data_4PK
# 
_chem_comp.id                                    4PK 
_chem_comp.name                                  "N-[(benzyloxy)carbonyl]-O-carbamimidamido-L-homoseryl-N-{(3S,4S)-3-hydroxy-6-methyl-1-oxo-1-[(2-phenylethyl)amino]heptan-4-yl}-L-valinamide" 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H51 N7 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-05-01 
_chem_comp.pdbx_modified_date                    2015-07-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        669.811 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     4PK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4ZL4 
_chem_comp.pdbx_subcomponent_list                "PHQ GGB VAL STA PEA" 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
4PK C10 C1  C 0 1 Y N N 0.502  107.397 39.223 -9.620  2.716  -0.985 C10   PHQ 1  
4PK C02 C7  C 0 1 N N N -1.594 104.168 40.969 -5.638  1.361  0.523  C02   PHQ 2  
4PK O03 O1  O 0 1 N N N -0.918 105.333 41.034 -6.569  2.147  -0.052 O03   PHQ 3  
4PK C04 C8  C 0 1 N N N -1.556 106.350 40.250 -7.795  2.369  0.694  C04   PHQ 4  
4PK C05 C9  C 0 1 Y N N -0.700 106.694 39.048 -8.710  3.265  -0.100 C05   PHQ 5  
4PK C06 C10 C 0 1 Y N N -1.108 106.307 37.757 -8.640  4.637  0.056  C06   PHQ 6  
4PK C07 C11 C 0 1 Y N N -0.316 106.628 36.644 -9.479  5.459  -0.672 C07   PHQ 7  
4PK C08 C12 C 0 1 Y N N 0.885  107.333 36.824 -10.389 4.910  -1.556 C08   PHQ 8  
4PK C09 C13 C 0 1 Y N N 1.296  107.718 38.111 -10.455 3.539  -1.717 C09   PHQ 9  
4PK O11 O2  O 0 1 N N N -2.824 104.147 40.998 -5.845  0.874  1.617  O11   PHQ 10 
4PK N01 N1  N 0 1 N N N -0.896 102.990 40.863 -4.477  1.115  -0.116 N     GGB 11 
4PK C12 C14 C 0 1 N N S -1.635 101.724 40.813 -3.465  0.260  0.509  CA    GGB 12 
4PK C13 C2  C 0 1 N N N -0.857 100.674 40.013 -3.775  -1.206 0.201  CB    GGB 13 
4PK C14 C15 C 0 1 N N N -0.390 101.204 38.659 -5.098  -1.597 0.863  CG    GGB 14 
4PK C20 C4  C 0 1 N N N -1.747 101.084 42.223 -2.105  0.611  -0.037 C     GGB 15 
4PK O15 O3  O 0 1 N N N -1.547 101.532 37.905 -5.388  -2.966 0.575  OD    GGB 16 
4PK N16 N2  N 0 1 N N N -2.475 100.488 37.870 -6.599  -3.430 1.144  NE    GGB 17 
4PK C17 C3  C 0 1 N N N -2.666 99.871  36.686 -6.998  -4.731 0.946  CZ    GGB 18 
4PK N18 N3  N 0 1 N N N -1.966 100.250 35.604 -6.261  -5.537 0.234  NH1   GGB 19 
4PK N19 N4  N 0 1 N N N -3.559 98.876  36.576 -8.173  -5.181 1.498  NH2   GGB 20 
4PK O21 O4  O 0 1 N N N -0.972 101.329 43.148 -1.992  1.489  -0.867 OA1   GGB 21 
4PK N22 N5  N 0 1 N N N -2.764 100.187 42.437 -1.013  -0.050 0.396  N     VAL 22 
4PK C23 C16 C 0 1 N N S -2.928 99.485  43.704 0.309   0.291  -0.135 CA    VAL 23 
