data_X8J
#

_chem_comp.id                                   X8J
_chem_comp.name                                 "5-ethyl-2-{[2-methoxy-4-(4-methylpiperazin-1-yl)phenyl]amino}-11-methyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H31 N7 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-12-03
_chem_comp.pdbx_modified_date                   2021-09-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       473.570
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    X8J
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7KX8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
X8J  N1   N1   N  0  1  Y  N  N  57.864   -8.563   98.788   1.902  -1.435  -0.086  N1   X8J   1  
X8J  C7   C1   C  0  1  Y  N  N  57.207   -6.404  102.223  -2.785  -1.977  -0.453  C7   X8J   2  
X8J  C8   C2   C  0  1  N  N  N  57.630   -7.026  104.489  -3.734  -4.006  -1.251  C8   X8J   3  
X8J  N2   N2   N  0  1  N  N  N  58.664   -7.367  100.582  -0.415  -1.743  -0.011  N2   X8J   4  
X8J  C9   C3   C  0  1  Y  N  N  56.119   -5.628  102.573  -4.059  -1.436  -0.481  C9   X8J   5  
X8J  O1   O1   O  0  1  N  N  N  57.979   -7.101  103.109  -2.584  -3.267  -0.834  O1   X8J   6  
X8J  C1   C4   C  0  1  N  N  N  59.941  -12.633   97.401   3.740   2.333  -2.189  C1   X8J   7  
X8J  C5   C5   C  0  1  Y  N  N  58.870   -8.334   99.646   0.686  -0.931  -0.236  C5   X8J   8  
X8J  C6   C6   C  0  1  Y  N  N  57.591   -6.526  100.889  -1.707  -1.197  -0.040  C6   X8J   9  
X8J  N3   N3   N  0  1  N  N  N  54.263   -4.212  101.935  -5.549   0.429  -0.120  N3   X8J  10  
X8J  C4   C7   C  0  1  Y  N  N  58.065   -9.526   97.882   2.976  -0.682  -0.294  C4   X8J  11  
X8J  C3   C8   C  0  1  Y  N  N  59.265  -10.280   97.835   2.813   0.643  -0.706  C3   X8J  12  
X8J  C2   C9   C  0  1  N  N  N  58.973  -13.788   97.377   4.319   1.646  -3.428  C2   X8J  13  
X8J  N4   N4   N  0  1  N  N  N  51.718   -2.895  101.941  -7.875   1.613   1.017  N4   X8J  14  
X8J  N    N5   N  0  1  N  N  N  59.491  -11.329   96.891   3.899   1.456  -1.026  N    X8J  15  
X8J  C    C10  C  0  1  N  N  N  59.312  -11.210   95.543   5.060   1.521  -0.389  C    X8J  16  
X8J  O    O2   O  0  1  N  N  N  59.730  -12.062   94.781   5.888   2.299  -0.822  O    X8J  17  
X8J  C10  C11  C  0  1  Y  N  N  55.386   -4.954  101.596  -4.261  -0.118  -0.092  C10  X8J  18  
X8J  C11  C12  C  0  1  N  N  N  53.016   -4.967  102.081  -5.536   1.829   0.329  C11  X8J  19  
X8J  C12  C13  C  0  1  N  N  N  51.945   -4.108  102.720  -6.945   2.413   0.208  C12  X8J  20  
X8J  C13  C14  C  0  1  N  N  N  50.655   -2.086  102.539  -9.227   2.188   0.987  C13  X8J  21  
X8J  C14  C15  C  0  1  N  N  N  52.962   -2.135  101.857  -7.888   0.214   0.568  C14  X8J  22  
