data_5TK
#

_chem_comp.id                                   5TK
_chem_comp.name                                 "(2S,3R,4R,5S,6R)-6-(hydroxymethyl)-5-oxidanylsulfanyloxy-oxane-2,3,4-triol"
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H12 O7 S"
_chem_comp.mon_nstd_parent_comp_id              GLC
_chem_comp.pdbx_synonyms                        "(2~{S},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-5-oxidanylsulfanyloxy-oxane-2,3,4-triol"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-11-28
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       228.220
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5TK
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5EBZ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     5TK
_pdbx_chem_comp_synonyms.name        "(2~{S},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-5-oxidanylsulfanyloxy-oxane-2,3,4-triol"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5TK  SA   SA   S  0  1  N  N  N  96.523  91.906  -20.525  -2.772   0.490  -0.317  SA   5TK   1  
5TK  C1   C1   C  0  1  N  N  S  96.463  90.940  -25.410   2.535  -0.010  -0.173  C1   5TK   2  
5TK  C2   C2   C  0  1  N  N  R  97.091  92.232  -24.863   1.770   1.270  -0.519  C2   5TK   3  
5TK  O2S  O2S  O  0  1  N  N  N  97.629  91.316  -19.690  -3.938   0.289   0.640  O2S  5TK   4  
5TK  C3   C3   C  0  1  N  N  R  96.128  92.928  -23.904   0.407   1.246   0.179  C3   5TK   5  
5TK  C4   C4   C  0  1  N  N  S  95.691  91.958  -22.804  -0.350  -0.016  -0.246  C4   5TK   6  
5TK  C5   C5   C  0  1  N  N  R  95.121  90.666  -23.411   0.497  -1.247   0.089  C5   5TK   7  
5TK  C6   C6   C  0  1  N  N  N  93.809  90.870  -24.162  -0.225  -2.509  -0.387  C6   5TK   8  
5TK  O2   O2   O  0  1  N  N  N  98.299  91.926  -24.188   2.514   2.406  -0.074  O2   5TK   9  
5TK  O3   O3   O  0  1  N  N  N  94.991  93.398  -24.616  -0.344   2.402  -0.197  O3   5TK  10  
5TK  O4   O4   O  0  1  N  N  N  96.805  91.644  -21.980  -1.593  -0.087   0.454  O4   5TK  11  
5TK  O5   O5   O  0  1  N  N  N  96.082  90.070  -24.324   1.763  -1.146  -0.567  O5   5TK  12  
5TK  O6   O6   O  0  1  N  N  N  93.308  89.648  -24.686   0.508  -3.663   0.029  O6   5TK  13  
5TK  O1   O1   O  0  1  N  Y  N  97.394  90.277  -26.202   2.770  -0.058   1.236  O1   5TK  14  
5TK  H1   H1   H  0  1  N  N  N  95.575  91.207  -26.001   3.488  -0.018  -0.701  H1   5TK  15  
5TK  H2   H2   H  0  1  N  N  N  97.292  92.906  -25.709   1.627   1.329  -1.598  H2   5TK  16  
5TK  H3A  H3   H  0  1  N  N  N  97.454  91.480  -18.771  -4.785   0.608   0.300  H3A  5TK  17  
5TK  H3   H4   H  0  1  N  N  N  96.653  93.773  -23.435   0.550   1.238   1.259  H3   5TK  18  
5TK  H4   H5   H  0  1  N  N  N  94.903  92.439  -22.206  -0.538   0.016  -1.320  H4   5TK  19  
5TK  H5   H6   H  0  1  N  N  N  94.932  89.963  -22.586   0.650  -1.300   1.167  H5   5TK  20  
5TK  H61  H7   H  0  1  N  N  N  93.979  91.571  -24.993  -1.226  -2.539   0.045  H61  5TK  21  
5TK  H62  H8   H  0  1  N  N  N  93.065  91.293  -23.471  -0.299  -2.497  -1.474  H62  5TK  22  
5TK  HO2  H9   H  0  1  N  Y  N  98.685  92.726  -23.851   3.392   2.482  -0.473  HO2  5TK  23  
5TK  HO3  H10  H  0  1  N  Y  N  94.396  93.830  -24.014   0.080   3.239   0.036  HO3  5TK  24  
5TK  HO6  H11  H  0  1  N  Y  N  92.493  89.811  -25.146   0.107  -4.501  -0.239  HO6  5TK  25  
5TK  HO1  H12  H  0  1  N  Y  N  97.009  89.478  -26.542   3.251  -0.845   1.527  HO1  5TK  26  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5TK  C1   C2   SING  N  N   1  
5TK  C1   O5   SING  N  N   2  
5TK  C2   O2   SING  N  N   3  
5TK  C2   C3   SING  N  N   4  
