data_Z9J
# 
_chem_comp.id                                    Z9J 
_chem_comp.name                                  "3-{[(3-{[(2-aminoethyl)sulfanyl]methyl}phenyl)methyl]sulfanyl}propanoic acid" 
_chem_comp.type                                  "PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C13 H19 N O2 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "3-[[3-(2-azanylethylsulfanylmethyl)phenyl]methylsulfanyl]propanoic acid" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-01-22 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        285.425 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Z9J 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Z9J N   N   N 0 1 N N N Y Y N -6.113 1.390  -1.858 7.552  -2.514 -0.115 N   Z9J 1  
Z9J CA  CA  C 0 1 N N N N Y N -5.580 0.184  -1.215 6.528  -1.702 0.555  CA  Z9J 2  
Z9J C2  C2  C 0 1 N N N N Y N -4.068 0.085  -1.310 5.493  -1.238 -0.472 C2  Z9J 3  
Z9J S1  S1  S 0 1 N N N N Y N -3.407 -1.485 -0.693 4.227  -0.236 0.356  S1  Z9J 4  
Z9J C3  C3  C 0 1 N N N N Y N -2.923 -1.062 1.010  3.110  0.213  -1.001 C3  Z9J 5  
Z9J C4  C4  C 0 1 Y N N N Y N -1.655 -0.248 1.076  1.985  1.061  -0.467 C4  Z9J 6  
Z9J C5  C5  C 0 1 Y N N N N N -1.700 1.121  1.305  2.116  2.436  -0.427 C5  Z9J 7  
Z9J C6  C6  C 0 1 Y N N N N N -0.528 1.863  1.364  1.084  3.215  0.064  C6  Z9J 8  
Z9J C7  C7  C 0 1 Y N N N N N 0.700  1.239  1.194  -0.078 2.618  0.514  C7  Z9J 9  
Z9J C8  C8  C 0 1 Y N N N Y N 0.768  -0.129 0.963  -0.209 1.242  0.474  C8  Z9J 10 
Z9J C9  C9  C 0 1 N N N N Y N 2.099  -0.813 0.777  -1.476 0.591  0.965  C9  Z9J 11 
Z9J S2  S2  S 0 1 N N N N Y N 2.572  -0.980 -0.972 -2.651 0.439  -0.409 S2  Z9J 12 
Z9J C10 C10 C 0 1 N N N N Y N 4.263  -1.623 -0.839 -4.086 -0.353 0.367  C10 Z9J 13 
Z9J C11 C11 C 0 1 N N N N Y N 5.287  -0.533 -0.563 -5.185 -0.554 -0.679 C11 Z9J 14 
Z9J C   C   C 0 1 N N N N Y Y 5.517  0.365  -1.747 -6.378 -1.211 -0.034 C   Z9J 15 
Z9J OXT OXT O 0 1 N Y N N Y Y 4.632  1.321  -1.868 -7.469 -1.487 -0.766 OXT Z9J 16 
Z9J O   O   O 0 1 N N N N Y Y 6.443  0.215  -2.522 -6.352 -1.491 1.141  O   Z9J 17 
Z9J C13 C13 C 0 1 Y N N N Y N -0.416 -0.861 0.907  0.821  0.464  -0.021 C13 Z9J 18 
Z9J H   H   H 0 1 N N N Y Y N -7.109 1.405  -1.766 8.248  -2.833 0.542  H   Z9J 19 
Z9J H2  H2  H 0 1 N Y N Y Y N -5.726 2.201  -1.419 7.135  -3.291 -0.605 H2  Z9J 20 
Z9J HA3 HA3 H 0 1 N N N N Y N -5.865 0.197  -0.153 6.035  -2.300 1.322  HA3 Z9J 21 
Z9J HA2 HA2 H 0 1 N N N N Y N -6.021 -0.698 -1.702 6.997  -0.834 1.016  HA2 Z9J 22 
Z9J H5  H5  H 0 1 N N N N Y N -3.777 0.195  -2.365 5.985  -0.641 -1.239 H5  Z9J 23 
Z9J H6  H6  H 0 1 N N N N Y N -3.628 0.904  -0.722 5.024  -2.107 -0.933 H6  Z9J 24 
Z9J H7  H7  H 0 1 N N N N Y N -3.736 -0.483 1.472  3.662  0.774  -1.755 H7  Z9J 25 
Z9J H8  H8  H 0 1 N N N N Y N -2.771 -1.994 1.573  2.701  -0.693 -1.450 H8  Z9J 26 
Z9J H9  H9  H 0 1 N N N N N N -2.653 1.612  1.438  3.024  2.903  -0.779 H9  Z9J 27 
Z9J H10 H10 H 0 1 N N N N N N -0.572 2.927  1.542  1.186  4.290  0.095  H10 Z9J 28 
Z9J H11 H11 H 0 1 N N N N N N 1.609  1.821  1.242  -0.884 3.226  0.898  H11 Z9J 29 
Z9J H12 H12 H 0 1 N N N N Y N 2.871  -0.225 1.295  -1.247 -0.400 1.358  H12 Z9J 30 
