data_XKJ
#

_chem_comp.id                                   XKJ
_chem_comp.name                                 "dodecyl beta-D-glucopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C18 H36 O6"
_chem_comp.mon_nstd_parent_comp_id              BGC
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-12-17
_chem_comp.pdbx_modified_date                   2021-07-30
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       348.475
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XKJ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7L16
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XKJ  C6    C1   C  0  1  N  N  N  -27.572  47.862   -4.402    5.363   2.747  -0.403  C13   XKJ   1  
XKJ  C3    C2   C  0  1  N  N  S  -26.403  45.382   -7.201    6.251  -0.945   0.228  C17   XKJ   2  
XKJ  C24   C3   C  0  1  N  N  N  -28.439  48.513  -10.594    0.106  -0.900  -0.220  C24   XKJ   3  
XKJ  C26   C4   C  0  1  N  N  N  -30.377  46.899  -11.330   -2.385  -0.705  -0.232  C26   XKJ   4  
XKJ  C28   C5   C  0  1  N  N  N  -30.157  44.346  -11.878   -4.876  -0.511  -0.244  C28   XKJ   5  
XKJ  C5    C6   C  0  1  N  N  R  -27.754  47.036   -5.743    5.245   1.339   0.183  C14   XKJ   6  
XKJ  C4    C7   C  0  1  N  N  S  -26.820  45.788   -5.756    6.410   0.479  -0.314  C16   XKJ   7  
XKJ  C1    C8   C  0  1  N  N  R  -27.118  47.615   -8.051    3.785  -0.562   0.282  C18   XKJ   8  
XKJ  C2    C9   C  0  1  N  N  R  -25.929  46.628   -7.965    4.892  -1.498  -0.211  C19   XKJ   9  
XKJ  C23   C10  C  0  1  N  N  N  -27.885  49.422   -9.461    1.403  -0.301   0.328  C23   XKJ  10  
XKJ  C25   C11  C  0  1  N  N  N  -29.904  48.023  -10.378   -1.088  -0.107   0.316  C25   XKJ  11  
XKJ  C27   C12  C  0  1  N  N  N  -29.479  45.627  -11.328   -3.579   0.088   0.304  C27   XKJ  12  
XKJ  C29   C13  C  0  1  N  N  N  -30.506  43.290  -10.800   -6.070   0.282   0.292  C29   XKJ  13  
XKJ  C30   C14  C  0  1  N  N  N  -29.293  42.422  -10.361   -7.367  -0.316  -0.256  C30   XKJ  14  
XKJ  C31   C15  C  0  1  N  N  N  -29.008  41.174  -11.242   -8.561   0.477   0.280  C31   XKJ  15  
XKJ  C32   C16  C  0  1  N  N  N  -30.252  40.325  -11.597   -9.858  -0.122  -0.268  C32   XKJ  16  
XKJ  C33   C17  C  0  1  N  N  N  -31.140  39.990  -10.380  -11.051   0.671   0.268  C33   XKJ  17  
XKJ  C34   C18  C  0  1  N  N  N  -30.358  39.452   -9.186  -12.349   0.072  -0.280  C34   XKJ  18  
XKJ  O6    O1   O  0  1  N  N  N  -26.180  47.916   -4.037    4.344   3.581   0.151  O08   XKJ  19  
XKJ  O5    O2   O  0  1  N  N  N  -27.546  47.987   -6.775    4.010   0.752  -0.234  O15   XKJ  20  
XKJ  O4    O3   O  0  1  N  N  N  -27.547  44.734   -5.190    7.643   1.032   0.150  O20   XKJ  21  
XKJ  O2    O4   O  0  1  N  N  N  -25.572  46.265   -9.263    4.702  -2.799   0.349  O21   XKJ  22  
