data_6IK
#

_chem_comp.id                                   6IK
_chem_comp.name                                 "4-[[(3S)-3-cyclopropyl-2-azaspiro[3.3]heptan-2-yl]methyl]-N-[[(3S)-3-oxidanyl-1-[6-[(phenylmethyl)amino]pyrimidin-4-yl]piperidin-3-yl]methyl]benzamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C34 H42 N6 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-07-28
_chem_comp.pdbx_modified_date                   2021-10-15
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       566.736
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    6IK
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7OEH
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6IK  C10  C1   C  0  1  N  N  N  43.346  -28.377  20.932    6.985  -0.581  -0.790  C10  6IK   1  
6IK  C13  C2   C  0  1  N  N  N  41.118  -26.285  20.831    9.041   2.202  -0.849  C13  6IK   2  
6IK  C15  C3   C  0  1  N  N  N  40.363  -26.442  19.511    9.179   2.049  -2.365  C15  6IK   3  
6IK  C17  C4   C  0  1  N  N  N  42.377  -25.459  23.818    8.525   2.610   2.033  C17  6IK   4  
6IK  C20  C5   C  0  1  N  N  N  43.651  -27.202  22.684    7.380   0.275   1.451  C20  6IK   5  
6IK  C21  C6   C  0  1  Y  N  N  42.361  -30.782  21.721    4.847  -0.134  -2.012  C21  6IK   6  
6IK  C22  C7   C  0  1  Y  N  N  42.632  -32.213  22.235    3.481  -0.265  -2.157  C22  6IK   7  
6IK  C24  C8   C  0  1  N  N  N  45.330  -35.046  26.837   -1.104  -2.162   1.867  C24  6IK   8  
6IK  C26  C9   C  0  1  N  N  N  43.109  -35.697  27.967   -3.314  -1.011   1.718  C26  6IK   9  
6IK  C02  C10  C  0  1  N  N  S  45.063  -36.009  25.784   -1.414  -2.848   0.534  C02  6IK  10  
6IK  C03  C11  C  0  1  N  N  N  45.850  -35.577  24.471   -0.865  -2.002  -0.616  C03  6IK  11  
6IK  C05  C12  C  0  1  N  N  N  44.433  -34.079  22.987    1.287  -1.146  -1.372  C05  6IK  12  
6IK  C06  C13  C  0  1  Y  N  N  44.079  -32.668  22.476    2.751  -1.001  -1.222  C06  6IK  13  
6IK  C07  C14  C  0  1  Y  N  N  45.241  -31.712  22.204    3.408  -1.599  -0.146  C07  6IK  14  
6IK  C08  C15  C  0  1  Y  N  N  44.961  -30.309  21.681    4.774  -1.459  -0.012  C08  6IK  15  
6IK  C09  C16  C  0  1  Y  N  N  43.536  -29.828  21.442    5.493  -0.729  -0.942  C09  6IK  16  
6IK  C12  C17  C  0  1  N  N  S  42.610  -26.459  21.213    8.723   0.944  -0.038  C12  6IK  17  
6IK  C14  C18  C  0  1  N  N  N  40.518  -25.050  20.140   10.421   2.289  -1.504  C14  6IK  18  
6IK  C16  C19  C  0  1  N  N  N  42.933  -25.970  22.482    8.603   1.193   1.467  C16  6IK  19  
6IK  C18  C20  C  0  1  N  N  N  42.788  -24.038  23.415   10.015   2.455   2.390  C18  6IK  20  