X8J  C15  C16  C  0  1  N  N  N  54.055   -2.960  101.204  -6.479  -0.371   0.688  C15  X8J  23  
X8J  C16  C17  C  0  1  Y  N  N  55.784   -5.065  100.268  -3.187   0.656   0.325  C16  X8J  24  
X8J  C17  C18  C  0  1  Y  N  N  56.874   -5.840   99.915  -1.913   0.121   0.343  C17  X8J  25  
X8J  C18  C19  C  0  1  Y  N  N  60.222   -9.939   98.779   1.521   1.134  -0.836  C18  X8J  26  
X8J  C19  C20  C  0  1  N  N  N  55.743   -9.334   97.346   4.730  -2.350  -0.823  C19  X8J  27  
X8J  C20  C21  C  0  1  Y  N  N  57.542   -9.348   95.639   5.043  -0.605   0.911  C20  X8J  28  
X8J  C21  C22  C  0  1  Y  N  N  58.599  -10.013   95.000   5.430   0.734   0.794  C21  X8J  29  
X8J  C22  C23  C  0  1  Y  N  N  59.051   -9.547   93.768   6.185   1.324   1.813  C22  X8J  30  
X8J  C23  C24  C  0  1  Y  N  N  58.458   -8.442   93.184   6.569   0.579   2.906  C23  X8J  31  
X8J  C24  C25  C  0  1  Y  N  N  57.416   -7.797   93.813   6.212  -0.757   3.002  C24  X8J  32  
X8J  C25  C26  C  0  1  Y  N  N  56.952   -8.243   95.038   5.453  -1.348   2.012  C25  X8J  33  
X8J  N5   N6   N  0  1  Y  N  N  60.048   -8.971   99.687   0.496   0.329  -0.596  N5   X8J  34  
X8J  N6   N7   N  0  1  N  N  N  57.077   -9.754   96.922   4.243  -1.198  -0.059  N6   X8J  35  
X8J  H1   H1   H  0  1  N  N  N  58.333   -7.632  105.079  -4.454  -4.050  -0.434  H1   X8J  36  
X8J  H2   H2   H  0  1  N  N  N  57.678   -5.979  104.823  -4.190  -3.515  -2.110  H2   X8J  37  
X8J  H3   H3   H  0  1  N  N  N  56.609   -7.409  104.630  -3.435  -5.017  -1.527  H3   X8J  38  
X8J  H4   H4   H  0  1  N  N  N  59.453   -7.228  101.181  -0.292  -2.688   0.167  H4   X8J  39  
X8J  H5   H5   H  0  1  N  N  N  55.834   -5.542  103.611  -4.895  -2.038  -0.805  H5   X8J  40  
X8J  H6   H6   H  0  1  N  N  N  60.816  -12.930   96.805   4.269   3.270  -2.013  H6   X8J  41  
X8J  H7   H7   H  0  1  N  N  N  60.244  -12.485   98.448   2.681   2.537  -2.348  H7   X8J  42  
X8J  H8   H8   H  0  1  N  N  N  59.460  -14.684   97.789   3.735   0.754  -3.655  H8   X8J  43  
X8J  H9   H9   H  0  1  N  N  N  58.090  -13.539   97.984   4.280   2.331  -4.274  H9   X8J  44  
X8J  H10  H10  H  0  1  N  N  N  58.662  -13.984   96.340   5.354   1.363  -3.236  H10  X8J  45  
X8J  H12  H12  H  0  1  N  N  N  52.673   -5.294  101.088  -5.211   1.874   1.368  H12  X8J  46  
X8J  H13  H13  H  0  1  N  N  N  53.199   -5.848  102.714  -4.849   2.403  -0.293  H13  X8J  47  
X8J  H14  H14  H  0  1  N  N  N  52.264   -3.830  103.735  -7.259   2.393  -0.835  H14  X8J  48  
X8J  H15  H15  H  0  1  N  N  N  51.008   -4.682  102.775  -6.944   3.442   0.568  H15  X8J  49  
