data_7PK
# 
_chem_comp.id                                    7PK 
_chem_comp.name                                  "(2~{S},4~{S},6~{R})-2-[(2~{S},3~{R},5~{S},6~{R})-3,5-bis(methylamino)-2,4,6-tris(oxidanyl)cyclohexyl]oxy-6-methyl-4-oxidanyl-oxan-3-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H26 N2 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-02-22 
_chem_comp.pdbx_modified_date                    2022-12-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        334.365 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     7PK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7WZX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
7PK C01 C1  C 0 1 N N N 4.031 45.502 5.124  2.905  -0.692 -0.729 C01 7PK 1  
7PK C02 C2  C 0 1 N N S 3.687 45.165 3.668  2.724  0.774  -0.330 C02 7PK 2  
7PK C03 C3  C 0 1 N N R 2.775 43.931 3.573  2.160  0.851  1.090  C03 7PK 3  
7PK C04 C4  C 0 1 N N N 3.052 42.786 4.601  0.807  0.138  1.140  C04 7PK 4  
7PK C05 C5  C 0 1 N N S 4.173 42.986 5.672  0.987  -1.328 0.741  C05 7PK 5  
7PK C06 C6  C 0 1 N N R 4.859 44.365 5.738  1.552  -1.404 -0.679 C06 7PK 6  
7PK C08 C7  C 0 1 N N S 3.737 40.861 3.095  -1.468 0.696  0.632  C08 7PK 7  
7PK C09 C8  C 0 1 N N N 3.568 39.340 3.251  -2.323 1.497  -0.326 C09 7PK 8  
7PK C10 C9  C 0 1 N N S 3.761 38.374 2.073  -3.827 1.329  -0.241 C10 7PK 9  
7PK C11 C10 C 0 1 N N R 3.862 40.482 0.788  -3.297 -0.839 0.878  C11 7PK 10 
7PK C17 C11 C 0 1 N N N 3.330 39.058 0.776  -4.134 -0.174 -0.218 C17 7PK 11 
7PK C20 C12 C 0 1 N N N 3.657 47.545 3.220  3.851  2.901  -0.592 C20 7PK 12 
7PK C22 C13 C 0 1 N N N 6.197 43.904 7.702  0.475  -3.370 -1.596 C22 7PK 13 
7PK C23 C14 C 0 1 N N N 3.594 41.140 -0.568 -3.624 -2.332 0.931  C23 7PK 14 
7PK N19 N1  N 0 1 N N N 2.980 46.275 3.027  4.023  1.458  -0.378 N19 7PK 15 
7PK N21 N2  N 0 1 N N N 5.128 44.715 7.130  1.725  -2.812 -1.062 N21 7PK 16 
7PK O07 O1  O 0 1 N N N 2.953 41.436 4.116  -0.098 0.771  0.233  O07 7PK 17 
7PK O12 O2  O 0 1 N N N 3.247 41.219 1.822  -1.907 -0.667 0.597  O12 7PK 18 
7PK O13 O3  O 0 1 N N N 2.871 45.777 5.873  3.810  -1.324 0.178  O13 7PK 19 
7PK O14 O4  O 0 1 N N N 2.721 43.517 2.228  1.991  2.220  1.462  O14 7PK 20 
7PK O15 O5  O 0 1 N N N 5.149 41.975 5.598  -0.276 -1.993 0.788  O15 7PK 21 
7PK O16 O6  O 0 1 N N N 3.006 37.195 2.246  -4.446 1.931  -1.379 O16 7PK 22 
7PK O18 O7  O 0 1 N N N 3.269 38.920 4.316  -1.824 2.245  -1.132 O18 7PK 23 
7PK H1  H1  H 0 1 N N N 4.667 46.399 5.110  3.307  -0.746 -1.741 H1  7PK 24 
7PK H2  H2  H 0 1 N N N 4.620 44.957 3.124  2.034  1.257  -1.022 H2  7PK 25 
7PK H3  H3  H 0 1 N N N 1.770 44.299 3.826  2.851  0.368  1.782  H3  7PK 26 
7PK H4  H4  H 0 1 N N N 2.154 42.859 5.232  0.405  0.193  2.152  H4  7PK 27 
7PK H5  H5  H 0 1 N N N 3.666 42.868 6.641  1.678  -1.810 1.433  H5  7PK 28 
7PK H6  H6  H 0 1 N N N 5.811 44.300 5.192  0.861  -0.922 -1.371 H6  7PK 29 
7PK H7  H7  H 0 1 N N N 4.799 41.127 3.206  -1.579 1.092  1.642  H7  7PK 30 
7PK H8  H8  H 0 1 N N N 4.831 38.129 1.998  -4.199 1.796  0.671  H8  7PK 31 
7PK H9  H9  H 0 1 N N N 4.950 40.447 0.947  -3.531 -0.382 1.840  H9  7PK 32 
7PK H10 H10 H 0 1 N N N 2.232 39.072 0.710  -5.193 -0.327 -0.010 H10 7PK 33 
7PK H11 H11 H 0 1 N N N 3.743 38.514 -0.086 -3.884 -0.613 -1.184 H11 7PK 34 
7PK H12 H12 H 0 1 N N N 3.088 48.344 2.721  4.828  3.384  -0.624 H12 7PK 35 
7PK H13 H13 H 0 1 N N N 3.728 47.763 4.296  3.332  3.069  -1.536 H13 7PK 36 
7PK H14 H14 H 0 1 N N N 4.668 47.491 2.789  3.264  3.322  0.225  H14 7PK 37 
7PK H15 H15 H 0 1 N N N 6.364 44.202 8.748  0.632  -4.413 -1.872 H15 7PK 38 
7PK H16 H16 H 0 1 N N N 5.912 42.842 7.664  -0.304 -3.307 -0.837 H16 7PK 39 