6IK  C19  C21  C  0  1  N  N  N  43.692  -24.636  22.332    9.778   0.934   2.410  C19  6IK  21  
6IK  C25  C22  C  0  1  N  N  N  44.575  -35.223  28.078   -1.810  -0.804   1.910  C25  6IK  22  
6IK  C27  C23  C  0  1  N  N  N  43.555  -36.147  25.464   -2.930  -2.996   0.382  C27  6IK  23  
6IK  C29  C24  C  0  1  Y  N  N  41.838  -37.649  26.751   -4.917  -1.754   0.164  C29  6IK  24  
6IK  C31  C25  C  0  1  Y  N  N  40.309  -39.220  28.052   -6.777  -3.024  -0.325  C31  6IK  25  
6IK  C33  C26  C  0  1  Y  N  N  40.697  -39.624  25.573   -7.064  -0.747  -0.118  C33  6IK  26  
6IK  C35  C27  C  0  1  N  N  N  41.383  -39.999  23.246   -7.342   1.695   0.121  C35  6IK  27  
6IK  C36  C28  C  0  1  Y  N  N  42.069  -41.237  22.641   -8.443   2.721   0.037  C36  6IK  28  
6IK  C37  C29  C  0  1  Y  N  N  41.702  -41.675  21.221   -9.167   3.052   1.167  C37  6IK  29  
6IK  C38  C30  C  0  1  Y  N  N  42.387  -42.895  20.596  -10.177   3.993   1.090  C38  6IK  30  
6IK  C39  C31  C  0  1  Y  N  N  43.441  -43.661  21.405  -10.463   4.602  -0.117  C39  6IK  31  
6IK  C40  C32  C  0  1  Y  N  N  43.811  -43.217  22.828   -9.739   4.272  -1.247  C40  6IK  32  
6IK  C41  C33  C  0  1  Y  N  N  43.126  -42.004  23.447   -8.726   3.334  -1.169  C41  6IK  33  
6IK  C42  C34  C  0  1  Y  N  N  41.603  -38.436  25.510   -5.706  -0.609   0.153  C42  6IK  34  
6IK  N04  N1   N  0  1  N  N  N  45.490  -34.230  23.998    0.585  -1.857  -0.468  N04  6IK  35  
6IK  N11  N2   N  0  1  N  N  N  42.825  -27.780  21.711    7.279   0.614   0.012  N11  6IK  36  
6IK  N28  N3   N  0  1  N  N  N  42.715  -36.471  26.700   -3.559  -1.669   0.429  N28  6IK  37  
6IK  N30  N4   N  0  1  Y  N  N  41.198  -38.028  27.999   -5.486  -2.934  -0.078  N30  6IK  38  
6IK  N32  N5   N  0  1  Y  N  N  40.052  -40.010  26.817   -7.558  -1.963  -0.344  N32  6IK  39  
6IK  N34  N6   N  0  1  N  N  N  40.496  -40.377  24.349   -7.894   0.364  -0.141  N34  6IK  40  
6IK  O01  O1   O  0  1  N  N  N  45.560  -37.280  26.145   -0.803  -4.140   0.509  O01  6IK  41  
6IK  O23  O2   O  0  1  N  N  N  43.878  -35.038  22.563    0.718  -0.625  -2.311  O23  6IK  42  
6IK  H1   H1   H  0  1  N  N  N  44.329  -27.930  20.722    7.388  -1.462  -0.291  H1   6IK  43  
6IK  H2   H2   H  0  1  N  N  N  42.743  -28.387  20.012    7.442  -0.479  -1.774  H2   6IK  44  
6IK  H3   H3   H  0  1  N  N  N  40.479  -26.594  21.672    8.601   3.126  -0.474  H3   6IK  45  
6IK  H4   H4   H  0  1  N  N  N  40.911  -26.693  18.591    9.043   1.052  -2.784  H4   6IK  46  
6IK  H5   H5   H  0  1  N  N  N  39.378  -26.932  19.496    8.831   2.873  -2.988  H5   6IK  47  