X8J  H16  H16  H  0  1  N  N  N  49.729   -2.678  102.592  -9.589   2.213  -0.041  H16  X8J  50  
X8J  H17  H17  H  0  1  N  N  N  50.953   -1.780  103.553  -9.895   1.576   1.593  H17  X8J  51  
X8J  H18  H18  H  0  1  N  N  N  50.484   -1.192  101.922  -9.199   3.201   1.387  H18  X8J  52  
X8J  H19  H19  H  0  1  N  N  N  53.281   -1.852  102.871  -8.575  -0.361   1.189  H19  X8J  53  
X8J  H20  H20  H  0  1  N  N  N  52.790   -1.227  101.260  -8.214   0.168  -0.472  H20  X8J  54  
X8J  H21  H21  H  0  1  N  N  N  53.764   -3.190  100.168  -6.481  -1.400   0.329  H21  X8J  55  
X8J  H22  H22  H  0  1  N  N  N  54.991   -2.383  101.202  -6.165  -0.351   1.732  H22  X8J  56  
X8J  H23  H23  H  0  1  N  N  N  55.234   -4.539   99.502  -3.345   1.681   0.626  H23  X8J  57  
X8J  H24  H24  H  0  1  N  N  N  57.169   -5.913   98.879  -1.078   0.725   0.668  H24  X8J  58  
X8J  H25  H25  H  0  1  N  N  N  61.155  -10.482   98.782   1.353   2.159  -1.130  H25  X8J  59  
X8J  H26  H26  H  0  1  N  N  N  55.537   -9.727   98.353   4.461  -3.270  -0.303  H26  X8J  60  
X8J  H27  H27  H  0  1  N  N  N  55.693   -8.235   97.364   4.277  -2.347  -1.814  H27  X8J  61  
X8J  H28  H28  H  0  1  N  N  N  54.995   -9.723   96.640   5.814  -2.290  -0.918  H28  X8J  62  
X8J  H29  H29  H  0  1  N  N  N  59.866  -10.049   93.268   6.467   2.365   1.742  H29  X8J  63  
X8J  H30  H30  H  0  1  N  N  N  58.814   -8.083   92.230   7.150   1.037   3.692  H30  X8J  64  
X8J  H31  H31  H  0  1  N  N  N  56.958   -6.937   93.347   6.529  -1.338   3.855  H31  X8J  65  
X8J  H32  H32  H  0  1  N  N  N  56.134   -7.734   95.525   5.177  -2.389   2.093  H32  X8J  66  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
X8J  C23  C22  DOUB  Y  N   1  
X8J  C23  C24  SING  Y  N   2  
X8J  C22  C21  SING  Y  N   3  
X8J  C24  C25  DOUB  Y  N   4  
X8J  O    C    DOUB  N  N   5  
X8J  C21  C    SING  N  N   6  
X8J  C21  C20  DOUB  Y  N   7  
X8J  C25  C20  SING  Y  N   8  
X8J  C    N    SING  N  N   9  
X8J  C20  N6   SING  N  N  10  
X8J  N    C1   SING  N  N  11  
X8J  N    C3   SING  N  N  12  
X8J  N6   C19  SING  N  N  13  
X8J  N6   C4   SING  N  N  14  
X8J  C2   C1   SING  N  N  15  
X8J  C3   C4   DOUB  Y  N  16  
X8J  C3   C18  SING  Y  N  17  
X8J  C4   N1   SING  Y  N  18  
X8J  C18  N5   DOUB  Y  N  19  
X8J  N1   C5   DOUB  Y  N  20  
X8J  C5   N5   SING  Y  N  21  
X8J  C5   N2   SING  N  N  22  
X8J  C17  C16  DOUB  Y  N  23  
X8J  C17  C6   SING  Y  N  24  
X8J  C16  C10  SING  Y  N  25  
X8J  N2   C6   SING  N  N  26  
X8J  C6   C7   DOUB  Y  N  27  
X8J  C15  C14  SING  N  N  28  
X8J  C15  N3   SING  N  N  29  
X8J  C10  N3   SING  N  N  30  
X8J  C10  C9   DOUB  Y  N  31  
X8J  C14  N4   SING  N  N  32  