4PK C27 C18 C 0 1 N N N -3.431 98.088  43.235 1.224   -0.900 -0.007 C     VAL 24 
4PK O28 O5  O 0 1 N N N -4.625 97.880  42.990 0.949   -1.797 0.762  O     VAL 25 
4PK C24 C5  C 0 1 N N N -3.945 100.149 44.634 0.888   1.466  0.655  CB    VAL 26 
4PK C26 C6  C 0 1 N N N -3.750 99.434  45.992 0.032   2.712  0.417  CG1   VAL 27 
4PK C25 C17 C 0 1 N N N -3.652 101.662 44.774 0.890   1.126  2.147  CG2   VAL 28 
4PK N29 N6  N 0 1 N N N -2.512 97.082  43.055 2.348   -0.968 -0.748 N     STA 29 
4PK C30 C19 C 0 1 N N S -2.940 95.766  42.564 3.181   -2.173 -0.706 CA    STA 30 
4PK C31 C20 C 0 1 N N N -2.222 95.495  41.221 2.638   -3.202 -1.700 CB    STA 31 
4PK C32 C21 C 0 1 N N N -2.461 96.604  40.177 1.247   -3.657 -1.255 CG    STA 32 
4PK C33 C22 C 0 1 N N N -1.546 96.372  38.960 0.653   -4.590 -2.312 CD1   STA 33 
4PK C34 C23 C 0 1 N N N -3.929 96.623  39.706 1.354   -4.399 0.078  CD2   STA 34 
4PK C35 C24 C 0 1 N N S -2.529 94.674  43.563 4.620   -1.812 -1.079 CH    STA 35 
4PK O36 O6  O 0 1 N N N -1.160 94.882  43.910 4.645   -1.261 -2.398 OH    STA 36 
4PK C37 C25 C 0 1 N N N -3.425 94.712  44.814 5.161   -0.783 -0.086 CM    STA 37 
4PK C38 C26 C 0 1 N N N -4.793 94.041  44.508 6.616   -0.518 -0.379 C     STA 38 
4PK O39 O7  O 0 1 N N N -5.797 94.728  44.307 7.165   -1.097 -1.293 O     STA 39 
4PK C43 C29 C 0 1 Y N N -6.232 91.542  46.601 10.717  1.910  0.790  "C1'" PEA 40 
4PK C44 C30 C 0 1 Y N N -7.376 92.186  47.082 11.073  2.915  -0.090 "C6'" PEA 41 
4PK C45 C31 C 0 1 Y N N -7.323 92.851  48.315 12.407  3.161  -0.355 "C5'" PEA 42 
4PK C46 C32 C 0 1 Y N N -6.128 92.873  49.052 13.385  2.403  0.261  "C4'" PEA 43 
4PK C47 C33 C 0 1 Y N N -4.982 92.234  48.562 13.029  1.398  1.141  "C3'" PEA 44 
4PK C48 C34 C 0 1 Y N N -5.037 91.568  47.332 11.695  1.151  1.405  "C2'" PEA 45 
4PK C42 C28 C 0 1 N N N -6.287 90.841  45.246 9.262   1.646  1.083  C2    PEA 46 
4PK C41 C27 C 0 1 N N N -6.143 91.971  44.211 8.720   0.617  0.089  C1    PEA 47 
4PK N40 N7  N 0 1 N N N -4.874 92.661  44.475 7.307   0.360  0.375  N     PEA 48 
4PK H1  H1  H 0 1 N N N 0.816  107.691 40.214 -9.674  1.644  -1.107 H1    PHQ 49 
4PK H9  H9  H 0 1 N N N -1.696 107.250 40.866 -8.289  1.413  0.873  H9    PHQ 50 
4PK H10 H10 H 0 1 N N N -2.535 105.984 39.907 -7.561  2.842  1.647  H10   PHQ 51 
4PK H11 H11 H 0 1 N N N -2.031 105.763 37.623 -7.929  5.066  0.747  H11   PHQ 52 
4PK H12 H12 H 0 1 N N N -0.629 106.334 35.653 -9.428  6.531  -0.546 H12   PHQ 53 
4PK H13 H13 H 0 1 N N N 1.496  107.581 35.969 -11.045 5.553  -2.125 H13   PHQ 54 
4PK H14 H14 H 0 1 N N N 2.221  108.260 38.244 -11.165 3.110  -2.408 H14   PHQ 55 
4PK H8  H8  H 0 1 N N N 0.103  102.995 40.820 -4.312  1.504  -0.989 HN2   GGB 56 