Z9J H13 H13 H 0 1 N N N N Y N 2.043  -1.817 1.223  -1.916 1.202  1.754  H13 Z9J 31 
Z9J H14 H14 H 0 1 N N N N Y N 4.298  -2.354 -0.018 -3.792 -1.319 0.775  H14 Z9J 32 
Z9J H15 H15 H 0 1 N N N N Y N 4.525  -2.121 -1.784 -4.461 0.282  1.171  H15 Z9J 33 
Z9J H16 H16 H 0 1 N N N N Y N 4.930  0.079  0.278  -5.480 0.413  -1.087 H16 Z9J 34 
Z9J H17 H17 H 0 1 N N N N Y N 6.241  -1.008 -0.292 -4.810 -1.188 -1.482 H17 Z9J 35 
Z9J HXT HXT H 0 1 N Y N N Y Y 4.836  1.847  -2.632 -8.209 -1.909 -0.308 HXT Z9J 36 
Z9J H19 H19 H 0 1 N N N N Y N -0.372 -1.925 0.729  0.717  -0.610 -0.056 H19 Z9J 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Z9J N   CA  SING N N 1  
Z9J CA  C2  SING N N 2  
Z9J C2  S1  SING N N 3  
Z9J S1  C3  SING N N 4  
Z9J C3  C4  SING N N 5  
Z9J C4  C5  DOUB Y N 6  
Z9J C5  C6  SING Y N 7  
Z9J C6  C7  DOUB Y N 8  
Z9J C7  C8  SING Y N 9  
Z9J C8  C9  SING N N 10 
Z9J C9  S2  SING N N 11 
Z9J S2  C10 SING N N 12 
Z9J C10 C11 SING N N 13 
Z9J C11 C   SING N N 14 
Z9J C   OXT SING N N 15 
Z9J C   O   DOUB N N 16 
Z9J C8  C13 DOUB Y N 17 
Z9J C4  C13 SING Y N 18 
Z9J N   H   SING N N 19 
Z9J N   H2  SING N N 20 
Z9J CA  HA3 SING N N 21 
Z9J CA  HA2 SING N N 22 
Z9J C2  H5  SING N N 23 
Z9J C2  H6  SING N N 24 
Z9J C3  H7  SING N N 25 
Z9J C3  H8  SING N N 26 
Z9J C5  H9  SING N N 27 
Z9J C6  H10 SING N N 28 
Z9J C7  H11 SING N N 29 
Z9J C9  H12 SING N N 30 
Z9J C9  H13 SING N N 31 
Z9J C10 H14 SING N N 32 
Z9J C10 H15 SING N N 33 
Z9J C11 H16 SING N N 34 
Z9J C11 H17 SING N N 35 
Z9J OXT HXT SING N N 36 
Z9J C13 H19 SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Z9J InChI            InChI                1.06  "InChI=1S/C13H19NO2S2/c14-5-7-18-10-12-3-1-2-11(8-12)9-17-6-4-13(15)16/h1-3,8H,4-7,9-10,14H2,(H,15,16)" 
Z9J InChIKey         InChI                1.06  HDBIDFYDMNICRF-UHFFFAOYSA-N                                                                             
Z9J SMILES_CANONICAL CACTVS               3.385 "NCCSCc1cccc(CSCCC(O)=O)c1"                                                                             
Z9J SMILES           CACTVS               3.385 "NCCSCc1cccc(CSCCC(O)=O)c1"                                                                             
Z9J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)CSCCN)CSCCC(=O)O"                                                                           
Z9J SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)CSCCN)CSCCC(=O)O"                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           Z9J 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "3-[[3-(2-azanylethylsulfanylmethyl)phenyl]methylsulfanyl]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Z9J "Create component"   2024-02-14 PDBE 
Z9J "Modify descriptor"  2024-02-14 PDBE 
Z9J "Other modification" 2024-02-14 PDBE 
Z9J "Initial release"    2024-04-24 RCSB 
Z9J "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      Z9J 
_pdbx_chem_comp_synonyms.name         "3-[[3-(2-azanylethylsulfanylmethyl)phenyl]methylsulfanyl]propanoic acid" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            Z9J 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain and backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
