88K C23 C24 SING N N 19 
88K C14 C15 SING N N 20 
88K O   C5  SING N N 21 
88K C2  C3  SING N N 22 
88K C18 C17 SING N N 23 
88K C28 C10 SING N N 24 
88K C11 C7  SING N N 25 
88K C11 C10 SING N N 26 
88K C5  C7  SING N N 27 
88K C5  C6  SING N N 28 
88K C5  C4  SING N N 29 
88K C15 C10 SING N N 30 
88K C15 C16 SING N N 31 
88K C15 C27 SING N N 32 
88K C7  C8  SING N N 33 
88K C10 C9  SING N N 34 
88K C3  C4  SING N N 35 
88K C17 C16 SING N N 36 
88K C8  C9  SING N N 37 
88K C2  H1  SING N N 38 
88K C2  H2  SING N N 39 
88K C3  H3  SING N N 40 
88K C3  H4  SING N N 41 
88K C6  H5  SING N N 42 
88K C6  H6  SING N N 43 
88K C6  H7  SING N N 44 
88K C7  H8  SING N N 45 
88K C8  H9  SING N N 46 
88K C8  H10 SING N N 47 
88K C9  H11 SING N N 48 
88K C9  H12 SING N N 49 
88K C11 H13 SING N N 50 
88K C12 H14 SING N N 51 
88K C13 H15 SING N N 52 
88K C13 H16 SING N N 53 
88K C14 H17 SING N N 54 
88K C4  H18 SING N N 55 
88K C4  H19 SING N N 56 
88K C16 H20 SING N N 57 
88K C16 H21 SING N N 58 
88K O1  H22 SING N N 59 
88K C22 H23 SING N N 60 
88K C21 H24 SING N N 61 
88K C21 H25 SING N N 62 
88K C20 H26 SING N N 63 
88K C20 H27 SING N N 64 
88K C24 H28 SING N N 65 
88K C24 H29 SING N N 66 
88K C24 H30 SING N N 67 
88K C25 H31 SING N N 68 
88K C25 H32 SING N N 69 
88K C25 H33 SING N N 70 
88K C18 H34 SING N N 71 
88K C26 H35 SING N N 72 
88K C26 H36 SING N N 73 
88K C26 H37 SING N N 74 
88K C17 H38 SING N N 75 
88K C17 H39 SING N N 76 
88K O2  H40 SING N N 77 
88K C27 H41 SING N N 78 
88K C27 H42 SING N N 79 
88K C27 H43 SING N N 80 
88K C28 H44 SING N N 81 
88K C28 H45 SING N N 82 
88K C28 H46 SING N N 83 
88K C   H47 SING N N 84 
88K C   H48 SING N N 85 
88K C   H49 SING N N 86 
88K C29 H50 SING N N 87 
88K C29 H51 SING N N 88 
88K C29 H52 SING N N 89 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
88K InChI            InChI                1.03  "InChI=1S/C30H52O3/c1-25(2)13-9-14-30(8,33-25)19-10-16-29(7)24(19)20(31)18-22-27(5)15-12-23(32)26(3,4)21(27)11-17-28(22,29)6/h19-24,31-32H,9-18H2,1-8H3/t19-,20+,21-,22+,23-,24-,27-,28+,29+,30+/m0/s1" 
88K InChIKey         InChI                1.03  PVLHOJXLNBFHDX-XHJPDDKBSA-N                                                                                                                                                                             
88K SMILES_CANONICAL CACTVS               3.385 "CC1(C)CCC[C@@](C)(O1)[C@H]2CC[C@]3(C)[C@@H]2[C@H](O)C[C@@H]4[C@@]5(C)CC[C@H](O)C(C)(C)[C@@H]5CC[C@@]34C"                                                                                               
88K SMILES           CACTVS               3.385 "CC1(C)CCC[C](C)(O1)[CH]2CC[C]3(C)[CH]2[CH](O)C[CH]4[C]5(C)CC[CH](O)C(C)(C)[CH]5CC[C]34C"                                                                                                               
88K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@]1(CCCC(O1)(C)C)[C@H]2CC[C@@]3([C@@H]2[C@@H](C[C@H]4[C@]3(CC[C@@H]5[C@@]4(CC[C@@H](C5(C)C)O)C)C)O)C"                                                                                              
88K SMILES           "OpenEye OEToolkits" 2.0.7 "CC1(CCCC(O1)(C)C2CCC3(C2C(CC4C3(CCC5C4(CCC(C5(C)C)O)C)C)O)C)C"                                                                                                                                         
# 
_pdbx_chem_comp_identifier.comp_id           88K 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(3~{S},5~{R},8~{R},9~{R},10~{R},12~{R},13~{R},14~{R},17~{S})-4,4,8,10,14-pentamethyl-17-[(2~{R})-2,6,6-trimethyloxan-2-yl]-2,3,5,6,7,9,11,12,13,15,16,17-dodecahydro-1~{H}-cyclopenta[a]phenanthrene-3,12-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
88K "Create component" 2021-11-30 PDBJ 
88K "Initial release"  2022-12-07 RCSB 
88K "Modify synonyms"  2022-12-12 PDBJ 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      88K 
_pdbx_chem_comp_synonyms.name         Panaxadiol 
_pdbx_chem_comp_synonyms.provenance   PUBCHEM 
_pdbx_chem_comp_synonyms.type         ? 
# 