4PK H15 H15 H 0 1 N N N -2.638 101.865 40.383 -3.474  0.415  1.588  HCA   GGB 57 
4PK H2  H2  H 0 1 N N N -1.508 99.803  39.846 -3.853  -1.342 -0.877 HCB1  GGB 58 
4PK H3  H3  H 0 1 N N N 0.024  100.367 40.596 -2.975  -1.836 0.590  HCB2  GGB 59 
4PK H16 H16 H 0 1 N N N 0.193  100.432 38.135 -5.020  -1.460 1.941  HCG1  GGB 60 
4PK H17 H17 H 0 1 N N N 0.232  102.100 38.801 -5.898  -0.967 0.474  HCG2  GGB 61 
4PK H18 H18 H 0 1 N N N -2.977 100.210 38.689 -7.147  -2.830 1.674  HNE   GGB 62 
4PK H19 H19 H 0 1 N N N -1.337 101.000 35.809 -5.432  -5.219 -0.156 HN1   GGB 63 
4PK H20 H20 H 0 1 N N N -4.088 98.588  37.375 -8.721  -4.582 2.028  HN21  GGB 64 
4PK H21 H21 H 0 1 N N N -3.696 98.422  35.695 -8.455  -6.099 1.358  HN22  GGB 65 
4PK H22 H22 H 0 1 N N N -3.414 100.009 41.699 -1.103  -0.752 1.060  H     VAL 66 
4PK H23 H23 H 0 1 N N N -1.963 99.375  44.221 0.218   0.568  -1.185 HA    VAL 67 
4PK H4  H4  H 0 1 N N N -4.968 99.991  44.263 1.909   1.658  0.325  HB    VAL 68 
4PK H5  H5  H 0 1 N N N -4.449 99.852  46.731 -0.957  2.560  0.848  HG11  VAL 69 
4PK H6  H6  H 0 1 N N N -3.945 98.358  45.871 0.506   3.573  0.888  HG12  VAL 70 
4PK H7  H7  H 0 1 N N N -2.717 99.583  46.340 -0.061  2.889  -0.654 HG13  VAL 71 
4PK H24 H24 H 0 1 N N N -4.394 102.119 45.446 1.500   0.239  2.317  HG21  VAL 72 
4PK H25 H25 H 0 1 N N N -2.644 101.803 45.191 1.303   1.963  2.710  HG22  VAL 73 
4PK H26 H26 H 0 1 N N N -3.710 102.140 43.785 -0.131  0.934  2.477  HG23  VAL 74 
4PK H27 H27 H 0 1 N N N -1.547 97.247  43.259 2.606   -0.220 -1.308 HN2   STA 75 
4PK H28 H28 H 0 1 N N N -4.029 95.742  42.413 3.161   -2.593 0.300  HA    STA 76 
4PK H29 H29 H 0 1 N N N -2.591 94.543  40.812 2.575   -2.752 -2.690 HB1   STA 77 
4PK H30 H30 H 0 1 N N N -1.141 95.419  41.410 3.308   -4.062 -1.734 HB2   STA 78 
4PK H31 H31 H 0 1 N N N -2.217 97.578  40.627 0.601   -2.786 -1.136 HG    STA 79 
4PK H32 H32 H 0 1 N N N -0.496 96.357  39.288 1.298   -5.460 -2.432 HD11  STA 80 
4PK H33 H33 H 0 1 N N N -1.797 95.409  38.491 -0.338  -4.913 -1.996 HD12  STA 81 
4PK H34 H34 H 0 1 N N N -1.691 97.184  38.232 0.577   -4.061 -3.262 HD13  STA 82 
4PK H35 H35 H 0 1 N N N -4.590 96.788  40.570 1.777   -3.734 0.831  HD21  STA 83 
4PK H36 H36 H 0 1 N N N -4.069 97.434  38.977 0.362   -4.722 0.395  HD22  STA 84 
4PK H37 H37 H 0 1 N N N -4.175 95.660  39.235 1.999   -5.269 -0.041 HD23  STA 85 
4PK H38 H38 H 0 1 N N N -2.649 93.694  43.078 5.239   -2.708 -1.048 HC    STA 86 
4PK H39 H39 H 0 1 N N N -0.885 94.216  44.529 4.114   -0.459 -2.499 HH    STA 87 
4PK H40 H40 H 0 1 N N N -2.929 94.171  45.634 4.597   0.145  -0.180 HM1   STA 88 
