data_7ZK
#

_chem_comp.id                                   7ZK
_chem_comp.name                                 "2-[(3R)-3-{5-[2-(3,5-dimethylphenoxy)pyrimidin-4-yl]-4-(4-iodophenyl)-1H-imidazol-1-yl}pyrrolidin-1-yl]ethan-1-amine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C27 H29 I N6 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-08-24
_chem_comp.pdbx_modified_date                   2022-01-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       580.463
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    7ZK
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7RXT
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
7ZK  C13  C1   C  0  1  Y  N  N   4.691  23.239   8.210   1.629  -1.673  -0.343  C13  7ZK   1  
7ZK  C15  C2   C  0  1  Y  N  N   6.841  22.079   8.968  -0.304  -3.078  -1.050  C15  7ZK   2  
7ZK  C17  C3   C  0  1  Y  N  N   7.077  21.324  11.258  -2.460  -2.796  -0.044  C17  7ZK   3  
7ZK  C20  C4   C  0  1  Y  N  N   5.044  22.394  10.562  -0.635  -1.420   0.671  C20  7ZK   4  
7ZK  C22  C5   C  0  1  Y  N  N   2.940  23.880   7.163   3.772  -1.804  -0.620  C22  7ZK   5  
7ZK  C24  C6   C  0  1  N  N  R   3.846  25.254   5.339   4.478   0.586  -0.310  C24  7ZK   6  
7ZK  C28  C7   C  0  1  N  N  N  -0.525  24.826   4.519   8.962  -1.077   0.403  C28  7ZK   7  
7ZK  C01  C8   C  0  1  N  N  N   4.517  27.129   1.201  -5.140   4.807   1.958  C01  7ZK   8  
7ZK  C02  C9   C  0  1  Y  N  N   5.253  25.871   1.634  -4.096   4.677   0.879  C02  7ZK   9  
7ZK  C03  C10  C  0  1  Y  N  N   4.769  24.596   1.279  -3.793   5.762   0.077  C03  7ZK  10  
7ZK  C04  C11  C  0  1  Y  N  N   5.457  23.463   1.680  -2.836   5.646  -0.914  C04  7ZK  11  
7ZK  C05  C12  C  0  1  N  N  N   4.940  22.068   1.301  -2.507   6.830  -1.786  C05  7ZK  12  
7ZK  C06  C13  C  0  1  Y  N  N   6.613  23.577   2.436  -2.180   4.445  -1.105  C06  7ZK  13  
7ZK  C07  C14  C  0  1  Y  N  N   7.086  24.844   2.787  -2.483   3.355  -0.302  C07  7ZK  14  
7ZK  C09  C15  C  0  1  Y  N  N   8.025  24.885   4.959  -0.560   2.069  -0.055  C09  7ZK  15  
7ZK  C11  C16  C  0  1  Y  N  N   6.526  24.455   6.690   1.383   0.836   0.095  C11  7ZK  16  
7ZK  C12  C17  C  0  1  Y  N  N   5.080  24.053   7.135   2.141  -0.395  -0.195  C12  7ZK  17  
7ZK  C14  C18  C  0  1  Y  N  N   5.586  22.539   9.273   0.204  -2.064  -0.239  C14  7ZK  18  
7ZK  C16  C19  C  0  1  Y  N  N   7.628  21.463   9.973  -1.632  -3.439  -0.949  C16  7ZK  19  
7ZK  C19  C20  C  0  1  Y  N  N   5.819  21.770  11.570  -1.961  -1.789   0.763  C19  7ZK  20  
7ZK  C25  C21  C  0  1  N  N  N   2.673  24.684   4.440   5.488   0.337   0.831  C25  7ZK  21  