6IK  H6   H6   H  0  1  N  N  N  41.293  -25.599  23.941    8.333   3.373   1.278  H6   6IK  48  
6IK  H7   H7   H  0  1  N  N  N  42.900  -25.847  24.704    7.873   2.699   2.902  H7   6IK  49  
6IK  H8   H8   H  0  1  N  N  N  44.716  -27.160  22.414    7.613  -0.772   1.642  H8   6IK  50  
6IK  H9   H9   H  0  1  N  N  N  43.545  -27.634  23.690    6.546   0.643   2.049  H9   6IK  51  
6IK  H10  H10  H  0  1  N  N  N  41.346  -30.451  21.557    5.414   0.431  -2.737  H10  6IK  52  
6IK  H11  H11  H  0  1  N  N  N  41.811  -32.888  22.423    2.979   0.200  -2.992  H11  6IK  53  
6IK  H12  H12  H  0  1  N  N  N  46.400  -35.106  27.083   -1.460  -2.784   2.689  H12  6IK  54  
6IK  H13  H13  H  0  1  N  N  N  45.100  -34.045  26.443   -0.027  -2.016   1.960  H13  6IK  55  
6IK  H14  H14  H  0  1  N  N  N  42.906  -36.349  28.829   -3.700  -1.635   2.524  H14  6IK  56  
6IK  H15  H15  H  0  1  N  N  N  42.468  -34.805  28.023   -3.818  -0.044   1.734  H15  6IK  57  
6IK  H16  H16  H  0  1  N  N  N  46.928  -35.595  24.687   -1.087  -2.491  -1.565  H16  6IK  58  
6IK  H17  H17  H  0  1  N  N  N  45.624  -36.300  23.674   -1.332  -1.017  -0.597  H17  6IK  59  
6IK  H18  H18  H  0  1  N  N  N  46.257  -32.031  22.382    2.849  -2.169   0.581  H18  6IK  60  
6IK  H19  H19  H  0  1  N  N  N  45.787  -29.644  21.476    5.284  -1.921   0.821  H19  6IK  61  
6IK  H20  H20  H  0  1  N  N  N  43.292  -26.156  20.405    9.361   0.099  -0.294  H20  6IK  62  
6IK  H21  H21  H  0  1  N  N  N  39.646  -24.543  20.578   10.889   3.272  -1.561  H21  6IK  63  
6IK  H22  H22  H  0  1  N  N  N  41.179  -24.305  19.673   11.102   1.451  -1.357  H22  6IK  64  
6IK  H23  H23  H  0  1  N  N  N  41.964  -23.421  23.027   10.689   2.782   1.599  H23  6IK  65  
6IK  H24  H24  H  0  1  N  N  N  43.325  -23.483  24.198   10.274   2.869   3.365  H24  6IK  66  
6IK  H25  H25  H  0  1  N  N  N  44.756  -24.686  22.606    9.479   0.550   3.385  H25  6IK  67  
6IK  H26  H26  H  0  1  N  N  N  43.589  -24.164  21.344   10.585   0.360   1.956  H26  6IK  68  
6IK  H27  H27  H  0  1  N  N  N  45.114  -35.963  28.687   -1.627  -0.329   2.874  H27  6IK  69  
6IK  H28  H28  H  0  1  N  N  N  44.568  -34.254  28.599   -1.425  -0.169   1.112  H28  6IK  70  
6IK  H29  H29  H  0  1  N  N  N  43.198  -35.199  25.035   -3.155  -3.471  -0.572  H29  6IK  71  
6IK  H30  H30  H  0  1  N  N  N  43.424  -36.954  24.728   -3.318  -3.610   1.194  H30  6IK  72  
6IK  H31  H31  H  0  1  N  N  N  39.851  -39.512  28.985   -7.207  -3.996  -0.517  H31  6IK  73  
6IK  H32  H32  H  0  1  N  N  N  42.153  -39.310  23.623   -6.576   1.923  -0.620  H32  6IK  74  
