data_YLJ
# 
_chem_comp.id                                    YLJ 
_chem_comp.name                                  "(1S,2S)-2-((S)-2-((((3-fluorobenzyl)oxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H30 F N3 O8 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-03-12 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        503.542 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YLJ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7M03 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YLJ C11 C1  C 0 1 N N S N N N 8.945  19.789 27.756 3.250  -0.023 -1.457 C11 YLJ 1  
YLJ C16 C2  C 0 1 N N N N N N 5.625  22.640 26.202 5.446  3.158  0.865  C16 YLJ 2  
YLJ C17 C3  C 0 1 N N N N N N 7.007  22.190 26.768 5.521  3.016  -0.671 C17 YLJ 3  
YLJ O18 O1  O 0 1 N N N N N N 6.704  20.402 23.704 2.113  2.364  0.195  O18 YLJ 4  
YLJ C23 C4  C 0 1 N N N N N N 11.447 25.957 24.568 -4.851 0.933  0.581  C23 YLJ 5  
YLJ C24 C5  C 0 1 Y N N N N N 11.462 27.536 24.527 -6.133 0.668  -0.165 C24 YLJ 6  
YLJ C29 C6  C 0 1 Y N N N N N 10.485 29.685 23.768 -7.748 1.320  -1.809 C29 YLJ 7  
YLJ C28 C7  C 0 1 Y N N N N N 11.485 30.400 24.449 -8.488 0.185  -1.535 C28 YLJ 8  
YLJ C26 C8  C 0 1 Y N N N N N 12.473 29.681 25.166 -8.053 -0.707 -0.569 C26 YLJ 9  
YLJ C25 C9  C 0 1 Y N N N N N 12.442 28.258 25.195 -6.874 -0.464 0.116  C25 YLJ 10 
YLJ C02 C10 C 0 1 N N N N N N 10.814 23.948 25.854 -2.516 0.470  0.404  C02 YLJ 11 
YLJ C04 C11 C 0 1 N N S N N N 12.184 22.156 27.025 -0.109 0.089  0.376  C04 YLJ 12 
YLJ C05 C12 C 0 1 N N N N N N 13.241 21.929 28.114 0.122  -1.004 1.421  C05 YLJ 13 
YLJ C06 C13 C 0 1 N N N N N N 14.695 22.306 27.741 -0.855 -0.813 2.583  C06 YLJ 14 
YLJ C07 C14 C 0 1 N N N N N N 15.722 22.120 28.913 -0.709 -1.975 3.568  C07 YLJ 15 
YLJ C08 C15 C 0 1 N N N N N N 15.113 21.543 26.474 -0.545 0.503  3.299  C08 YLJ 16 
YLJ C09 C16 C 0 1 N N N N N N 10.820 21.569 27.559 0.931  -0.025 -0.709 C09 YLJ 17 
YLJ C12 C17 C 0 1 N N N N N N 7.781  19.786 26.661 4.515  0.725  -1.030 C12 YLJ 18 
YLJ C13 C18 C 0 1 N N S N N N 7.568  21.098 25.844 4.227  2.227  -0.978 C13 YLJ 19 
YLJ C14 C19 C 0 1 N N N N N N 6.557  21.075 24.658 3.311  2.550  0.183  C14 YLJ 20 
YLJ C19 C20 C 0 1 N N S N N N 9.220  18.372 28.306 3.583  -1.497 -1.691 C19 YLJ 21 
YLJ C30 C21 C 0 1 Y N N N N N 10.486 28.280 23.814 -6.571 1.561  -1.125 C30 YLJ 22 
YLJ F27 F1  F 0 1 N N N N N N 13.404 30.326 25.801 -8.775 -1.816 -0.300 F27 YLJ 23 
YLJ N03 N1  N 0 1 N N N N N N 11.967 23.564 26.625 -1.444 -0.069 -0.209 N03 YLJ 24 
YLJ N10 N2  N 0 1 N N N N N N 10.239 20.348 27.229 2.239  0.088  -0.403 N10 YLJ 25 
YLJ N15 N3  N 0 1 N N N N N N 5.470  21.985 24.905 4.019  3.074  1.198  N15 YLJ 26 
YLJ O01 O2  O 0 1 N N N N N N 10.044 23.157 25.436 -2.376 1.087  1.441  O01 YLJ 27 
YLJ O20 O3  O 0 1 N N N N N N 7.999  17.756 28.634 4.569  -1.605 -2.720 O20 YLJ 28 
YLJ O21 O4  O 0 1 N N N N N N 10.221 22.327 28.341 0.591  -0.219 -1.857 O21 YLJ 29 
YLJ O22 O5  O 0 1 N N N N N N 10.616 25.336 25.579 -3.742 0.325  -0.134 O22 YLJ 30 
YLJ H1  H1  H 0 1 N N N N N N 8.608  20.419 28.592 2.864  0.413  -2.378 H1  YLJ 31 
YLJ H2  H2  H 0 1 N N N N N N 5.603  23.733 26.080 5.994  2.347  1.346  H2  YLJ 32 
YLJ H3  H3  H 0 1 N N N N N N 6.881  21.790 27.785 5.505  3.993  -1.154 H3  YLJ 33 
YLJ H4  H4  H 0 1 N N N N N N 7.696  23.047 26.794 6.403  2.449  -0.968 H4  YLJ 34 