5TK  O6   C6   SING  N  N   5  
5TK  O3   C3   SING  N  N   6  
5TK  O5   C5   SING  N  N   7  
5TK  C6   C5   SING  N  N   8  
5TK  C3   C4   SING  N  N   9  
5TK  C5   C4   SING  N  N  10  
5TK  C4   O4   SING  N  N  11  
5TK  O4   SA   SING  N  N  12  
5TK  SA   O2S  SING  N  N  13  
5TK  C1   O1   SING  N  N  14  
5TK  C1   H1   SING  N  N  15  
5TK  C2   H2   SING  N  N  16  
5TK  O2S  H3A  SING  N  N  17  
5TK  C3   H3   SING  N  N  18  
5TK  C4   H4   SING  N  N  19  
5TK  C5   H5   SING  N  N  20  
5TK  C6   H61  SING  N  N  21  
5TK  C6   H62  SING  N  N  22  
5TK  O2   HO2  SING  N  N  23  
5TK  O3   HO3  SING  N  N  24  
5TK  O6   HO6  SING  N  N  25  
5TK  O1   HO1  SING  N  N  26  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5TK  InChI             InChI                 1.03   "InChI=1S/C6H12O7S/c7-1-2-5(13-14-11)3(8)4(9)6(10)12-2/h2-11H,1H2/t2-,3-,4-,5-,6+/m1/s1"  
5TK  InChIKey          InChI                 1.03   LYKOPFRBCNKSPJ-UKFBFLRUSA-N  
5TK  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@@H]1OSO"  
5TK  SMILES            CACTVS                3.385  "OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1OSO"  
5TK  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.4  "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)OSO)O"  
5TK  SMILES            "OpenEye OEToolkits"  2.0.4  "C(C1C(C(C(C(O1)O)O)O)OSO)O"  
#
_pdbx_chem_comp_identifier.comp_id          5TK
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.4
_pdbx_chem_comp_identifier.identifier       "(2~{S},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-5-oxidanylsulfanyloxy-oxane-2,3,4-triol"
#
_pdbx_chem_comp_related.comp_id            5TK
_pdbx_chem_comp_related.related_comp_id    GLC
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  5TK  C1   GLC  C1   "Carbohydrate core"  
 2  5TK  C2   GLC  C2   "Carbohydrate core"  
 3  5TK  C3   GLC  C3   "Carbohydrate core"  
 4  5TK  C4   GLC  C4   "Carbohydrate core"  
 5  5TK  C5   GLC  C5   "Carbohydrate core"  
 6  5TK  C6   GLC  C6   "Carbohydrate core"  
 7  5TK  O1   GLC  O1   "Carbohydrate core"  
 8  5TK  O2   GLC  O2   "Carbohydrate core"  
 9  5TK  O3   GLC  O3   "Carbohydrate core"  
10  5TK  O4   GLC  O4   "Carbohydrate core"  
11  5TK  O5   GLC  O5   "Carbohydrate core"  
12  5TK  O6   GLC  O6   "Carbohydrate core"  
13  5TK  H1   GLC  H1   "Carbohydrate core"  
14  5TK  HO3  GLC  HO3  "Carbohydrate core"  
15  5TK  HO6  GLC  HO6  "Carbohydrate core"  
16  5TK  HO1  GLC  HO1  "Carbohydrate core"  
17  5TK  H2   GLC  H2   "Carbohydrate core"  
18  5TK  H3   GLC  H3   "Carbohydrate core"  
19  5TK  H4   GLC  H4   "Carbohydrate core"  
20  5TK  H5   GLC  H5   "Carbohydrate core"  
21  5TK  H61  GLC  H61  "Carbohydrate core"  
22  5TK  H62  GLC  H62  "Carbohydrate core"  
23  5TK  HO2  GLC  HO2  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
5TK  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
5TK  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
5TK  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
5TK  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5TK  "Create component"          2015-11-28  RCSB  
5TK  "Initial release"           2016-11-02  RCSB  
5TK  "Other modification"        2020-07-03  RCSB  
5TK  "Modify parent residue"     2020-07-17  RCSB  
5TK  "Modify name"               2020-07-17  RCSB  
5TK  "Modify synonyms"           2020-07-17  RCSB  
5TK  "Modify internal type"      2020-07-17  RCSB  
5TK  "Modify linking type"       2020-07-17  RCSB  
5TK  "Modify atom id"            2020-07-17  RCSB  
5TK  "Modify component atom id"  2020-07-17  RCSB  
5TK  "Modify leaving atom flag"  2020-07-17  RCSB  
##
