data_1XK
# 
_chem_comp.id                                    1XK 
_chem_comp.name                                  "4-[(3S)-3-cyclopropyl-3-(hydroxymethyl)-2-oxidanylidene-pyrrolidin-1-yl]-N-[[3-fluoranyl-5-(1-methylpyrazol-4-yl)phenyl]methyl]-6-methyl-pyridine-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H28 F N5 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-07-08 
_chem_comp.pdbx_modified_date                    2022-09-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        477.531 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     1XK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7F97 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
1XK C4  C1  C 0 1 Y N N 25.183 -19.921 -8.404  2.434   -0.232 -0.030 C4  1XK 1  
1XK C   C2  C 0 1 N N N 27.626 -22.265 -10.946 0.909   -0.045 -3.980 C   1XK 2  
1XK N   N1  N 0 1 Y N N 27.173 -21.190 -8.820  0.646   -0.331 -1.570 N   1XK 3  
1XK N1  N2  N 0 1 N N N 28.174 -20.281 -6.396  -1.186  -0.818 0.510  N1  1XK 4  
1XK C3  C3  C 0 1 Y N N 24.745 -20.153 -9.691  3.323   0.005  -1.076 C3  1XK 5  
1XK C2  C4  C 0 1 Y N N 25.542 -20.908 -10.550 2.817   0.066  -2.373 C2  1XK 6  
1XK C1  C5  C 0 1 Y N N 26.744 -21.419 -10.078 1.461   -0.109 -2.579 C1  1XK 7  
1XK O   O1  O 0 1 N N N 26.076 -19.783 -5.760  0.519   -0.724 1.929  O   1XK 8  
1XK C10 C6  C 0 1 Y N N 30.160 -22.871 -3.258  -5.263  -2.595 0.120  C10 1XK 9  
1XK C11 C7  C 0 1 Y N N 29.085 -23.386 -2.582  -6.082  -1.489 -0.005 C11 1XK 10 
1XK C12 C8  C 0 1 Y N N 27.861 -22.731 -2.698  -5.619  -0.236 0.390  C12 1XK 11 
1XK C13 C9  C 0 1 Y N N 27.763 -21.580 -3.481  -4.333  -0.105 0.909  C13 1XK 12 
1XK C14 C10 C 0 1 Y N N 26.666 -23.276 -2.007  -6.494  0.957  0.257  C14 1XK 13 
1XK C15 C11 C 0 1 Y N N 25.369 -22.749 -1.908  -6.160  2.278  0.613  C15 1XK 14 
1XK C16 C12 C 0 1 N N N 24.801 -25.648 -0.021  -9.525  2.716  -0.619 C16 1XK 15 
1XK C17 C13 C 0 1 Y N N 26.610 -24.440 -1.275  -7.766  0.973  -0.237 C17 1XK 16 
1XK C18 C14 C 0 1 N N N 22.714 -18.805 -9.161  5.691   0.431  -1.870 C18 1XK 17 
1XK C19 C15 C 0 1 N N N 21.863 -17.978 -10.107 7.054   0.118  -1.213 C19 1XK 18 
1XK C20 C16 C 0 1 N N S 21.616 -18.921 -11.304 6.743   0.350  0.283  C20 1XK 19 
1XK C21 C17 C 0 1 N N N 20.299 -19.680 -11.116 7.495   -0.662 1.151  C21 1XK 20 
1XK C22 C18 C 0 1 N N N 21.836 -18.258 -12.680 7.107   1.779  0.693  C22 1XK 21 
1XK C23 C19 C 0 1 N N N 22.587 -16.932 -12.763 6.781   2.209  2.124  C23 1XK 22 
1XK C24 C20 C 0 1 N N N 21.137 -17.028 -13.120 5.957   2.754  0.955  C24 1XK 23 
1XK C25 C21 C 0 1 N N N 22.807 -19.852 -11.257 5.250   0.133  0.391  C25 1XK 24 
1XK C5  C22 C 0 1 Y N N 26.395 -20.449 -8.017  1.083   -0.398 -0.318 C5  1XK 25 
1XK C6  C23 C 0 1 N N N 26.863 -20.164 -6.618  0.124   -0.657 0.782  C6  1XK 26 
1XK C7  C24 C 0 1 N N N 28.746 -19.917 -5.108  -2.134  -1.074 1.597  C7  1XK 27 
1XK C8  C25 C 0 1 Y N N 28.870 -21.100 -4.182  -3.523  -1.215 1.030  C8  1XK 28 
1XK C9  C26 C 0 1 Y N N 30.092 -21.755 -4.056  -3.986  -2.459 0.642  C9  1XK 29 
1XK F   F1  F 0 1 N N N 31.358 -23.486 -3.114  -5.709  -3.812 -0.262 F   1XK 30 
