data_Y3J
# 
_chem_comp.id                                    Y3J 
_chem_comp.name                                  "5,5-DIFLUOROMETHYL ADENOSINE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H11 F2 N5 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-10-05 
_chem_comp.pdbx_modified_date                    2015-12-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        287.223 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y3J 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5FIU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y3J N1   N1   N 0 1 Y N N 14.311 31.032 -33.742 -4.659 -0.695 0.358  N1   Y3J 1  
Y3J C2   C2   C 0 1 Y N N 13.741 30.217 -32.763 -3.764 -1.574 0.771  C2   Y3J 2  
Y3J N3   N3   N 0 1 Y N N 14.308 30.179 -31.517 -2.470 -1.334 0.734  N3   Y3J 3  
Y3J C4   C4   C 0 1 Y N N 15.405 30.944 -31.283 -2.008 -0.178 0.271  C4   Y3J 4  
Y3J C5   C5   C 0 1 Y N N 15.950 31.725 -32.234 -2.921 0.791  -0.181 C5   Y3J 5  
Y3J C6   C6   C 0 1 Y N N 15.408 31.751 -33.476 -4.292 0.489  -0.121 C6   Y3J 6  
Y3J N6   N6   N 0 1 N N N 15.947 32.539 -34.409 -5.237 1.403  -0.552 N6   Y3J 7  
Y3J N7   N7   N 0 1 Y N N 16.988 32.343 -31.686 -2.198 1.859  -0.593 N7   Y3J 8  
Y3J C8   C8   C 0 1 Y N N 17.113 31.937 -30.432 -0.930 1.615  -0.428 C8   Y3J 9  
Y3J N9   N9   N 0 1 Y N N 16.140 31.060 -30.183 -0.761 0.370  0.102  N9   Y3J 10 
Y3J FAB  FAB  F 0 1 N N N 16.334 31.097 -24.531 4.085  2.080  0.763  FAB  Y3J 11 
Y3J FAG  FAG  F 0 1 N N N 14.395 31.669 -25.257 4.990  0.382  -0.469 FAG  Y3J 12 
Y3J CAH  CAH  C 0 1 N N N 15.614 31.421 -25.460 3.807  1.061  -0.153 CAH  Y3J 13 
Y3J CAI  CAI  C 0 1 N N S 15.793 30.565 -26.698 2.806  0.080  0.462  CAI  Y3J 14 
Y3J OAJ  OAJ  O 0 1 N N N 15.503 31.283 -27.900 1.539  0.731  0.651  OAJ  Y3J 15 
Y3J CAK  CAK  C 0 1 N N R 15.736 30.322 -28.956 0.517  -0.265 0.433  CAK  Y3J 16 
Y3J CAQ  CAQ  C 0 1 N N S 17.179 29.903 -26.945 2.575  -1.103 -0.497 CAQ  Y3J 17 
Y3J CAR  CAR  C 0 1 N N S 16.695 29.384 -28.237 1.053  -1.074 -0.776 CAR  Y3J 18 
Y3J OAS  OAS  O 0 1 N N N 17.361 28.804 -26.014 2.946  -2.333 0.128  OAS  Y3J 19 
Y3J OAT  OAT  O 0 1 N N N 16.941 28.065 -28.632 0.510  -2.396 -0.785 OAT  Y3J 20 
Y3J H2   H2   H 0 1 N N N 12.865 29.625 -32.985 -4.106 -2.524 1.154  H2   Y3J 21 
Y3J HN6  HN6  H 0 1 N N N 15.409 32.477 -35.250 -6.181 1.182  -0.506 HN6  Y3J 22 
Y3J HN6A HN6A H 0 0 N N N 15.950 33.485 -34.085 -4.957 2.263  -0.900 HN6A Y3J 23 
Y3J H8   H8   H 0 1 N N N 17.871 32.260 -29.733 -0.130 2.296  -0.675 H8   Y3J 24 
Y3J HAH  HAH  H 0 1 N N N 16.025 32.384 -25.799 3.383  1.493  -1.059 HAH  Y3J 25 
Y3J HAI  HAI  H 0 1 N N N 15.069 29.741 -26.618 3.183  -0.282 1.418  HAI  Y3J 26 
Y3J HAK  HAK  H 0 1 N N N 14.805 29.774 -29.162 0.411  -0.905 1.309  HAK  Y3J 27 
Y3J HAQ  HAQ  H 0 1 N N N 18.011 30.620 -27.007 3.135  -0.960 -1.421 HAQ  Y3J 28 
Y3J HOAS HOAS H 0 0 N N N 18.207 28.399 -26.163 3.878  -2.382 0.378  HOAS Y3J 29 
Y3J HAR  HAR  H 0 1 N N N 17.568 29.772 -28.783 0.838  -0.561 -1.713 HAR  Y3J 30 
Y3J HAT  HAT  H 0 1 N N N 17.571 27.669 -28.041 0.816  -2.941 -1.523 HAT  Y3J 31 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y3J N1  C2   DOUB Y N 1  
Y3J N1  C6   SING Y N 2  
Y3J C2  N3   SING Y N 3  
Y3J N3  C4   DOUB Y N 4  
Y3J C4  C5   SING Y N 5  
Y3J C4  N9   SING Y N 6  
Y3J C5  C6   DOUB Y N 7  
Y3J C5  N7   SING Y N 8  
Y3J C6  N6   SING N N 9  
Y3J N7  C8   DOUB Y N 10 
Y3J C8  N9   SING Y N 11 
Y3J N9  CAK  SING N N 12 
Y3J FAB CAH  SING N N 13 
Y3J FAG CAH  SING N N 14 
Y3J CAH CAI  SING N N 15 
Y3J CAI OAJ  SING N N 16 
Y3J CAI CAQ  SING N N 17 
Y3J OAJ CAK  SING N N 18 
Y3J CAK CAR  SING N N 19 
Y3J CAQ CAR  SING N N 20 
Y3J CAQ OAS  SING N N 21 
Y3J CAR OAT  SING N N 22 
Y3J C2  H2   SING N N 23 
Y3J N6  HN6  SING N N 24 
Y3J N6  HN6A SING N N 25 
Y3J C8  H8   SING N N 26 
Y3J CAH HAH  SING N N 27 
Y3J CAI HAI  SING N N 28 
Y3J CAK HAK  SING N N 29 
Y3J CAQ HAQ  SING N N 30 
Y3J OAS HOAS SING N N 31 
Y3J CAR HAR  SING N N 32 
Y3J OAT HAT  SING N N 33 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y3J InChI            InChI                1.03  "InChI=1S/C10H11F2N5O3/c11-7(12)6-4(18)5(19)10(20-6)17-2-16-3-8(13)14-1-15-9(3)17/h1-2,4-7,10,18-19H,(H2,13,14,15)/t4-,5-,6-,10+/m0/s1" 
Y3J InChIKey         InChI                1.03  YQLJSFYLQCBEKY-AVGUDYQDSA-N                                                                                                             
Y3J SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](C(F)F)[C@@H](O)[C@@H]3O"                                                                                 
Y3J SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](C(F)F)[CH](O)[CH]3O"                                                                                        
Y3J SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)[C@H]3C([C@@H]([C@H](O3)C(F)F)O)O)N"                                                                                 
Y3J SMILES           "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)C(F)F)O)O)N"                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y3J "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,4S,5S)-2-(6-aminopurin-9-yl)-5-[bis(fluoranyl)methyl]oxolane-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y3J "Create component" 2015-10-05 EBI  
Y3J "Initial release"  2015-12-23 RCSB 
# 