7ZK  C27  C22  C  0  1  N  N  N   0.838  25.339   3.949   7.862  -0.184   0.980  C27  7ZK  22  
7ZK  C30  C23  C  0  1  N  N  N   2.271  26.821   5.008   6.780   0.389  -1.125  C30  7ZK  23  
7ZK  C31  C24  C  0  1  N  N  N   3.421  26.628   5.675   5.328   0.620  -1.597  C31  7ZK  24  
7ZK  C32  C25  C  0  1  Y  N  N   7.552  24.731   7.627   1.978   1.888   0.804  C32  7ZK  25  
7ZK  C33  C26  C  0  1  Y  N  N   8.810  25.059   7.148   1.226   3.021   1.051  C33  7ZK  26  
7ZK  C35  C27  C  0  1  Y  N  N   6.393  25.985   2.380  -3.440   3.476   0.695  C35  7ZK  27  
7ZK  I18  I1   I  0  1  N  N  N   8.225  20.405  12.779  -4.475  -3.349   0.102  I18  7ZK  28  
7ZK  N10  N1   N  0  1  Y  N  N   6.810  24.550   5.388   0.120   0.966  -0.314  N10  7ZK  29  
7ZK  N21  N2   N  0  1  Y  N  N   3.375  23.172   8.195   2.663  -2.492  -0.604  N21  7ZK  30  
7ZK  N23  N3   N  0  1  Y  N  N   3.962  24.418   6.519   3.503  -0.506  -0.373  N23  7ZK  31  
7ZK  N26  N4   N  0  1  N  N  N   1.673  25.354   4.801   6.643  -0.324   0.171  N26  7ZK  32  
7ZK  N29  N5   N  0  1  N  N  N  -0.492  23.375   4.760  10.180  -0.938   1.212  N29  7ZK  33  
7ZK  N34  N6   N  0  1  Y  N  N   9.009  25.136   5.827  -0.023   3.078   0.613  N34  7ZK  34  
7ZK  O08  O1   O  0  1  N  N  N   8.297  24.980   3.566  -1.839   2.172  -0.488  O08  7ZK  35  
7ZK  H1   H1   H  0  1  N  N  N   7.229  22.186   7.966   0.339  -3.577  -1.759  H1   7ZK  36  
7ZK  H2   H2   H  0  1  N  N  N   4.049  22.754  10.781  -0.247  -0.633   1.301  H2   7ZK  37  
7ZK  H3   H3   H  0  1  N  N  N   1.903  24.000   6.888   4.754  -2.212  -0.805  H3   7ZK  38  
7ZK  H4   H4   H  0  1  N  N  N   4.781  25.262   4.760   3.969   1.539  -0.166  H4   7ZK  39  
7ZK  H5   H5   H  0  1  N  N  N  -0.733  25.342   5.468   8.632  -2.116   0.420  H5   7ZK  40  
7ZK  H6   H6   H  0  1  N  N  N  -1.323  25.051   3.796   9.171  -0.779  -0.624  H6   7ZK  41  
7ZK  H7   H7   H  0  1  N  N  N   3.776  27.402   1.966  -4.666   5.133   2.884  H7   7ZK  42  
7ZK  H8   H8   H  0  1  N  N  N   5.237  27.951   1.078  -5.887   5.541   1.655  H8   7ZK  43  
7ZK  H9   H9   H  0  1  N  N  N   4.006  26.944   0.245  -5.621   3.843   2.117  H9   7ZK  44  
7ZK  H10  H10  H  0  1  N  N  N   3.865  24.503   0.696  -4.304   6.701   0.225  H10  7ZK  45  
7ZK  H11  H11  H  0  1  N  N  N   5.378  21.763   0.339  -1.702   7.405  -1.329  H11  7ZK  46  
7ZK  H12  H12  H  0  1  N  N  N   5.227  21.347   2.080  -2.191   6.481  -2.769  H12  7ZK  47  
7ZK  H13  H13  H  0  1  N  N  N   3.844  22.095   1.212  -3.390   7.460  -1.891  H13  7ZK  48  
