data_YMJ
# 
_chem_comp.id                                    YMJ 
_chem_comp.name                                  "(1R,2S)-1-hydroxy-2-((S)-4-methyl-2-(((((1s,4S)-4-propylcyclohexyl)oxy)carbonyl)amino)pentanamido)-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H41 N3 O8 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-03-12 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        519.652 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YMJ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7LZY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YMJ C21 C1  C 0 1 N N N N N N 9.523  16.575 23.297 10.981 -0.610 -0.585 C21 YMJ 1  
YMJ C14 C2  C 0 1 N N R N N N 7.976  2.280  19.564 -3.978 -1.923 -0.830 C14 YMJ 2  
YMJ C13 C3  C 0 1 N N N N N N 6.147  6.252  20.261 -5.698 1.961  0.381  C13 YMJ 3  
YMJ C12 C4  C 0 1 N N N N N N 5.520  7.594  19.929 -6.087 3.445  0.204  C12 YMJ 4  
YMJ C16 C5  C 0 1 N N N N N N 11.272 10.815 23.272 4.978  1.203  0.089  C16 YMJ 5  
YMJ C15 C6  C 0 1 N N N N N N 10.336 9.887  22.536 4.369  -0.127 -0.360 C15 YMJ 6  
YMJ C11 C7  C 0 1 N N N N N N 6.817  6.993  18.094 -4.474 3.016  -1.412 C11 YMJ 7  
YMJ C18 C8  C 0 1 N N N N N N 9.594  12.693 23.078 7.256  0.357  -0.495 C18 YMJ 8  
YMJ C19 C9  C 0 1 N N N N N N 9.357  14.144 22.671 8.672  0.118  0.031  C19 YMJ 9  
YMJ C1  C10 C 0 1 N N N N N N 10.484 7.528  22.150 2.020  0.024  0.034  C1  YMJ 10 
YMJ C10 C11 C 0 1 N N S N N N 7.254  6.086  19.227 -4.374 1.884  -0.414 C10 YMJ 11 
YMJ C17 C12 C 0 1 N N N N N N 11.040 12.267 22.854 6.395  0.964  0.615  C17 YMJ 12 
YMJ C2  C13 C 0 1 N N S N N N 10.780 5.117  22.106 -0.345 0.143  0.607  C2  YMJ 13 
YMJ C20 C14 C 0 1 N N N N N N 10.072 15.185 23.515 9.565  -0.371 -1.111 C20 YMJ 14 
YMJ C22 C15 C 0 1 N N N N N N 8.654  11.736 22.354 6.647  -0.973 -0.944 C22 YMJ 15 
YMJ C23 C16 C 0 1 N N N N N N 8.893  10.281 22.757 5.230  -0.733 -1.470 C23 YMJ 16 
YMJ C3  C17 C 0 1 N N N N N N 11.443 4.077  23.002 -0.506 1.493  1.309  C3  YMJ 17 
YMJ C4  C18 C 0 1 N N N N N N 12.951 4.262  23.165 0.747  1.792  2.134  C4  YMJ 18 
YMJ C5  C19 C 0 1 N N N N N N 13.685 3.848  21.898 0.639  3.195  2.735  C5  YMJ 19 
YMJ C6  C20 C 0 1 N N N N N N 13.472 3.480  24.356 0.874  0.763  3.260  C6  YMJ 20 
YMJ C7  C21 C 0 1 N N N N N N 9.368  4.700  21.712 -1.625 -0.209 -0.106 C7  YMJ 21 
YMJ C8  C22 C 0 1 N N S N N N 7.927  3.745  19.957 -4.035 -0.572 -0.112 C8  YMJ 22 
YMJ C9  C23 C 0 1 N N N N N N 7.539  4.649  18.790 -4.260 0.541  -1.137 C9  YMJ 23 
YMJ N1  N1  N 0 1 N N N N N N 10.793 6.400  22.777 0.748  0.225  -0.364 N1  YMJ 24 
YMJ N2  N2  N 0 1 N N N N N N 9.222  4.161  20.499 -2.771 -0.340 0.592  N2  YMJ 25 
YMJ N3  N3  N 0 1 N N N N N N 5.772  7.706  18.497 -5.445 3.872  -1.045 N3  YMJ 26 
YMJ O1  O1  O 0 1 N N N N N N 10.239 7.653  20.965 2.260  -0.225 1.199  O1  YMJ 27 