YLJ H5  H5  H 0 1 N N N N N N 11.098 25.602 23.587 -4.689 2.008  0.656  H5  YLJ 35 
YLJ H6  H6  H 0 1 N N N N N N 12.481 25.619 24.734 -4.917 0.504  1.581  H6  YLJ 36 
YLJ H7  H7  H 0 1 N N N N N N 9.722  30.211 23.214 -8.089 2.019  -2.559 H7  YLJ 37 
YLJ H8  H8  H 0 1 N N N N N N 11.500 31.480 24.426 -9.407 -0.003 -2.069 H8  YLJ 38 
YLJ H9  H9  H 0 1 N N N N N N 13.200 27.726 25.751 -6.534 -1.160 0.869  H9  YLJ 39 
YLJ H10 H10 H 0 1 N N N N N N 12.474 21.574 26.138 -0.034 1.067  0.850  H10 YLJ 40 
YLJ H11 H11 H 0 1 N N N N N N 12.953 22.527 28.991 -0.041 -1.982 0.967  H11 YLJ 41 
YLJ H12 H12 H 0 1 N N N N N N 13.228 20.861 28.378 1.145  -0.942 1.792  H12 YLJ 42 
YLJ H13 H13 H 0 1 N N N N N N 14.694 23.377 27.488 -1.875 -0.787 2.200  H13 YLJ 43 
YLJ H14 H14 H 0 1 N N N N N N 15.380 22.683 29.794 0.311  -2.001 3.951  H14 YLJ 44 
YLJ H15 H15 H 0 1 N N N N N N 15.799 21.053 29.167 -1.405 -1.839 4.396  H15 YLJ 45 
YLJ H16 H16 H 0 1 N N N N N N 16.708 22.494 28.599 -0.930 -2.913 3.058  H16 YLJ 46 
YLJ H17 H17 H 0 1 N N N N N N 16.146 21.811 26.208 0.475  0.477  3.682  H17 YLJ 47 
YLJ H18 H18 H 0 1 N N N N N N 15.051 20.461 26.661 -0.648 1.331  2.597  H18 YLJ 48 
YLJ H19 H19 H 0 1 N N N N N N 14.441 21.811 25.646 -1.240 0.640  4.127  H19 YLJ 49 
YLJ H20 H20 H 0 1 N N N N N N 6.838  19.563 27.181 4.826  0.380  -0.044 H20 YLJ 50 
YLJ H21 H21 H 0 1 N N N N N N 8.003  18.982 25.944 5.311  0.533  -1.750 H21 YLJ 51 
YLJ H22 H22 H 0 1 N N N N N N 8.544  21.429 25.461 3.788  2.563  -1.917 H22 YLJ 52 
YLJ H23 H23 H 0 1 N N N N N N 9.797  18.504 29.233 2.682  -2.030 -1.993 H23 YLJ 53 
YLJ S1  S1  S 0 1 N Y N N N N 9.719  17.792 27.558 4.228  -2.222 -0.158 S1  YLJ 54 
YLJ H25 H25 H 0 1 N N N N N N 9.712  27.744 23.285 -5.994 2.448  -1.341 H25 YLJ 55 
YLJ H26 H26 H 0 1 N N N N N N 12.632 24.260 26.895 -1.555 -0.562 -1.037 H26 YLJ 56 
YLJ H27 H27 H 0 1 N N N N N N 10.735 19.781 26.571 2.510  0.243  0.516  H27 YLJ 57 
YLJ H28 H28 H 0 1 N N N N N N 8.165  16.884 28.973 4.292  -1.237 -3.570 H28 YLJ 58 
YLJ O1  O6  O 0 1 N Y N N N N ?      ?      ?      4.235  -3.640 -0.241 O1  YLJ 59 
YLJ O2  O7  O 0 1 N Y N N N N ?      ?      ?      5.374  -1.509 0.288  O2  YLJ 60 
YLJ O3  O8  O 0 1 N Y N N N N ?      ?      ?      3.164  -1.912 0.886  O3  YLJ 61 
YLJ H24 H24 H 0 1 N N N N N N 4.818  22.331 26.882 5.851  4.121  1.175  H24 YLJ 62 
YLJ H29 H29 H 0 1 N N N N N N 4.711  22.147 24.274 3.636  3.361  2.042  H29 YLJ 63 
YLJ H30 H30 H 0 1 N Y N N N N ?      ?      ?      3.372  -2.243 1.770  H30 YLJ 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YLJ O18 C14 DOUB N N 1  
YLJ C29 C30 DOUB Y N 2  
YLJ C29 C28 SING Y N 3  
YLJ C30 C24 SING Y N 4  
YLJ C28 C26 DOUB Y N 5  
YLJ C24 C23 SING N N 6  
YLJ C24 C25 DOUB Y N 7  
YLJ C23 O22 SING N N 8  
YLJ C14 N15 SING N N 9  
YLJ C14 C13 SING N N 10 
YLJ N15 C16 SING N N 11 
YLJ C26 C25 SING Y N 12 
YLJ C26 F27 SING N N 13 
YLJ O01 C02 DOUB N N 14 
YLJ O22 C02 SING N N 15 
YLJ C13 C12 SING N N 16 
YLJ C13 C17 SING N N 17 
YLJ C02 N03 SING N N 18 
YLJ C16 C17 SING N N 19 
YLJ C08 C06 SING N N 20 
YLJ N03 C04 SING N N 21 
YLJ C12 C11 SING N N 22 
YLJ C04 C09 SING N N 23 
YLJ C04 C05 SING N N 24 
YLJ N10 C09 SING N N 25 
YLJ N10 C11 SING N N 26 
YLJ C09 O21 DOUB N N 27 
YLJ C06 C05 SING N N 28 
YLJ C06 C07 SING N N 29 
YLJ C11 C19 SING N N 30 