7ZK  H14  H14  H  0  1  N  N  N   7.145  22.692   2.752  -1.433   4.354  -1.880  H14  7ZK  49  
7ZK  H15  H15  H  0  1  N  N  N   8.625  21.110   9.757  -2.027  -4.224  -1.577  H15  7ZK  50  
7ZK  H16  H16  H  0  1  N  N  N   5.425  21.648  12.568  -2.611  -1.291   1.467  H16  7ZK  51  
7ZK  H17  H17  H  0  1  N  N  N   2.517  23.612   4.631   5.795   1.282   1.279  H17  7ZK  52  
7ZK  H18  H18  H  0  1  N  N  N   2.885  24.839   3.372   5.055  -0.319   1.586  H18  7ZK  53  
7ZK  H19  H19  H  0  1  N  N  N   1.163  24.673   3.137   7.652  -0.482   2.007  H19  7ZK  54  
7ZK  H20  H20  H  0  1  N  N  N   0.705  26.358   3.556   8.192   0.855   0.963  H20  7ZK  55  
7ZK  H21  H21  H  0  1  N  N  N   2.461  27.303   4.038   7.319  -0.228  -1.843  H21  7ZK  56  
7ZK  H22  H22  H  0  1  N  N  N   1.580  27.442   5.597   7.290   1.342  -0.985  H22  7ZK  57  
7ZK  H23  H23  H  0  1  N  N  N   4.180  27.355   5.351   5.019  -0.175  -2.275  H23  7ZK  58  
7ZK  H24  H24  H  0  1  N  N  N   3.258  26.726   6.758   5.238   1.591  -2.084  H24  7ZK  59  
7ZK  H25  H25  H  0  1  N  N  N   7.358  24.687   8.689   2.998   1.815   1.150  H25  7ZK  60  
7ZK  H26  H26  H  0  1  N  N  N   9.622  25.251   7.834   1.653   3.851   1.594  H26  7ZK  61  
7ZK  H27  H27  H  0  1  N  N  N   6.759  26.963   2.656  -3.675   2.630   1.324  H27  7ZK  62  
7ZK  H29  H29  H  0  1  N  N  N  -1.375  23.077   5.123  10.922  -1.518   0.851  H29  7ZK  63  
7ZK  H30  H30  H  0  1  N  N  N  -0.307  22.899   3.900  10.470   0.027   1.265  H30  7ZK  64  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
7ZK  C01  C02  SING  N  N   1  
7ZK  C03  C02  DOUB  Y  N   2  
7ZK  C03  C04  SING  Y  N   3  
7ZK  C05  C04  SING  N  N   4  
7ZK  C02  C35  SING  Y  N   5  
7ZK  C04  C06  DOUB  Y  N   6  
7ZK  C35  C07  DOUB  Y  N   7  
7ZK  C06  C07  SING  Y  N   8  
7ZK  C07  O08  SING  N  N   9  
7ZK  O08  C09  SING  N  N  10  
7ZK  C27  C28  SING  N  N  11  
7ZK  C27  N26  SING  N  N  12  
7ZK  C25  N26  SING  N  N  13  
7ZK  C25  C24  SING  N  N  14  
7ZK  C28  N29  SING  N  N  15  
7ZK  N26  C30  SING  N  N  16  
7ZK  C09  N10  DOUB  Y  N  17  
7ZK  C09  N34  SING  Y  N  18  
7ZK  C30  C31  SING  N  N  19  
7ZK  C24  C31  SING  N  N  20  
7ZK  C24  N23  SING  N  N  21  
7ZK  N10  C11  SING  Y  N  22  
7ZK  N34  C33  DOUB  Y  N  23  
7ZK  N23  C12  SING  Y  N  24  
7ZK  N23  C22  SING  Y  N  25  
7ZK  C11  C12  SING  N  N  26  
7ZK  C11  C32  DOUB  Y  N  27  
7ZK  C12  C13  DOUB  Y  N  28  
7ZK  C33  C32  SING  Y  N  29  
7ZK  C22  N21  DOUB  Y  N  30  
7ZK  N21  C13  SING  Y  N  31  
7ZK  C13  C14  SING  N  N  32  
7ZK  C15  C14  DOUB  Y  N  33  