YMJ O2  O2  O 0 1 N N N N N N 7.365  7.074  16.987 -3.781 3.135  -2.400 O2  YMJ 28 
YMJ O3  O3  O 0 1 N N N N N N 8.365  1.464  20.647 -5.235 -2.181 -1.458 O3  YMJ 29 
YMJ O4  O4  O 0 1 N N N N N N 8.429  4.882  22.481 -1.624 -0.375 -1.307 O4  YMJ 30 
YMJ O5  O5  O 0 1 N N N N N N 10.513 8.532  23.051 3.025  0.100  -0.859 O5  YMJ 31 
YMJ H1  H1  H 0 1 N N N N N N 10.072 17.290 23.928 11.382 0.320  -0.184 H1  YMJ 32 
YMJ H2  H2  H 0 1 N N N N N N 9.641  16.854 22.240 10.954 -1.364 0.203  H2  YMJ 33 
YMJ H3  H3  H 0 1 N N N N N N 8.456  16.594 23.564 11.617 -0.959 -1.399 H3  YMJ 34 
YMJ S1  S1  S 0 1 N Y N N N N 8.652  2.145  18.746 -3.623 -3.233 0.374  S1  YMJ 35 
YMJ H5  H5  H 0 1 N N N N N N 6.942  2.004  19.309 -3.192 -1.900 -1.584 H5  YMJ 36 
YMJ H6  H6  H 0 1 N N N N N N 5.406  5.443  20.172 -5.536 1.723  1.432  H6  YMJ 37 
YMJ H7  H7  H 0 1 N N N N N N 6.563  6.258  21.279 -6.452 1.305  -0.054 H7  YMJ 38 
YMJ H8  H8  H 0 1 N N N N N N 6.006  8.410  20.484 -7.170 3.544  0.124  H8  YMJ 39 
YMJ H9  H9  H 0 1 N N N N N N 4.441  7.595  20.145 -5.716 4.035  1.042  H9  YMJ 40 
YMJ H10 H10 H 0 1 N N N N N N 11.097 10.719 24.354 5.016  1.889  -0.757 H10 YMJ 41 
YMJ H11 H11 H 0 1 N N N N N N 12.311 10.536 23.042 4.365  1.635  0.880  H11 YMJ 42 
YMJ H12 H12 H 0 1 N N N N N N 10.562 9.916  21.460 4.332  -0.813 0.486  H12 YMJ 43 
YMJ H13 H13 H 0 1 N N N N N N 9.386  12.612 24.155 7.294  1.043  -1.341 H13 YMJ 44 
YMJ H14 H14 H 0 1 N N N N N N 9.692  14.263 21.630 9.073  1.049  0.433  H14 YMJ 45 
YMJ H15 H15 H 0 1 N N N N N N 8.277  14.341 22.733 8.645  -0.635 0.819  H15 YMJ 46 
YMJ H16 H16 H 0 1 N N N N N N 8.180  6.498  19.654 -3.522 2.035  0.249  H16 YMJ 47 
YMJ H17 H17 H 0 1 N N N N N N 11.282 12.374 21.786 6.829  1.911  0.935  H17 YMJ 48 
YMJ H18 H18 H 0 1 N N N N N N 11.700 12.918 23.446 6.357  0.277  1.461  H18 YMJ 49 
YMJ H19 H19 H 0 1 N N N N N N 11.376 5.195  21.185 -0.117 -0.626 1.346  H19 YMJ 50 
YMJ H20 H20 H 0 1 N N N N N N 9.955  14.921 24.576 9.592  0.382  -1.899 H20 YMJ 51 
YMJ H21 H21 H 0 1 N N N N N N 11.140 15.181 23.252 9.164  -1.302 -1.513 H21 YMJ 52 
YMJ H22 H22 H 0 1 N N N N N N 8.813  11.835 21.270 7.260  -1.405 -1.735 H22 YMJ 53 
YMJ H23 H23 H 0 1 N N N N N N 7.616  12.006 22.598 6.609  -1.659 -0.098 H23 YMJ 54 
YMJ H24 H24 H 0 1 N N N N N N 8.645  10.157 23.822 4.796  -1.681 -1.790 H24 YMJ 55 
YMJ H25 H25 H 0 1 N N N N N N 8.246  9.629  22.152 5.268  -0.047 -2.316 H25 YMJ 56 
YMJ H26 H26 H 0 1 N N N N N N 10.979 4.133  23.998 -0.646 2.275  0.563  H26 YMJ 57 
YMJ H27 H27 H 0 1 N N N N N N 11.262 3.082  22.569 -1.375 1.459  1.967  H27 YMJ 58 
YMJ H28 H28 H 0 1 N N N N N N 13.147 5.330  23.342 1.626  1.738  1.492  H28 YMJ 59 
YMJ H29 H29 H 0 1 N N N N N N 14.767 3.989  22.038 -0.240 3.248  3.377  H29 YMJ 60 
YMJ H30 H30 H 0 1 N N N N N N 13.478 2.789  21.684 1.532  3.408  3.323  H30 YMJ 61 
YMJ H31 H31 H 0 1 N N N N N N 13.340 4.466  21.056 0.549  3.927  1.933  H31 YMJ 62 