XKJ  O1    O5   O  0  1  N  N  N  -26.788  48.782   -8.780    2.518  -1.042  -0.172  O22   XKJ  23  
XKJ  O3    O6   O  0  1  N  N  N  -25.300  44.526   -7.074    7.294  -1.773  -0.290  O35   XKJ  24  
XKJ  H61   H1   H  0  1  N  N  N  -27.949  48.885   -4.551    6.342   3.160  -0.160  H131  XKJ  25  
XKJ  H62   H2   H  0  1  N  N  N  -28.141  47.376   -3.596    5.247   2.701  -1.486  H132  XKJ  26  
XKJ  H3    H3   H  0  1  N  N  N  -27.248  44.908   -7.722    6.305  -0.929   1.317  H171  XKJ  27  
XKJ  H241  H4   H  0  0  N  N  N  -27.790  47.628  -10.672    0.115  -0.851  -1.309  H241  XKJ  28  
XKJ  H242  H5   H  0  0  N  N  N  -28.402  49.079  -11.536    0.023  -1.939   0.097  H242  XKJ  29  
XKJ  H262  H6   H  0  0  N  N  N  -30.398  47.302  -12.353   -2.376  -0.657  -1.321  H262  XKJ  30  
XKJ  H261  H7   H  0  0  N  N  N  -31.393  46.602  -11.032   -2.468  -1.745   0.085  H261  XKJ  31  
XKJ  H281  H8   H  0  0  N  N  N  -31.088  44.641  -12.384   -4.867  -0.463  -1.333  H281  XKJ  32  
XKJ  H282  H9   H  0  0  N  N  N  -29.475  43.882  -12.606   -4.959  -1.550   0.073  H282  XKJ  33  
XKJ  H5    H10  H  0  1  N  N  N  -28.794  46.679   -5.773    5.272   1.394   1.271  H141  XKJ  34  
XKJ  H4    H11  H  0  1  N  N  N  -25.916  46.010   -5.170    6.407   0.456  -1.404  H161  XKJ  35  
XKJ  H1    H12  H  0  1  N  N  N  -27.937  47.093   -8.568    3.793  -0.531   1.371  H181  XKJ  36  
XKJ  H2    H13  H  0  1  N  N  N  -25.094  47.100   -7.426    4.858  -1.561  -1.299  H191  XKJ  37  
XKJ  H232  H14  H  0  0  N  N  N  -27.535  50.369   -9.897    1.486   0.739   0.011  H232  XKJ  38  
XKJ  H231  H15  H  0  0  N  N  N  -28.688  49.626   -8.738    1.394  -0.349   1.417  H231  XKJ  39  
XKJ  H252  H16  H  0  0  N  N  N  -30.573  48.885  -10.513   -1.097  -0.155   1.405  H252  XKJ  40  
XKJ  H251  H17  H  0  0  N  N  N  -29.988  47.651   -9.346   -1.005   0.933  -0.001  H251  XKJ  41  
XKJ  H271  H18  H  0  0  N  N  N  -29.168  45.430  -10.291   -3.588   0.039   1.393  H271  XKJ  42  
XKJ  H272  H19  H  0  0  N  N  N  -28.592  45.835  -11.944   -3.496   1.127  -0.013  H272  XKJ  43  
XKJ  H291  H20  H  0  0  N  N  N  -30.897  43.813   -9.915   -6.079   0.234   1.381  H291  XKJ  44  
XKJ  H292  H21  H  0  0  N  N  N  -31.282  42.623  -11.205   -5.987   1.322  -0.025  H292  XKJ  45  
XKJ  H302  H22  H  0  0  N  N  N  -29.478  42.076   -9.333   -7.358  -0.268  -1.345  H302  XKJ  46  
XKJ  H301  H23  H  0  0  N  N  N  -28.397  43.060  -10.377   -7.450  -1.356   0.061  H301  XKJ  47  
XKJ  H312  H24  H  0  0  N  N  N  -28.298  40.530  -10.702   -8.570   0.428   1.368  H312  XKJ  48  
XKJ  H311  H25  H  0  0  N  N  N  -28.550  41.517  -12.181   -8.478   1.516  -0.037  H311  XKJ  49  
XKJ  H322  H26  H  0  0  N  N  N  -30.858  40.884  -12.326   -9.849  -0.074  -1.357  H322  XKJ  50  
XKJ  H321  H27  H  0  0  N  N  N  -29.912  39.382  -12.049   -9.940  -1.162   0.049  H321  XKJ  51  