1XK N2  N3  N 0 1 Y N N 24.570 -23.529 -1.196  -7.187  3.042  0.348  N2  1XK 31 
1XK N3  N4  N 0 1 Y N N 25.354 -24.562 -0.820  -8.207  2.246  -0.186 N3  1XK 32 
1XK N4  N5  N 0 1 N N N 23.470 -19.655 -10.084 4.686   0.177  -0.831 N4  1XK 33 
1XK O1  O2  O 0 1 N N N 19.513 -19.603 -12.294 7.173   -1.987 0.723  O1  1XK 34 
1XK O2  O3  O 0 1 N N N 23.130 -20.637 -12.124 4.648   -0.054 1.426  O2  1XK 35 
1XK H1  H1  H 0 1 N N N 24.589 -19.339 -7.715  2.788   -0.290 0.989  H1  1XK 36 
1XK H2  H2  H 0 1 N N N 28.517 -22.569 -10.378 0.922   -1.041 -4.421 H2  1XK 37 
1XK H3  H3  H 0 1 N N N 27.074 -23.160 -11.268 -0.116  0.325  -3.949 H3  1XK 38 
1XK H4  H4  H 0 1 N N N 27.934 -21.687 -11.830 1.520   0.627  -4.581 H4  1XK 39 
1XK H5  H5  H 0 1 N N N 28.770 -20.623 -7.123  -1.501  -0.765 -0.406 H5  1XK 40 
1XK H6  H6  H 0 1 N N N 25.229 -21.093 -11.567 3.477   0.248  -3.208 H6  1XK 41 
1XK H7  H7  H 0 1 N N N 29.184 -24.275 -1.976  -7.078  -1.596 -0.408 H7  1XK 42 
1XK H8  H8  H 0 1 N N N 26.821 -21.056 -3.545  -3.970  0.865  1.215  H8  1XK 43 
1XK H9  H9  H 0 1 N N N 25.059 -21.818 -2.359  -5.219  2.603  1.033  H9  1XK 44 
1XK H10 H10 H 0 1 N N N 23.737 -25.453 0.177   -10.222 2.666  0.218  H10 1XK 45 
1XK H11 H11 H 0 1 N N N 24.904 -26.596 -0.569  -9.448  3.746  -0.967 H11 1XK 46 
1XK H12 H12 H 0 1 N N N 25.345 -25.715 0.933   -9.888  2.084  -1.430 H12 1XK 47 
1XK H13 H13 H 0 1 N N N 27.425 -25.127 -1.100  -8.318  0.120  -0.603 H13 1XK 48 
1XK H14 H14 H 0 1 N N N 23.385 -18.167 -8.567  5.655   1.474  -2.184 H14 1XK 49 
1XK H15 H15 H 0 1 N N N 22.089 -19.408 -8.486  5.525   -0.226 -2.724 H15 1XK 50 
1XK H16 H16 H 0 1 N N N 22.400 -17.073 -10.426 7.346   -0.917 -1.395 H16 1XK 51 
1XK H17 H17 H 0 1 N N N 20.913 -17.693 -9.631  7.823   0.806  -1.564 H17 1XK 52 
1XK H18 H18 H 0 1 N N N 19.741 -19.236 -10.278 8.568   -0.499 1.052  H18 1XK 53 
1XK H19 H19 H 0 1 N N N 20.517 -20.735 -10.894 7.203   -0.535 2.193  H19 1XK 54 
1XK H20 H20 H 0 1 N N N 22.081 -18.967 -13.484 8.015   2.181  0.241  H20 1XK 55 
1XK H21 H21 H 0 1 N N N 23.341 -16.771 -13.548 6.306   1.474  2.775  H21 1XK 56 
1XK H22 H22 H 0 1 N N N 22.898 -16.413 -11.844 7.473   2.893  2.615  H22 1XK 57 
1XK H23 H23 H 0 1 N N N 20.383 -16.566 -12.466 6.108   3.796  0.676  H23 1XK 58 
1XK H24 H24 H 0 1 N N N 20.826 -16.924 -14.170 4.942   2.377  0.836  H24 1XK 59 
1XK H25 H25 H 0 1 N N N 29.746 -19.491 -5.273  -1.856  -1.994 2.112  H25 1XK 60 
1XK H26 H26 H 0 1 N N N 28.100 -19.163 -4.634  -2.112  -0.243 2.302  H26 1XK 61 
1XK H27 H27 H 0 1 N N N 30.968 -21.393 -4.575  -3.352  -3.327 0.747  H27 1XK 62 
1XK H28 H28 H 0 1 N N N 18.700 -20.077 -12.164 7.615   -2.682 1.230  H28 1XK 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
1XK C24 C23 SING N N 1  
1XK C24 C22 SING N N 2  
1XK C23 C22 SING N N 3  
1XK C22 C20 SING N N 4  
1XK O1  C21 SING N N 5  
1XK O2  C25 DOUB N N 6  
1XK C20 C25 SING N N 7  
1XK C20 C21 SING N N 8  
1XK C20 C19 SING N N 9  
1XK C25 N4  SING N N 10 
1XK C   C1  SING N N 11 
1XK C2  C1  DOUB Y N 12 
1XK C2  C3  SING Y N 13 
1XK C19 C18 SING N N 14 
1XK N4  C3  SING N N 15 
1XK N4  C18 SING N N 16 
1XK C1  N   SING Y N 17 
