data_6FK
#

_chem_comp.id                                   6FK
_chem_comp.name                                 "[(2~{R},3~{S},5~{R})-5-[2-azanyl-8-[ethanoyl(phenyl)amino]-6-oxidanylidene-3~{H}-purin-9-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate"
_chem_comp.type                                 "DNA linking"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C18 H21 N6 O8 P"
_chem_comp.mon_nstd_parent_comp_id              DG
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-04-15
_chem_comp.pdbx_modified_date                   2019-05-07
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       480.369
_chem_comp.one_letter_code                      G
_chem_comp.three_letter_code                    6FK
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5g32
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6FK  P      P1   P  0  1  N  N  N  24.153  59.978  -23.785   5.534   0.807  -0.605  P      6FK   1  
6FK  OP1    O1   O  0  1  N  Y  N  24.021  58.857  -22.778   5.920   0.795  -2.168  OP1    6FK   2  
6FK  "O5'"  O2   O  0  1  N  N  N  23.063  59.862  -24.980   3.975   1.173  -0.440  "O5'"  6FK   3  
6FK  "C5'"  C1   C  0  1  N  N  N  22.131  58.791  -25.012   3.302   1.163   0.821  "C5'"  6FK   4  
6FK  "C4'"  C2   C  0  1  N  N  R  21.393  58.690  -26.344   1.838   1.557   0.621  "C4'"  6FK   5  
6FK  "C3'"  C3   C  0  1  N  N  S  20.634  57.394  -26.370   1.112   1.636   1.982  "C3'"  6FK   6  
6FK  "O3'"  O3   O  0  1  N  N  N  19.360  57.522  -25.773   1.038   2.990   2.432  "O3'"  6FK   7  
6FK  "C2'"  C4   C  0  1  N  N  N  20.484  57.036  -27.823  -0.302   1.087   1.686  "C2'"  6FK   8  
6FK  "C1'"  C5   C  0  1  N  N  R  21.660  57.705  -28.479  -0.262   0.741   0.181  "C1'"  6FK   9  
6FK  "O4'"  O4   O  0  1  N  N  N  22.218  58.604  -27.508   1.137   0.531  -0.115  "O4'"  6FK  10  
6FK  N9     N1   N  0  1  Y  N  N  22.564  56.596  -28.888  -1.028  -0.480  -0.082  N9     6FK  11  
6FK  C4     C6   C  0  1  Y  N  N  23.182  55.689  -28.133  -0.634  -1.756   0.198  C4     6FK  12  
6FK  C5     C7   C  0  1  Y  N  N  23.948  54.810  -29.056  -1.665  -2.588  -0.217  C5     6FK  13  
6FK  N7     N2   N  0  1  Y  N  N  23.742  55.226  -30.314  -2.643  -1.801  -0.730  N7     6FK  14  
6FK  C8     C8   C  0  1  Y  N  N  22.911  56.266  -30.129  -2.272  -0.549  -0.647  C8     6FK  15  
6FK  N3     N3   N  0  1  N  N  N  23.247  55.454  -26.812   0.485  -2.316   0.759  N3     6FK  16  
6FK  C2     C9   C  0  1  N  N  N  23.999  54.434  -26.358   0.582  -3.663   0.906  C2     6FK  17  
6FK  N2     N4   N  0  1  N  N  N  24.038  54.231  -25.038   1.716  -4.184   1.472  N2     6FK  18  
6FK  N1     N5   N  0  1  N  N  N  24.712  53.598  -27.134  -0.372  -4.486   0.527  N1     6FK  19  
6FK  C6     C10  C  0  1  N  N  N  24.735  53.722  -28.457  -1.504  -4.033  -0.033  C6     6FK  20  
6FK  O6     O5   O  0  1  N  N  N  25.400  52.950  -29.169  -2.382  -4.808  -0.380  O6     6FK  21  
6FK  N4     N6   N  0  1  N  N  N  22.456  56.993  -31.170  -3.021   0.540  -1.076  N4     6FK  22  
6FK  C9     C11  C  0  1  N  N  N  21.645  58.018  -30.899  -2.962   0.934  -2.364  C9     6FK  23  
6FK  C10    C12  C  0  1  N  N  N  20.186  57.700  -30.966  -2.168   0.131  -3.362  C10    6FK  24  
6FK  O11    O6   O  0  1  N  N  N  22.058  59.129  -30.598  -3.549   1.934  -2.719  O11    6FK  25  