XKJ  H331  H28  H  0  0  N  N  N  -31.664  40.906  -10.069  -11.061   0.623   1.356  H331  XKJ  52  
XKJ  H332  H29  H  0  0  N  N  N  -31.876  39.231  -10.684  -10.969   1.711  -0.049  H332  XKJ  53  
XKJ  H343  H30  H  0  0  N  N  N  -31.052  39.236   -8.360  -12.340   0.121  -1.369  H343  XKJ  54  
XKJ  H342  H31  H  0  0  N  N  N  -29.835  38.529   -9.476  -12.431  -0.967   0.036  H342  XKJ  55  
XKJ  H341  H32  H  0  0  N  N  N  -29.623  40.203   -8.861  -13.199   0.637   0.101  H341  XKJ  56  
XKJ  HO6   H33  H  0  1  N  Y  N  -26.082  48.413   -3.233    4.359   4.491  -0.177  H1    XKJ  57  
XKJ  HO4   H34  H  0  1  N  Y  N  -27.809  44.967   -4.307    8.425   0.534  -0.124  H201  XKJ  58  
XKJ  HO2   H35  H  0  1  N  Y  N  -24.842  45.658   -9.233    3.857  -3.208   0.116  H211  XKJ  59  
XKJ  HO3   H36  H  0  1  N  Y  N  -25.559  43.742   -6.604    7.255  -2.690   0.013  H351  XKJ  60  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XKJ  C28  C27   SING  N  N   1  
XKJ  C28  C29   SING  N  N   2  
XKJ  C32  C31   SING  N  N   3  
XKJ  C32  C33   SING  N  N   4  
XKJ  C26  C27   SING  N  N   5  
XKJ  C26  C25   SING  N  N   6  
XKJ  C31  C30   SING  N  N   7  
XKJ  C29  C30   SING  N  N   8  
XKJ  C24  C25   SING  N  N   9  
XKJ  C24  C23   SING  N  N  10  
XKJ  C33  C34   SING  N  N  11  
XKJ  C23  O1    SING  N  N  12  
XKJ  O2   C2    SING  N  N  13  
XKJ  O1   C1    SING  N  N  14  
XKJ  C1   C2    SING  N  N  15  
XKJ  C1   O5    SING  N  N  16  
XKJ  C2   C3    SING  N  N  17  
XKJ  C3   O3    SING  N  N  18  
XKJ  C3   C4    SING  N  N  19  
XKJ  O5   C5    SING  N  N  20  
XKJ  C4   C5    SING  N  N  21  
XKJ  C4   O4    SING  N  N  22  
XKJ  C5   C6    SING  N  N  23  
XKJ  C6   O6    SING  N  N  24  
XKJ  C6   H61   SING  N  N  25  
XKJ  C6   H62   SING  N  N  26  
XKJ  C3   H3    SING  N  N  27  
XKJ  C24  H241  SING  N  N  28  
XKJ  C24  H242  SING  N  N  29  
XKJ  C26  H262  SING  N  N  30  
XKJ  C26  H261  SING  N  N  31  
XKJ  C28  H281  SING  N  N  32  
XKJ  C28  H282  SING  N  N  33  
XKJ  C5   H5    SING  N  N  34  
XKJ  C4   H4    SING  N  N  35  
XKJ  C1   H1    SING  N  N  36  
XKJ  C2   H2    SING  N  N  37  
XKJ  C23  H232  SING  N  N  38  
XKJ  C23  H231  SING  N  N  39  
XKJ  C25  H252  SING  N  N  40  
XKJ  C25  H251  SING  N  N  41  
XKJ  C27  H271  SING  N  N  42  
XKJ  C27  H272  SING  N  N  43  
XKJ  C29  H291  SING  N  N  44  
XKJ  C29  H292  SING  N  N  45  
XKJ  C30  H302  SING  N  N  46  
XKJ  C30  H301  SING  N  N  47  
XKJ  C31  H312  SING  N  N  48  
XKJ  C31  H311  SING  N  N  49  
XKJ  C32  H322  SING  N  N  50  
XKJ  C32  H321  SING  N  N  51  
XKJ  C33  H331  SING  N  N  52  
XKJ  C33  H332  SING  N  N  53  
XKJ  C34  H343  SING  N  N  54  
XKJ  C34  H342  SING  N  N  55  
XKJ  C34  H341  SING  N  N  56  
XKJ  O6   HO6   SING  N  N  57  
