data_Z6J
#

_chem_comp.id                                   Z6J
_chem_comp.name                                 alpha-L-ribofuranose
_chem_comp.type                                 "L-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C5 H10 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "alpha-L-ribose; L-ribose; ribose"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-12-19
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       150.130
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Z6J
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2VGD
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  Z6J  alpha-L-ribose  PDB  ?  
2  Z6J  L-ribose        PDB  ?  
3  Z6J  ribose          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Z6J  O5   O1   O  0  1  N  N  N  -3.205  -28.246   0.720   3.093   0.780  -0.477  O5   Z6J   1  
Z6J  C5   C1   C  0  1  N  N  N  -2.236  -28.901   1.551   2.307  -0.168   0.248  C5   Z6J   2  
Z6J  C4   C2   C  0  1  N  N  S  -1.309  -29.787   0.729   0.846  -0.063  -0.193  C4   Z6J   3  
Z6J  O4   O2   O  0  1  N  N  N  -0.647  -28.993  -0.260   0.297   1.206   0.199  O4   Z6J   4  
Z6J  C3   C3   C  0  1  N  N  R  -2.054  -30.904   0.006  -0.016  -1.120   0.542  C3   Z6J   5  
Z6J  O3   O3   O  0  1  N  N  N  -1.484  -32.164   0.372  -0.007  -2.367  -0.156  O3   Z6J   6  
Z6J  C2   C4   C  0  1  N  N  S  -1.859  -30.606  -1.473  -1.417  -0.454   0.481  C2   Z6J   7  
Z6J  O2   O4   O  0  1  N  N  N  -1.558  -31.776  -2.239  -2.061  -0.737  -0.763  O2   Z6J   8  
Z6J  C1   C5   C  0  1  N  N  R  -0.689  -29.638  -1.535  -1.071   1.046   0.591  C1   Z6J   9  
Z6J  O1   O5   O  0  1  N  Y  N   0.607  -29.926  -1.728  -1.916   1.804  -0.277  O1   Z6J  10  
Z6J  H51  H11  H  0  1  N  N  N  -1.636  -28.139   2.070   2.675  -1.174   0.048  H51  Z6J  11  
Z6J  H52  H12  H  0  1  N  N  N  -2.761  -29.522   2.292   2.380   0.040   1.316  H52  Z6J  12  
Z6J  H4   H21  H  0  1  N  N  N  -0.567  -30.240   1.403   0.766  -0.192  -1.272  H4   Z6J  13  
Z6J  H3   H31  H  0  1  N  N  N  -3.124  -30.863   0.258   0.315  -1.248   1.573  H3   Z6J  14  
Z6J  HO3  H3O  H  0  1  N  Y  N  -1.945  -32.863  -0.076  -0.533  -3.059   0.268  HO3  Z6J  15  
Z6J  H2   H41  H  0  1  N  N  N  -2.760  -30.111  -1.864  -2.036  -0.775   1.318  H2   Z6J  16  
Z6J  HO2  H4O  H  0  1  N  Y  N  -1.446  -31.537  -3.152  -2.939  -0.343  -0.850  HO2  Z6J  17  
Z6J  H1   H51  H  0  1  N  N  N  -0.977  -28.870  -2.269  -1.202   1.381   1.621  H1   Z6J  18  
Z6J  HO1  HOT  H  0  1  N  Y  N   0.713  -30.368  -2.562  -1.746   2.756  -0.260  HO1  Z6J  19  
Z6J  HO5  H1O  H  0  1  N  Y  N  -3.768  -27.702   1.258   4.032   0.770  -0.248  HO5  Z6J  20  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Z6J  O5  C5   SING  N  N   1  
Z6J  C5  C4   SING  N  N   2  
Z6J  C4  O4   SING  N  N   3  
Z6J  C4  C3   SING  N  N   4  
Z6J  O4  C1   SING  N  N   5  
Z6J  C3  O3   SING  N  N   6  
Z6J  C3  C2   SING  N  N   7  
Z6J  C2  O2   SING  N  N   8  
Z6J  C2  C1   SING  N  N   9  
Z6J  C1  O1   SING  N  N  10  
Z6J  C5  H51  SING  N  N  11  
Z6J  C5  H52  SING  N  N  12  
Z6J  C4  H4   SING  N  N  13  
Z6J  C3  H3   SING  N  N  14  
Z6J  C1  H1   SING  N  N  15  
Z6J  O3  HO3  SING  N  N  16  
Z6J  C2  H2   SING  N  N  17  
Z6J  O2  HO2  SING  N  N  18  
Z6J  O1  HO1  SING  N  N  19  
Z6J  O5  HO5  SING  N  N  20  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Z6J  SMILES            ACDLabs               12.01  "OC1C(OC(O)C1O)CO"  
Z6J  InChI             InChI                 1.03   "InChI=1S/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3-,4-,5+/m0/s1"  
Z6J  InChIKey          InChI                 1.03   HMFHBZSHGGEWLO-NEEWWZBLSA-N  
Z6J  SMILES_CANONICAL  CACTVS                3.370  "OC[C@@H]1O[C@@H](O)[C@@H](O)[C@H]1O"  
Z6J  SMILES            CACTVS                3.370  "OC[CH]1O[CH](O)[CH](O)[CH]1O"  
Z6J  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C([C@H]1[C@@H]([C@@H]([C@@H](O1)O)O)O)O"  
Z6J  SMILES            "OpenEye OEToolkits"  1.7.6  "C(C1C(C(C(O1)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Z6J  "SYSTEMATIC NAME"                      ACDLabs               12.01  alpha-L-ribofuranose  
Z6J  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  1.7.6  "(2R,3S,4R,5S)-5-(hydroxymethyl)oxolane-2,3,4-triol"  
Z6J  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    LRibfa  
Z6J  "COMMON NAME"                          GMML                  1.0    a-L-ribofuranose  
Z6J  "IUPAC CARBOHYDRATE SYMBOL"            PDB-CARE              1.0    a-L-Ribf  
Z6J  "SNFG CARBOHYDRATE SYMBOL"             GMML                  1.0    Rib  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
Z6J  "CARBOHYDRATE ISOMER"                  L         PDB  ?  
Z6J  "CARBOHYDRATE RING"                    furanose  PDB  ?  
Z6J  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
Z6J  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Z6J  "Create component"          2012-12-19  RCSB  
Z6J  "Initial release"           2014-05-28  RCSB  
Z6J  "Other modification"        2019-08-12  RCSB  
Z6J  "Other modification"        2019-12-19  RCSB  
Z6J  "Other modification"        2020-07-03  RCSB  
Z6J  "Modify synonyms"           2020-07-17  RCSB  
Z6J  "Modify atom id"            2020-07-17  RCSB  
Z6J  "Modify component atom id"  2020-07-17  RCSB  
##