6FK  C12    C13  C  0  1  Y  N  N  22.879  56.633  -32.473  -3.836   1.230  -0.169  C12    6FK  26  
6FK  C13    C14  C  0  1  Y  N  N  22.116  56.968  -33.589  -4.471   2.402  -0.557  C13    6FK  27  
6FK  C14    C15  C  0  1  Y  N  N  22.539  56.603  -34.871  -5.274   3.080   0.339  C14    6FK  28  
6FK  C15    C16  C  0  1  Y  N  N  23.729  55.894  -35.059  -5.447   2.592   1.622  C15    6FK  29  
6FK  C16    C17  C  0  1  Y  N  N  24.490  55.557  -33.944  -4.816   1.424   2.011  C16    6FK  30  
6FK  C17    C18  C  0  1  Y  N  N  24.068  55.919  -32.659  -4.016   0.739   1.117  C17    6FK  31  
6FK  OP2    O7   O  0  1  N  N  N  24.119  61.355  -23.151   5.791  -0.529  -0.023  OP2    6FK  32  
6FK  OP3    O8   O  0  1  N  Y  N  25.555  59.815  -24.551   6.428   1.906   0.159  OP3    6FK  33  
6FK  H1     H1   H  0  1  N  N  N  23.938  59.223  -21.905   6.846   0.581  -2.343  H1     6FK  34  
6FK  H2     H2   H  0  1  N  N  N  21.392  58.944  -24.211   3.354   0.162   1.251  H2     6FK  35  
6FK  H3     H3   H  0  1  N  N  N  22.672  57.849  -24.837   3.782   1.873   1.494  H3     6FK  36  
6FK  H4     H4   H  0  1  N  N  N  20.688  59.530  -26.432   1.771   2.512   0.099  H4     6FK  37  
6FK  H5     H5   H  0  1  N  N  N  21.223  56.616  -25.862   1.618   1.016   2.721  H5     6FK  38  
6FK  H6     H6   H  0  1  N  N  N  19.461  57.748  -24.856   0.591   3.098   3.283  H6     6FK  39  
6FK  H7     H7   H  0  1  N  N  N  19.537  57.424  -28.227  -0.496   0.193   2.278  H7     6FK  40  
6FK  H8     H8   H  0  1  N  N  N  20.524  55.946  -27.964  -1.057   1.847   1.885  H8     6FK  41  
6FK  H9     H9   H  0  1  N  N  N  21.322  58.258  -29.368  -0.653   1.569  -0.410  H9     6FK  42  
6FK  H10    H10  H  0  1  N  N  N  22.741  56.032  -26.171   1.213  -1.747   1.053  H10    6FK  43  
6FK  H11    H11  H  0  1  N  N  N  24.583  53.481  -24.663   2.430  -3.594   1.758  H11    6FK  44  
6FK  H12    H12  H  0  1  N  N  N  23.523  54.829  -24.425   1.804  -5.143   1.585  H12    6FK  45  
6FK  H13    H13  H  0  1  N  N  N  19.603  58.597  -30.710  -1.790  -0.772  -2.883  H13    6FK  46  
6FK  H14    H14  H  0  1  N  N  N  19.928  57.374  -31.984  -2.809  -0.143  -4.200  H14    6FK  47  
6FK  H15    H15  H  0  1  N  N  N  19.953  56.895  -30.253  -1.331   0.727  -3.724  H15    6FK  48  
6FK  H16    H16  H  0  1  N  N  N  21.192  57.513  -33.464  -4.336   2.784  -1.558  H16    6FK  49  
6FK  H17    H17  H  0  1  N  N  N  21.938  56.872  -35.727  -5.768   3.992   0.039  H17    6FK  50  
6FK  H18    H18  H  0  1  N  N  N  24.052  55.613  -36.051  -6.075   3.123   2.321  H18    6FK  51  
6FK  H19    H19  H  0  1  N  N  N  25.414  55.012  -34.071  -4.952   1.045   3.013  H19    6FK  52  
6FK  H20    H20  H  0  1  N  N  N  24.666  55.644  -31.803  -3.524  -0.173   1.422  H20    6FK  53  
6FK  H21    H21  H  0  1  N  N  N  26.067  60.609  -24.448   6.310   2.808  -0.171  H21    6FK  54  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6FK  C15    C14    DOUB  Y  N   1  
6FK  C15    C16    SING  Y  N   2  
6FK  C14    C13    SING  Y  N   3  
6FK  C16    C17    DOUB  Y  N   4  
6FK  C13    C12    DOUB  Y  N   5  
6FK  C17    C12    SING  Y  N   6  
6FK  C12    N4     SING  N  N   7  
6FK  N4     C9     SING  N  N   8  