X8J  N3   C11  SING  N  N  33  
X8J  N4   C13  SING  N  N  34  
X8J  N4   C12  SING  N  N  35  
X8J  C11  C12  SING  N  N  36  
X8J  C7   C9   SING  Y  N  37  
X8J  C7   O1   SING  N  N  38  
X8J  O1   C8   SING  N  N  39  
X8J  C8   H1   SING  N  N  40  
X8J  C8   H2   SING  N  N  41  
X8J  C8   H3   SING  N  N  42  
X8J  N2   H4   SING  N  N  43  
X8J  C9   H5   SING  N  N  44  
X8J  C1   H6   SING  N  N  45  
X8J  C1   H7   SING  N  N  46  
X8J  C2   H8   SING  N  N  47  
X8J  C2   H9   SING  N  N  48  
X8J  C2   H10  SING  N  N  49  
X8J  C11  H12  SING  N  N  50  
X8J  C11  H13  SING  N  N  51  
X8J  C12  H14  SING  N  N  52  
X8J  C12  H15  SING  N  N  53  
X8J  C13  H16  SING  N  N  54  
X8J  C13  H17  SING  N  N  55  
X8J  C13  H18  SING  N  N  56  
X8J  C14  H19  SING  N  N  57  
X8J  C14  H20  SING  N  N  58  
X8J  C15  H21  SING  N  N  59  
X8J  C15  H22  SING  N  N  60  
X8J  C16  H23  SING  N  N  61  
X8J  C17  H24  SING  N  N  62  
X8J  C18  H25  SING  N  N  63  
X8J  C19  H26  SING  N  N  64  
X8J  C19  H27  SING  N  N  65  
X8J  C19  H28  SING  N  N  66  
X8J  C22  H29  SING  N  N  67  
X8J  C23  H30  SING  N  N  68  
X8J  C24  H31  SING  N  N  69  
X8J  C25  H32  SING  N  N  70  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
X8J  SMILES            ACDLabs               12.01  "n3c(Nc2c(cc(N1CCN(C)CC1)cc2)OC)ncc4c3N(C)c5c(C(N4CC)=O)cccc5"  
X8J  InChI             InChI                 1.03   "InChI=1S/C26H31N7O2/c1-5-33-22-17-27-26(29-24(22)31(3)21-9-7-6-8-19(21)25(33)34)28-20-11-10-18(16-23(20)35-4)32-14-12-30(2)13-15-32/h6-11,16-17H,5,12-15H2,1-4H3,(H,27,28,29)"  
X8J  InChIKey          InChI                 1.03   REPCEIPSIPNRSG-UHFFFAOYSA-N  
X8J  SMILES_CANONICAL  CACTVS                3.385  "CCN1C(=O)c2ccccc2N(C)c3nc(Nc4ccc(cc4OC)N5CCN(C)CC5)ncc13"  
X8J  SMILES            CACTVS                3.385  "CCN1C(=O)c2ccccc2N(C)c3nc(Nc4ccc(cc4OC)N5CCN(C)CC5)ncc13"  
X8J  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCN1c2cnc(nc2N(c3ccccc3C1=O)C)Nc4ccc(cc4OC)N5CCN(CC5)C"  
X8J  SMILES            "OpenEye OEToolkits"  2.0.7  "CCN1c2cnc(nc2N(c3ccccc3C1=O)C)Nc4ccc(cc4OC)N5CCN(CC5)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
X8J  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-ethyl-2-{[2-methoxy-4-(4-methylpiperazin-1-yl)phenyl]amino}-11-methyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one"  
X8J  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "5-ethyl-2-[[2-methoxy-4-(4-methylpiperazin-1-yl)phenyl]amino]-11-methyl-pyrimido[4,5-b][1,4]benzodiazepin-6-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
X8J  "Create component"  2020-12-03  RCSB  
X8J  "Initial release"   2021-09-22  RCSB  
##