6IK  H33  H33  H  0  1  N  N  N  40.792  -39.497  22.465   -6.901   1.717   1.117  H33  6IK  75  
6IK  H34  H34  H  0  1  N  N  N  40.961  -41.125  20.660   -8.943   2.576   2.110  H34  6IK  76  
6IK  H35  H35  H  0  1  N  N  N  42.130  -43.212  19.596  -10.743   4.251   1.973  H35  6IK  77  
6IK  H36  H36  H  0  1  N  N  N  43.928  -44.521  20.970  -11.253   5.337  -0.178  H36  6IK  78  
6IK  H37  H37  H  0  1  N  N  N  44.555  -43.763  23.389   -9.962   4.748  -2.191  H37  6IK  79  
6IK  H38  H38  H  0  1  N  N  N  43.383  -41.686  24.447   -8.157   3.079  -2.051  H38  6IK  80  
6IK  H39  H39  H  0  1  N  N  N  42.078  -38.155  24.582   -5.277   0.363   0.349  H39  6IK  81  
6IK  H40  H40  H  0  1  N  N  N  45.960  -33.425  24.361    1.040  -2.273   0.281  H40  6IK  82  
6IK  H42  H42  H  0  1  N  N  N  40.645  -41.345  24.551   -8.839   0.259  -0.330  H42  6IK  83  
6IK  H43  H43  H  0  1  N  N  N  45.379  -37.901  25.449    0.159  -4.122   0.603  H43  6IK  84  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6IK  C10  C09  SING  N  N   1  
6IK  C10  N11  SING  N  N   2  
6IK  C13  C15  SING  N  N   3  
6IK  C13  C12  SING  N  N   4  
6IK  C13  C14  SING  N  N   5  
6IK  C15  C14  SING  N  N   6  
6IK  C17  C16  SING  N  N   7  
6IK  C17  C18  SING  N  N   8  
6IK  C20  C16  SING  N  N   9  
6IK  C20  N11  SING  N  N  10  
6IK  C21  C22  DOUB  Y  N  11  
6IK  C21  C09  SING  Y  N  12  
6IK  C22  C06  SING  Y  N  13  
6IK  C24  C02  SING  N  N  14  
6IK  C24  C25  SING  N  N  15  
6IK  C26  C25  SING  N  N  16  
6IK  C26  N28  SING  N  N  17  
6IK  C02  C03  SING  N  N  18  
6IK  C02  C27  SING  N  N  19  
6IK  C02  O01  SING  N  N  20  
6IK  C03  N04  SING  N  N  21  
6IK  C05  C06  SING  N  N  22  
6IK  C05  N04  SING  N  N  23  
6IK  C05  O23  DOUB  N  N  24  
6IK  C06  C07  DOUB  Y  N  25  
6IK  C07  C08  SING  Y  N  26  
6IK  C08  C09  DOUB  Y  N  27  
6IK  C12  C16  SING  N  N  28  
6IK  C12  N11  SING  N  N  29  
6IK  C16  C19  SING  N  N  30  
6IK  C18  C19  SING  N  N  31  
6IK  C27  N28  SING  N  N  32  
6IK  C29  C42  DOUB  Y  N  33  
6IK  C29  N28  SING  N  N  34  
6IK  C29  N30  SING  Y  N  35  
6IK  C31  N30  DOUB  Y  N  36  
6IK  C31  N32  SING  Y  N  37  
6IK  C33  C42  SING  Y  N  38  
6IK  C33  N32  DOUB  Y  N  39  
6IK  C33  N34  SING  N  N  40  
6IK  C35  C36  SING  N  N  41  
6IK  C35  N34  SING  N  N  42  
6IK  C36  C37  DOUB  Y  N  43  
6IK  C36  C41  SING  Y  N  44  
6IK  C37  C38  SING  Y  N  45  
6IK  C38  C39  DOUB  Y  N  46  
6IK  C39  C40  SING  Y  N  47  
6IK  C40  C41  DOUB  Y  N  48  
6IK  C10  H1   SING  N  N  49  
6IK  C10  H2   SING  N  N  50  