6FK  N4     C8     SING  N  N   9  
6FK  C10    C9     SING  N  N  10  
6FK  C9     O11    DOUB  N  N  11  
6FK  N7     C8     DOUB  Y  N  12  
6FK  N7     C5     SING  Y  N  13  
6FK  C8     N9     SING  Y  N  14  
6FK  O6     C6     DOUB  N  N  15  
6FK  C5     C6     SING  N  N  16  
6FK  C5     C4     DOUB  Y  N  17  
6FK  N9     "C1'"  SING  N  N  18  
6FK  N9     C4     SING  Y  N  19  
6FK  "C1'"  "C2'"  SING  N  N  20  
6FK  "C1'"  "O4'"  SING  N  N  21  
6FK  C6     N1     SING  N  N  22  
6FK  C4     N3     SING  N  N  23  
6FK  "C2'"  "C3'"  SING  N  N  24  
6FK  "O4'"  "C4'"  SING  N  N  25  
6FK  N1     C2     DOUB  N  N  26  
6FK  N3     C2     SING  N  N  27  
6FK  "C3'"  "C4'"  SING  N  N  28  
6FK  "C3'"  "O3'"  SING  N  N  29  
6FK  C2     N2     SING  N  N  30  
6FK  "C4'"  "C5'"  SING  N  N  31  
6FK  "C5'"  "O5'"  SING  N  N  32  
6FK  "O5'"  P      SING  N  N  33  
6FK  P      OP2    DOUB  N  N  34  
6FK  P      OP1    SING  N  N  35  
6FK  P      OP3    SING  N  N  36  
6FK  OP1    H1     SING  N  N  37  
6FK  "C5'"  H2     SING  N  N  38  
6FK  "C5'"  H3     SING  N  N  39  
6FK  "C4'"  H4     SING  N  N  40  
6FK  "C3'"  H5     SING  N  N  41  
6FK  "O3'"  H6     SING  N  N  42  
6FK  "C2'"  H7     SING  N  N  43  
6FK  "C2'"  H8     SING  N  N  44  
6FK  "C1'"  H9     SING  N  N  45  
6FK  N3     H10    SING  N  N  46  
6FK  N2     H11    SING  N  N  47  
6FK  N2     H12    SING  N  N  48  
6FK  C10    H13    SING  N  N  49  
6FK  C10    H14    SING  N  N  50  
6FK  C10    H15    SING  N  N  51  
6FK  C13    H16    SING  N  N  52  
6FK  C14    H17    SING  N  N  53  
6FK  C15    H18    SING  N  N  54  
6FK  C16    H19    SING  N  N  55  
6FK  C17    H20    SING  N  N  56  
6FK  OP3    H21    SING  N  N  57  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6FK  InChI             InChI                 1.03   "InChI=1S/C18H21N6O8P/c1-9(25)23(10-5-3-2-4-6-10)18-20-14-15(21-17(19)22-16(14)27)24(18)13-7-11(26)12(32-13)8-31-33(28,29)30/h2-6,11-13,26H,7-8H2,1H3,(H2,28,29,30)(H3,19,21,22,27)/t11-,12+,13+/m0/s1"  
6FK  InChIKey          InChI                 1.03   FWJWVOKTDMVYNP-YNEHKIRRSA-N  
6FK  SMILES_CANONICAL  CACTVS                3.385  "CC(=O)N(c1ccccc1)c2nc3C(=O)N=C(N)Nc3n2[C@H]4C[C@H](O)[C@@H](CO[P](O)(O)=O)O4"  
6FK  SMILES            CACTVS                3.385  "CC(=O)N(c1ccccc1)c2nc3C(=O)N=C(N)Nc3n2[CH]4C[CH](O)[CH](CO[P](O)(O)=O)O4"  
6FK  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.5  "CC(=O)N(c1ccccc1)c2nc3c(n2[C@H]4C[C@@H]([C@H](O4)COP(=O)(O)O)O)NC(=NC3=O)N"  
6FK  SMILES            "OpenEye OEToolkits"  2.0.5  "CC(=O)N(c1ccccc1)c2nc3c(n2C4CC(C(O4)COP(=O)(O)O)O)NC(=NC3=O)N"  
#
_pdbx_chem_comp_identifier.comp_id          6FK
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.5
_pdbx_chem_comp_identifier.identifier       "[(2~{R},3~{S},5~{R})-5-[2-azanyl-8-[ethanoyl(phenyl)amino]-6-oxidanylidene-3~{H}-purin-9-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6FK  "Create component"        2016-04-15  EBI   
6FK  "Other modification"      2016-04-19  EBI   
6FK  "Other modification"      2016-04-22  EBI   
6FK  "Initial release"         2016-06-01  RCSB  
6FK  "Other modification"      2016-06-02  RCSB  
6FK  "Modify one letter code"  2019-05-06  EBI   
6FK  "Other modification"      2019-05-07  EBI   
##