4PK H41 H41 H 0 1 N N N -3.591 95.758  45.112 5.060   -1.168 0.929  HM2   STA 89 
4PK H47 H47 H 0 1 N N N -8.292 92.171  46.509 10.309  3.507  -0.571 "H6'" PEA 90 
4PK H48 H48 H 0 1 N N N -8.202 93.347  48.698 12.686  3.945  -1.043 "H5'" PEA 91 
4PK H49 H49 H 0 1 N N N -6.092 93.386  50.002 14.428  2.595  0.054  "H4'" PEA 92 
4PK H50 H50 H 0 1 N N N -4.063 92.255  49.129 13.793  0.805  1.622  "H3'" PEA 93 
4PK H51 H51 H 0 1 N N N -4.158 91.074  46.946 11.417  0.366  2.093  "H2'" PEA 94 
4PK H45 H45 H 0 1 N N N -7.247 90.319  45.119 9.161   1.260  2.098  H21   PEA 95 
4PK H46 H46 H 0 1 N N N -5.462 90.120  45.149 8.698   2.574  0.989  H22   PEA 96 
4PK H43 H43 H 0 1 N N N -6.981 92.677  44.309 8.822   1.003  -0.925 H11   PEA 97 
4PK H44 H44 H 0 1 N N N -6.136 91.549  43.195 9.284   -0.311 0.183  H12   PEA 98 
4PK H42 H42 H 0 1 N N N -4.048 92.120  44.635 6.867   0.822  1.105  HN2   PEA 99 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
4PK N18 C17 DOUB N N 1   
4PK N19 C17 SING N N 2   
4PK C07 C08 DOUB Y N 3   
4PK C07 C06 SING Y N 4   
4PK C17 N16 SING N N 5   
4PK C08 C09 SING Y N 6   
4PK C06 C05 DOUB Y N 7   
4PK N16 O15 SING N N 8   
4PK O15 C14 SING N N 9   
4PK C09 C10 DOUB Y N 10  
4PK C14 C13 SING N N 11  
4PK C33 C32 SING N N 12  
4PK C05 C10 SING Y N 13  
4PK C05 C04 SING N N 14  
4PK C34 C32 SING N N 15  
4PK C13 C12 SING N N 16  
4PK C32 C31 SING N N 17  
4PK C04 O03 SING N N 18  
4PK C12 N01 SING N N 19  
4PK C12 C20 SING N N 20  
4PK N01 C02 SING N N 21  
4PK C02 O11 DOUB N N 22  
4PK C02 O03 SING N N 23  
4PK C31 C30 SING N N 24  
4PK C20 N22 SING N N 25  
4PK C20 O21 DOUB N N 26  
4PK N22 C23 SING N N 27  
4PK C30 N29 SING N N 28  
4PK C30 C35 SING N N 29  
4PK O28 C27 DOUB N N 30  
4PK N29 C27 SING N N 31  
4PK C27 C23 SING N N 32  
4PK C35 O36 SING N N 33  
4PK C35 C37 SING N N 34  
4PK C23 C24 SING N N 35  
4PK C41 N40 SING N N 36  
4PK C41 C42 SING N N 37  
4PK O39 C38 DOUB N N 38  
4PK N40 C38 SING N N 39  
4PK C38 C37 SING N N 40  
4PK C24 C25 SING N N 41  
4PK C24 C26 SING N N 42  
4PK C42 C43 SING N N 43  
4PK C43 C44 DOUB Y N 44  
4PK C43 C48 SING Y N 45  
4PK C44 C45 SING Y N 46  
4PK C48 C47 DOUB Y N 47  
4PK C45 C46 DOUB Y N 48  
4PK C47 C46 SING Y N 49  
4PK C10 H1  SING N N 50  
4PK C13 H2  SING N N 51  
4PK C13 H3  SING N N 52  
4PK C24 H4  SING N N 53  
4PK C26 H5  SING N N 54  
4PK C26 H6  SING N N 55  
4PK C26 H7  SING N N 56  
4PK N01 H8  SING N N 57  
4PK C04 H9  SING N N 58  
4PK C04 H10 SING N N 59  
4PK C06 H11 SING N N 60  
4PK C07 H12 SING N N 61  
4PK C08 H13 SING N N 62  
4PK C09 H14 SING N N 63  
4PK C12 H15 SING N N 64  
4PK C14 H16 SING N N 65  
4PK C14 H17 SING N N 66  
4PK N16 H18 SING N N 67  