6IK  C13  H3   SING  N  N  51  
6IK  C15  H4   SING  N  N  52  
6IK  C15  H5   SING  N  N  53  
6IK  C17  H6   SING  N  N  54  
6IK  C17  H7   SING  N  N  55  
6IK  C20  H8   SING  N  N  56  
6IK  C20  H9   SING  N  N  57  
6IK  C21  H10  SING  N  N  58  
6IK  C22  H11  SING  N  N  59  
6IK  C24  H12  SING  N  N  60  
6IK  C24  H13  SING  N  N  61  
6IK  C26  H14  SING  N  N  62  
6IK  C26  H15  SING  N  N  63  
6IK  C03  H16  SING  N  N  64  
6IK  C03  H17  SING  N  N  65  
6IK  C07  H18  SING  N  N  66  
6IK  C08  H19  SING  N  N  67  
6IK  C12  H20  SING  N  N  68  
6IK  C14  H21  SING  N  N  69  
6IK  C14  H22  SING  N  N  70  
6IK  C18  H23  SING  N  N  71  
6IK  C18  H24  SING  N  N  72  
6IK  C19  H25  SING  N  N  73  
6IK  C19  H26  SING  N  N  74  
6IK  C25  H27  SING  N  N  75  
6IK  C25  H28  SING  N  N  76  
6IK  C27  H29  SING  N  N  77  
6IK  C27  H30  SING  N  N  78  
6IK  C31  H31  SING  N  N  79  
6IK  C35  H32  SING  N  N  80  
6IK  C35  H33  SING  N  N  81  
6IK  C37  H34  SING  N  N  82  
6IK  C38  H35  SING  N  N  83  
6IK  C39  H36  SING  N  N  84  
6IK  C40  H37  SING  N  N  85  
6IK  C41  H38  SING  N  N  86  
6IK  C42  H39  SING  N  N  87  
6IK  N04  H40  SING  N  N  88  
6IK  N34  H42  SING  N  N  89  
6IK  O01  H43  SING  N  N  90  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6IK  InChI             InChI                 1.03   "InChI=1S/C34H42N6O2/c41-32(28-10-8-26(9-11-28)20-40-22-33(14-4-15-33)31(40)27-12-13-27)36-21-34(42)16-5-17-39(23-34)30-18-29(37-24-38-30)35-19-25-6-2-1-3-7-25/h1-3,6-11,18,24,27,31,42H,4-5,12-17,19-23H2,(H,36,41)(H,35,37,38)/t31-,34-/m0/s1"  
6IK  InChIKey          InChI                 1.03   OWDBESCKAVDZRB-VBTAUBHQSA-N  
6IK  SMILES_CANONICAL  CACTVS                3.385  "O[C@@]1(CCCN(C1)c2cc(NCc3ccccc3)ncn2)CNC(=O)c4ccc(CN5CC6(CCC6)[C@@H]5C7CC7)cc4"  
6IK  SMILES            CACTVS                3.385  "O[C]1(CCCN(C1)c2cc(NCc3ccccc3)ncn2)CNC(=O)c4ccc(CN5CC6(CCC6)[CH]5C7CC7)cc4"  
6IK  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)CNc2cc(ncn2)N3CCC[C@@](C3)(CNC(=O)c4ccc(cc4)CN5CC6([C@@H]5C7CC7)CCC6)O"  
6IK  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)CNc2cc(ncn2)N3CCCC(C3)(CNC(=O)c4ccc(cc4)CN5CC6(C5C7CC7)CCC6)O"  
#
_pdbx_chem_comp_identifier.comp_id          6IK
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "4-[[(3~{S})-3-cyclopropyl-2-azaspiro[3.3]heptan-2-yl]methyl]-~{N}-[[(3~{S})-3-oxidanyl-1-[6-[(phenylmethyl)amino]pyrimidin-4-yl]piperidin-3-yl]methyl]benzamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6IK  "Create component"  2021-07-28  PDBE  
6IK  "Initial release"   2021-10-20  RCSB  
##