YMJ H32 H32 H 0 1 N N N N N N 12.933 3.790  25.263 0.951  -0.236 2.832  H32 YMJ 63 
YMJ H33 H33 H 0 1 N N N N N N 13.315 2.405  24.186 1.767  0.976  3.848  H33 YMJ 64 
YMJ H34 H34 H 0 1 N N N N N N 14.547 3.678  24.483 -0.005 0.817  3.902  H34 YMJ 65 
YMJ H35 H35 H 0 1 N N N N N N 7.164  3.860  20.741 -4.855 -0.577 0.606  H35 YMJ 66 
YMJ H36 H36 H 0 1 N N N N N N 6.636  4.240  18.313 -5.179 0.346  -1.689 H36 YMJ 67 
YMJ H37 H37 H 0 1 N N N N N N 8.365  4.659  18.063 -3.419 0.572  -1.830 H37 YMJ 68 
YMJ H38 H38 H 0 1 N N N N N N 11.043 6.437  23.745 0.557  0.424  -1.294 H38 YMJ 69 
YMJ H39 H39 H 0 1 N N N N N N 10.037 4.035  19.933 -2.759 -0.280 1.560  H39 YMJ 70 
YMJ H40 H40 H 0 1 N N N N N N 5.215  8.263  17.881 -5.689 4.669  -1.541 H40 YMJ 71 
YMJ H41 H41 H 0 1 N N N N N N 8.386  0.556  20.368 -5.489 -1.519 -2.115 H41 YMJ 72 
YMJ O7  O7  O 0 1 N Y N N N N ?      ?      ?      -4.491 -3.129 1.494  O7  YMJ 73 
YMJ O6  O6  O 0 1 N Y N N N N ?      ?      ?      -3.423 -4.475 -0.286 O6  YMJ 74 
YMJ O8  O8  O 0 1 N Y N N N N ?      ?      ?      -2.251 -2.877 0.928  O8  YMJ 75 
YMJ H4  H4  H 0 1 N Y N N N N ?      ?      ?      -1.923 -3.498 1.594  H4  YMJ 76 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YMJ O2  C11 DOUB N N 1  
YMJ C11 N3  SING N N 2  
YMJ C11 C10 SING N N 3  
YMJ N3  C12 SING N N 4  
YMJ C9  C10 SING N N 5  
YMJ C9  C8  SING N N 6  
YMJ C10 C13 SING N N 7  
YMJ C14 C8  SING N N 8  
YMJ C14 O3  SING N N 9  
YMJ C12 C13 SING N N 10 
YMJ C8  N2  SING N N 11 
YMJ N2  C7  SING N N 12 
YMJ O1  C1  DOUB N N 13 
YMJ C7  C2  SING N N 14 
YMJ C7  O4  DOUB N N 15 
YMJ C5  C4  SING N N 16 
YMJ C2  N1  SING N N 17 
YMJ C2  C3  SING N N 18 
YMJ C1  N1  SING N N 19 
YMJ C1  O5  SING N N 20 
YMJ C22 C23 SING N N 21 
YMJ C22 C18 SING N N 22 
YMJ C15 C23 SING N N 23 
YMJ C15 O5  SING N N 24 
YMJ C15 C16 SING N N 25 
YMJ C19 C18 SING N N 26 
YMJ C19 C20 SING N N 27 
YMJ C17 C18 SING N N 28 
YMJ C17 C16 SING N N 29 
YMJ C3  C4  SING N N 30 
YMJ C4  C6  SING N N 31 
YMJ C21 C20 SING N N 32 
YMJ C21 H1  SING N N 33 
YMJ C21 H2  SING N N 34 
YMJ C21 H3  SING N N 35 
YMJ C14 S1  SING N N 36 
YMJ C14 H5  SING N N 37 
YMJ C13 H6  SING N N 38 
YMJ C13 H7  SING N N 39 
YMJ C12 H8  SING N N 40 
YMJ C12 H9  SING N N 41 
YMJ C16 H10 SING N N 42 
YMJ C16 H11 SING N N 43 
YMJ C15 H12 SING N N 44 
YMJ C18 H13 SING N N 45 
YMJ C19 H14 SING N N 46 
YMJ C19 H15 SING N N 47 
YMJ C10 H16 SING N N 48 
YMJ C17 H17 SING N N 49 
YMJ C17 H18 SING N N 50 
YMJ C2  H19 SING N N 51 
YMJ C20 H20 SING N N 52 
YMJ C20 H21 SING N N 53 
YMJ C22 H22 SING N N 54 
YMJ C22 H23 SING N N 55 
YMJ C23 H24 SING N N 56 
YMJ C23 H25 SING N N 57 
YMJ C3  H26 SING N N 58 
YMJ C3  H27 SING N N 59 
YMJ C4  H28 SING N N 60 
YMJ C5  H29 SING N N 61 
YMJ C5  H30 SING N N 62 
YMJ C5  H31 SING N N 63 
YMJ C6  H32 SING N N 64 