1XK C3  C4  DOUB Y N 18 
1XK N   C5  DOUB Y N 19 
1XK C4  C5  SING Y N 20 
1XK C5  C6  SING N N 21 
1XK C6  N1  SING N N 22 
1XK C6  O   DOUB N N 23 
1XK N1  C7  SING N N 24 
1XK C7  C8  SING N N 25 
1XK C8  C9  DOUB Y N 26 
1XK C8  C13 SING Y N 27 
1XK C9  C10 SING Y N 28 
1XK C13 C12 DOUB Y N 29 
1XK C10 F   SING N N 30 
1XK C10 C11 DOUB Y N 31 
1XK C12 C11 SING Y N 32 
1XK C12 C14 SING N N 33 
1XK C14 C15 SING Y N 34 
1XK C14 C17 DOUB Y N 35 
1XK C15 N2  DOUB Y N 36 
1XK C17 N3  SING Y N 37 
1XK N2  N3  SING Y N 38 
1XK N3  C16 SING N N 39 
1XK C4  H1  SING N N 40 
1XK C   H2  SING N N 41 
1XK C   H3  SING N N 42 
1XK C   H4  SING N N 43 
1XK N1  H5  SING N N 44 
1XK C2  H6  SING N N 45 
1XK C11 H7  SING N N 46 
1XK C13 H8  SING N N 47 
1XK C15 H9  SING N N 48 
1XK C16 H10 SING N N 49 
1XK C16 H11 SING N N 50 
1XK C16 H12 SING N N 51 
1XK C17 H13 SING N N 52 
1XK C18 H14 SING N N 53 
1XK C18 H15 SING N N 54 
1XK C19 H16 SING N N 55 
1XK C19 H17 SING N N 56 
1XK C21 H18 SING N N 57 
1XK C21 H19 SING N N 58 
1XK C22 H20 SING N N 59 
1XK C23 H21 SING N N 60 
1XK C23 H22 SING N N 61 
1XK C24 H23 SING N N 62 
1XK C24 H24 SING N N 63 
1XK C7  H25 SING N N 64 
1XK C7  H26 SING N N 65 
1XK C9  H27 SING N N 66 
1XK O1  H28 SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
1XK InChI            InChI                1.03  "InChI=1S/C26H28FN5O3/c1-16-7-22(32-6-5-26(15-33,25(32)35)20-3-4-20)11-23(30-16)24(34)28-12-17-8-18(10-21(27)9-17)19-13-29-31(2)14-19/h7-11,13-14,20,33H,3-6,12,15H2,1-2H3,(H,28,34)/t26-/m1/s1" 
1XK InChIKey         InChI                1.03  SGTQLZKTLHEFII-AREMUKBSSA-N                                                                                                                                                                      
1XK SMILES_CANONICAL CACTVS               3.385 "Cn1cc(cn1)c2cc(F)cc(CNC(=O)c3cc(cc(C)n3)N4CC[C@@](CO)(C5CC5)C4=O)c2"                                                                                                                            
1XK SMILES           CACTVS               3.385 "Cn1cc(cn1)c2cc(F)cc(CNC(=O)c3cc(cc(C)n3)N4CC[C](CO)(C5CC5)C4=O)c2"                                                                                                                              
1XK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc(n1)C(=O)NCc2cc(cc(c2)F)c3cnn(c3)C)N4CC[C@@](C4=O)(CO)C5CC5"                                                                                                                            
1XK SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc(n1)C(=O)NCc2cc(cc(c2)F)c3cnn(c3)C)N4CCC(C4=O)(CO)C5CC5"                                                                                                                                
# 
_pdbx_chem_comp_identifier.comp_id           1XK 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "4-[(3~{S})-3-cyclopropyl-3-(hydroxymethyl)-2-oxidanylidene-pyrrolidin-1-yl]-~{N}-[[3-fluoranyl-5-(1-methylpyrazol-4-yl)phenyl]methyl]-6-methyl-pyridine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
1XK "Create component" 2021-07-08 PDBJ 
1XK "Initial release"  2022-09-07 RCSB 
# 