YLJ C19 O20 SING N N 31 
YLJ C11 H1  SING N N 32 
YLJ C16 H2  SING N N 33 
YLJ C17 H3  SING N N 34 
YLJ C17 H4  SING N N 35 
YLJ C23 H5  SING N N 36 
YLJ C23 H6  SING N N 37 
YLJ C29 H7  SING N N 38 
YLJ C28 H8  SING N N 39 
YLJ C25 H9  SING N N 40 
YLJ C04 H10 SING N N 41 
YLJ C05 H11 SING N N 42 
YLJ C05 H12 SING N N 43 
YLJ C06 H13 SING N N 44 
YLJ C07 H14 SING N N 45 
YLJ C07 H15 SING N N 46 
YLJ C07 H16 SING N N 47 
YLJ C08 H17 SING N N 48 
YLJ C08 H18 SING N N 49 
YLJ C08 H19 SING N N 50 
YLJ C12 H20 SING N N 51 
YLJ C12 H21 SING N N 52 
YLJ C13 H22 SING N N 53 
YLJ C19 H23 SING N N 54 
YLJ C19 S1  SING N N 55 
YLJ C30 H25 SING N N 56 
YLJ N03 H26 SING N N 57 
YLJ N10 H27 SING N N 58 
YLJ O20 H28 SING N N 59 
YLJ S1  O1  DOUB N N 60 
YLJ S1  O2  DOUB N N 61 
YLJ S1  O3  SING N N 62 
YLJ C16 H24 SING N N 63 
YLJ N15 H29 SING N N 64 
YLJ O3  H30 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YLJ SMILES           ACDLabs              12.01 "CC(C)CC(NC(=O)OCc1cccc(F)c1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O"                                                                                                                                                                        
YLJ InChI            InChI                1.03  "InChI=1S/C21H30FN3O8S/c1-12(2)8-16(25-21(29)33-11-13-4-3-5-15(22)9-13)19(27)24-17(20(28)34(30,31)32)10-14-6-7-23-18(14)26/h3-5,9,12,14,16-17,20,28H,6-8,10-11H2,1-2H3,(H,23,26)(H,24,27)(H,25,29)(H,30,31,32)/t14-,16-,17-,20-/m0/s1" 
YLJ InChIKey         InChI                1.03  LNGFVEUFXDACOC-VERUCKTNSA-N                                                                                                                                                                                                            
YLJ SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)OCc1cccc(F)c1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@@H](O)[S](O)(=O)=O"                                                                                                                                                   
YLJ SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)OCc1cccc(F)c1)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O"                                                                                                                                                          
YLJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2cccc(c2)F"                                                                                                                                                         
YLJ SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2cccc(c2)F"                                                                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YLJ "SYSTEMATIC NAME" ACDLabs              12.01 "(1S,2S)-2-[(N-{[(3-fluorophenyl)methoxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"                                    
YLJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-2-[(3-fluorophenyl)methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YLJ "Create component" 2021-03-12 RCSB 
YLJ "Initial release"  2021-03-24 RCSB 
YLJ "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            YLJ 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C19 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