YMJ C6  H33 SING N N 65 
YMJ C6  H34 SING N N 66 
YMJ C8  H35 SING N N 67 
YMJ C9  H36 SING N N 68 
YMJ C9  H37 SING N N 69 
YMJ N1  H38 SING N N 70 
YMJ N2  H39 SING N N 71 
YMJ N3  H40 SING N N 72 
YMJ O3  H41 SING N N 73 
YMJ S1  O7  DOUB N N 74 
YMJ S1  O6  DOUB N N 75 
YMJ S1  O8  SING N N 76 
YMJ O8  H4  SING N N 77 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YMJ SMILES           ACDLabs              12.01 "CC(C)CC(NC(=O)OC1CCC(CCC)CC1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O"                                                                                                                                                                
YMJ InChI            InChI                1.03  "InChI=1S/C23H41N3O8S/c1-4-5-15-6-8-17(9-7-15)34-23(30)26-18(12-14(2)3)21(28)25-19(22(29)35(31,32)33)13-16-10-11-24-20(16)27/h14-19,22,29H,4-13H2,1-3H3,(H,24,27)(H,25,28)(H,26,30)(H,31,32,33)/t15-,16-,17-,18-,19-,22+/m0/s1" 
YMJ InChIKey         InChI                1.03  VCQYBHSDNWQLAS-ZXLNZJBRSA-N                                                                                                                                                                                                     
YMJ SMILES_CANONICAL CACTVS               3.385 "CCC[C@@H]1CC[C@H](CC1)OC(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@H](O)[S](O)(=O)=O"                                                                                                                                  
YMJ SMILES           CACTVS               3.385 "CCC[CH]1CC[CH](CC1)OC(=O)N[CH](CC(C)C)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O"                                                                                                                                            
YMJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCC1CCC(CC1)OC(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]2CCNC2=O)C(O)S(=O)(=O)O"                                                                                                                                                 
YMJ SMILES           "OpenEye OEToolkits" 2.0.7 "CCCC1CCC(CC1)OC(=O)NC(CC(C)C)C(=O)NC(CC2CCNC2=O)C(O)S(=O)(=O)O"                                                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YMJ "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]-2-{[N-({[(1s,4S)-4-propylcyclohexyl]oxy}carbonyl)-L-leucyl]amino}propane-1-sulfonic acid"                           
YMJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-4-methyl-2-[(4-propylcyclohexyl)oxycarbonylamino]pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YMJ "Create component" 2021-03-12 RCSB 
YMJ "Initial release"  2021-03-24 RCSB 
YMJ "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            YMJ 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C14 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