4PK N18 H19 SING N N 68  
4PK N19 H20 SING N N 69  
4PK N19 H21 SING N N 70  
4PK N22 H22 SING N N 71  
4PK C23 H23 SING N N 72  
4PK C25 H24 SING N N 73  
4PK C25 H25 SING N N 74  
4PK C25 H26 SING N N 75  
4PK N29 H27 SING N N 76  
4PK C30 H28 SING N N 77  
4PK C31 H29 SING N N 78  
4PK C31 H30 SING N N 79  
4PK C32 H31 SING N N 80  
4PK C33 H32 SING N N 81  
4PK C33 H33 SING N N 82  
4PK C33 H34 SING N N 83  
4PK C34 H35 SING N N 84  
4PK C34 H36 SING N N 85  
4PK C34 H37 SING N N 86  
4PK C35 H38 SING N N 87  
4PK O36 H39 SING N N 88  
4PK C37 H40 SING N N 89  
4PK C37 H41 SING N N 90  
4PK N40 H42 SING N N 91  
4PK C41 H43 SING N N 92  
4PK C41 H44 SING N N 93  
4PK C42 H45 SING N N 94  
4PK C42 H46 SING N N 95  
4PK C44 H47 SING N N 96  
4PK C45 H48 SING N N 97  
4PK C46 H49 SING N N 98  
4PK C47 H50 SING N N 99  
4PK C48 H51 SING N N 100 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
4PK SMILES           ACDLabs              12.01 "c2c(COC(=O)NC(C(NC(C(C)C)C(=O)NC(C(O)CC(=O)NCCc1ccccc1)CC(C)C)=O)CCON\C(=N)N)cccc2" 
4PK InChI            InChI                1.03  
;InChI=1S/C34H51N7O7/c1-22(2)19-27(28(42)20-29(43)37-17-15-24-11-7-5-8-12-24)38-32(45)30(23(3)4)40-31(44)26(16-18-48-41-33(35)36)39-34(46)47-21-25-13-9-6-10-14-25/h5-14,22-23,26-28,30,42H,15-21H2,1-4H3,(H,37,43)(H,38,45)(H,39,46)(H,40,44)(H4,35,36,41)/t26-,27-,28-,30-/m0/s1
;
4PK InChIKey         InChI                1.03  VAHRPHLZONNTFF-NUISNXNRSA-N 
4PK SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)[C@@H](NC(=O)[C@H](CCONC(N)=N)NC(=O)OCc1ccccc1)C(C)C)[C@@H](O)CC(=O)NCCc2ccccc2" 
4PK SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)[CH](NC(=O)[CH](CCONC(N)=N)NC(=O)OCc1ccccc1)C(C)C)[CH](O)CC(=O)NCCc2ccccc2" 
4PK SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "[H]/N=C(/N)\NOCC[C@@H](C(=O)N[C@@H](C(C)C)C(=O)N[C@@H](CC(C)C)[C@H](CC(=O)NCCc1ccccc1)O)NC(=O)OCc2ccccc2" 
4PK SMILES           "OpenEye OEToolkits" 1.9.2 "CC(C)CC(C(CC(=O)NCCc1ccccc1)O)NC(=O)C(C(C)C)NC(=O)C(CCONC(=N)N)NC(=O)OCc2ccccc2" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
4PK "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(benzyloxy)carbonyl]-O-carbamimidamido-L-homoseryl-N-{(3S,4S)-3-hydroxy-6-methyl-1-oxo-1-[(2-phenylethyl)amino]heptan-4-yl}-L-valinamide" 
4PK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 
"(phenylmethyl) N-[(2S)-4-carbamimidamidooxy-1-[[(2S)-3-methyl-1-[[(3S,4S)-6-methyl-3-oxidanyl-1-oxidanylidene-1-(2-phenylethylamino)heptan-4-yl]amino]-1-oxidanylidene-butan-2-yl]amino]-1-oxidanylidene-butan-2-yl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
4PK "Create component" 2015-05-01 RCSB 
4PK "Initial release"  2015-07-15 RCSB 
# 