7PK H17 H17 H 0 1 N N N 7.121 44.056 7.125  0.172  -2.803 -2.476 H17 7PK 40 
7PK H18 H18 H 0 1 N N N 3.979 42.170 -0.559 -3.033 -2.806 1.715  H18 7PK 41 
7PK H19 H19 H 0 1 N N N 4.099 40.567 -1.360 -4.685 -2.464 1.145  H19 7PK 42 
7PK H20 H20 H 0 1 N N N 2.511 41.155 -0.760 -3.388 -2.790 -0.030 H20 7PK 43 
7PK H21 H21 H 0 1 N N N 2.061 46.338 3.416  4.618  1.056  -1.088 H21 7PK 44 
7PK H23 H23 H 0 1 N N N 5.394 45.678 7.175  2.480  -2.916 -1.724 H23 7PK 45 
7PK H25 H25 H 0 1 N N N 3.113 45.982 6.769  4.690  -0.924 0.199  H25 7PK 46 
7PK H26 H26 H 0 1 N N N 2.160 42.754 2.153  1.636  2.344  2.353  H26 7PK 47 
7PK H27 H27 H 0 1 N N N 5.813 42.126 6.260  -0.693 -1.984 1.660  H27 7PK 48 
7PK H28 H28 H 0 1 N N N 2.666 37.163 3.133  -4.272 2.878  -1.466 H28 7PK 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
7PK C23 C11 SING N N 1  
7PK C17 C11 SING N N 2  
7PK C17 C10 SING N N 3  
7PK C11 O12 SING N N 4  
7PK O12 C08 SING N N 5  
7PK C10 O16 SING N N 6  
7PK C10 C09 SING N N 7  
7PK O14 C03 SING N N 8  
7PK N19 C20 SING N N 9  
7PK N19 C02 SING N N 10 
7PK C08 C09 SING N N 11 
7PK C08 O07 SING N N 12 
7PK C09 O18 DOUB N N 13 
7PK C03 C02 SING N N 14 
7PK C03 C04 SING N N 15 
7PK C02 C01 SING N N 16 
7PK O07 C04 SING N N 17 
7PK C04 C05 SING N N 18 
7PK C01 C06 SING N N 19 
7PK C01 O13 SING N N 20 
7PK O15 C05 SING N N 21 
7PK C05 C06 SING N N 22 
7PK C06 N21 SING N N 23 
7PK N21 C22 SING N N 24 
7PK C01 H1  SING N N 25 
7PK C02 H2  SING N N 26 
7PK C03 H3  SING N N 27 
7PK C04 H4  SING N N 28 
7PK C05 H5  SING N N 29 
7PK C06 H6  SING N N 30 
7PK C08 H7  SING N N 31 
7PK C10 H8  SING N N 32 
7PK C11 H9  SING N N 33 
7PK C17 H10 SING N N 34 
7PK C17 H11 SING N N 35 
7PK C20 H12 SING N N 36 
7PK C20 H13 SING N N 37 
7PK C20 H14 SING N N 38 
7PK C22 H15 SING N N 39 
7PK C22 H16 SING N N 40 
7PK C22 H17 SING N N 41 
7PK C23 H18 SING N N 42 
7PK C23 H19 SING N N 43 
7PK C23 H20 SING N N 44 
7PK N19 H21 SING N N 45 
7PK N21 H23 SING N N 46 
7PK O13 H25 SING N N 47 
7PK O14 H26 SING N N 48 
7PK O15 H27 SING N N 49 
7PK O16 H28 SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
7PK InChI            InChI                1.03  "InChI=1S/C14H26N2O7/c1-5-4-6(17)9(18)14(22-5)23-13-11(20)7(15-2)10(19)8(16-3)12(13)21/h5-8,10-17,19-21H,4H2,1-3H3/t5-,6+,7-,8+,10+,11+,12-,13+,14+/m1/s1" 
7PK InChIKey         InChI                1.03  VKGOUJWNNSMSLM-MWLBSAGXSA-N                                                                                                                                
7PK SMILES_CANONICAL CACTVS               3.385 "CN[C@H]1[C@@H](O)[C@@H](NC)[C@H](O)[C@H](O[C@@H]2O[C@H](C)C[C@H](O)C2=O)[C@@H]1O"                                                                         
7PK SMILES           CACTVS               3.385 "CN[CH]1[CH](O)[CH](NC)[CH](O)[CH](O[CH]2O[CH](C)C[CH](O)C2=O)[CH]1O"                                                                                      
7PK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1C[C@@H](C(=O)[C@@H](O1)OC2[C@@H]([C@H](C([C@H]([C@@H]2O)NC)O)NC)O)O"                                                                              
7PK SMILES           "OpenEye OEToolkits" 2.0.7 "CC1CC(C(=O)C(O1)OC2C(C(C(C(C2O)NC)O)NC)O)O"                                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           7PK 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S},4~{S},6~{R})-2-[(2~{S},3~{R},5~{S},6~{R})-3,5-bis(methylamino)-2,4,6-tris(oxidanyl)cyclohexyl]oxy-6-methyl-4-oxidanyl-oxan-3-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
7PK "Create component" 2022-02-22 PDBJ 
7PK "Initial release"  2022-12-28 RCSB 
# 