7ZK  C15  C16  SING  Y  N  34  
7ZK  C14  C20  SING  Y  N  35  
7ZK  C16  C17  DOUB  Y  N  36  
7ZK  C20  C19  DOUB  Y  N  37  
7ZK  C17  C19  SING  Y  N  38  
7ZK  C17  I18  SING  N  N  39  
7ZK  C15  H1   SING  N  N  40  
7ZK  C20  H2   SING  N  N  41  
7ZK  C22  H3   SING  N  N  42  
7ZK  C24  H4   SING  N  N  43  
7ZK  C28  H5   SING  N  N  44  
7ZK  C28  H6   SING  N  N  45  
7ZK  C01  H7   SING  N  N  46  
7ZK  C01  H8   SING  N  N  47  
7ZK  C01  H9   SING  N  N  48  
7ZK  C03  H10  SING  N  N  49  
7ZK  C05  H11  SING  N  N  50  
7ZK  C05  H12  SING  N  N  51  
7ZK  C05  H13  SING  N  N  52  
7ZK  C06  H14  SING  N  N  53  
7ZK  C16  H15  SING  N  N  54  
7ZK  C19  H16  SING  N  N  55  
7ZK  C25  H17  SING  N  N  56  
7ZK  C25  H18  SING  N  N  57  
7ZK  C27  H19  SING  N  N  58  
7ZK  C27  H20  SING  N  N  59  
7ZK  C30  H21  SING  N  N  60  
7ZK  C30  H22  SING  N  N  61  
7ZK  C31  H23  SING  N  N  62  
7ZK  C31  H24  SING  N  N  63  
7ZK  C32  H25  SING  N  N  64  
7ZK  C33  H26  SING  N  N  65  
7ZK  C35  H27  SING  N  N  66  
7ZK  N29  H29  SING  N  N  67  
7ZK  N29  H30  SING  N  N  68  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
7ZK  SMILES            ACDLabs               12.01  "NCCN1CCC(C1)n1cnc(c2ccc(I)cc2)c1c1ccnc(Oc2cc(C)cc(C)c2)n1"  
7ZK  InChI             InChI                 1.03   "InChI=1S/C27H29IN6O/c1-18-13-19(2)15-23(14-18)35-27-30-10-7-24(32-27)26-25(20-3-5-21(28)6-4-20)31-17-34(26)22-8-11-33(16-22)12-9-29/h3-7,10,13-15,17,22H,8-9,11-12,16,29H2,1-2H3/t22-/m1/s1"  
7ZK  InChIKey          InChI                 1.03   FUMVZWZADKRAGU-JOCHJYFZSA-N  
7ZK  SMILES_CANONICAL  CACTVS                3.385  "Cc1cc(C)cc(Oc2nccc(n2)c3n(cnc3c4ccc(I)cc4)[C@@H]5CCN(CCN)C5)c1"  
7ZK  SMILES            CACTVS                3.385  "Cc1cc(C)cc(Oc2nccc(n2)c3n(cnc3c4ccc(I)cc4)[CH]5CCN(CCN)C5)c1"  
7ZK  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1cc(cc(c1)Oc2nccc(n2)c3c(ncn3[C@@H]4CCN(C4)CCN)c5ccc(cc5)I)C"  
7ZK  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1cc(cc(c1)Oc2nccc(n2)c3c(ncn3C4CCN(C4)CCN)c5ccc(cc5)I)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
7ZK  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-[(3R)-3-{5-[2-(3,5-dimethylphenoxy)pyrimidin-4-yl]-4-(4-iodophenyl)-1H-imidazol-1-yl}pyrrolidin-1-yl]ethan-1-amine"  
7ZK  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "2-[(3~{R})-3-[5-[2-(3,5-dimethylphenoxy)pyrimidin-4-yl]-4-(4-iodophenyl)imidazol-1-yl]pyrrolidin-1-yl]ethanamine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
7ZK  "Create component"  2021-08-24  RCSB  
7ZK  "Initial release"   2022-01-19  RCSB  
##