XKJ  O4   HO4   SING  N  N  58  
XKJ  O2   HO2   SING  N  N  59  
XKJ  O3   HO3   SING  N  N  60  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XKJ  SMILES            ACDLabs               12.01  "C(O)C1C(C(O)C(C(O1)OCCCCCCCCCCCC)O)O"  
XKJ  InChI             InChI                 1.03   "InChI=1S/C18H36O6/c1-2-3-4-5-6-7-8-9-10-11-12-23-18-17(22)16(21)15(20)14(13-19)24-18/h14-22H,2-13H2,1H3/t14-,15-,16+,17-,18-/m1/s1"  
XKJ  InChIKey          InChI                 1.03   PYIDGJJWBIBVIA-UYTYNIKBSA-N  
XKJ  SMILES_CANONICAL  CACTVS                3.385  "CCCCCCCCCCCCO[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O"  
XKJ  SMILES            CACTVS                3.385  "CCCCCCCCCCCCO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O"  
XKJ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCCCCCCCCCCCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O"  
XKJ  SMILES            "OpenEye OEToolkits"  2.0.7  "CCCCCCCCCCCCOC1C(C(C(C(O1)CO)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XKJ  "SYSTEMATIC NAME"  ACDLabs               12.01  "dodecyl beta-D-glucopyranoside"  
XKJ  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{R},3~{R},4~{S},5~{S},6~{R})-2-dodecoxy-6-(hydroxymethyl)oxane-3,4,5-triol"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
XKJ  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
XKJ  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
XKJ  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
XKJ  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#
_pdbx_chem_comp_related.comp_id            XKJ
_pdbx_chem_comp_related.related_comp_id    BGC
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  XKJ  C6   BGC  C6   "Carbohydrate core"  
 2  XKJ  C3   BGC  C3   "Carbohydrate core"  
 3  XKJ  C5   BGC  C5   "Carbohydrate core"  
 4  XKJ  C4   BGC  C4   "Carbohydrate core"  
 5  XKJ  C1   BGC  C1   "Carbohydrate core"  
 6  XKJ  C2   BGC  C2   "Carbohydrate core"  
 7  XKJ  O6   BGC  O6   "Carbohydrate core"  
 8  XKJ  O5   BGC  O5   "Carbohydrate core"  
 9  XKJ  O4   BGC  O4   "Carbohydrate core"  
10  XKJ  O2   BGC  O2   "Carbohydrate core"  
11  XKJ  O1   BGC  O1   "Carbohydrate core"  
12  XKJ  O3   BGC  O3   "Carbohydrate core"  
13  XKJ  H61  BGC  H61  "Carbohydrate core"  
14  XKJ  H62  BGC  H62  "Carbohydrate core"  
15  XKJ  H3   BGC  H3   "Carbohydrate core"  
16  XKJ  H5   BGC  H5   "Carbohydrate core"  
17  XKJ  H4   BGC  H4   "Carbohydrate core"  
18  XKJ  H1   BGC  H1   "Carbohydrate core"  
19  XKJ  H2   BGC  H2   "Carbohydrate core"  
20  XKJ  HO6  BGC  HO6  "Carbohydrate core"  
21  XKJ  HO4  BGC  HO4  "Carbohydrate core"  
22  XKJ  HO2  BGC  HO2  "Carbohydrate core"  
23  XKJ  HO3  BGC  HO3  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XKJ  "Create component"  2020-12-17  RCSB  
XKJ  "Initial release"   2021-08-04  RCSB  
##
