data_X6J
#

_chem_comp.id                                   X6J
_chem_comp.name                                 "tert-butyl [(2R)-1-(naphthalen-1-yl)-3-{[(2S)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C35 H41 N3 O3 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-12-01
_chem_comp.pdbx_modified_date                   2021-01-15
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       583.783
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    X6J
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7KVP
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
X6J  C10  C1   C  0  1  N  N  N  -23.377  -15.120   -9.130  -1.846   0.705  -0.369  C10  X6J   1  
X6J  C01  C2   C  0  1  N  N  N  -25.629  -10.470   -9.774  -1.154  -4.122  -1.132  C01  X6J   2  
X6J  C02  C3   C  0  1  N  N  N  -24.891  -11.343  -10.806  -2.568  -4.362  -0.600  C02  X6J   3  
X6J  C03  C4   C  0  1  N  N  N  -25.834  -12.441  -11.248  -3.558  -4.367  -1.766  C03  X6J   4  
X6J  C04  C5   C  0  1  N  N  N  -24.557  -10.535  -12.049  -2.621  -5.712   0.119  C04  X6J   5  
X6J  C06  C6   C  0  1  N  N  N  -22.833  -12.634  -11.093  -2.923  -2.046  -0.148  C06  X6J   6  
X6J  C09  C7   C  0  1  N  N  R  -22.423  -14.968  -10.291  -3.244   0.352   0.143  C09  X6J   7  
X6J  C12  C8   C  0  1  N  N  S  -24.299  -17.427   -7.770   0.937   0.873   0.169  C12  X6J   8  
X6J  C13  C9   C  0  1  N  N  N  -25.145  -18.660   -7.999   1.009   2.330  -0.291  C13  X6J   9  
X6J  C14  C10  C  0  1  Y  N  N  -25.045  -19.387   -6.685   2.266   2.540  -1.096  C14  X6J  10  
X6J  C15  C11  C  0  1  Y  N  N  -24.964  -20.761   -6.674   2.286   2.224  -2.441  C15  X6J  11  
X6J  C16  C12  C  0  1  Y  N  N  -24.849  -21.369   -5.448   3.439   2.417  -3.180  C16  X6J  12  
X6J  C17  C13  C  0  1  Y  N  N  -24.812  -20.625   -4.286   4.571   2.927  -2.572  C17  X6J  13  
X6J  C18  C14  C  0  1  Y  N  N  -24.873  -19.247   -4.301   4.551   3.244  -1.227  C18  X6J  14  
X6J  C19  C15  C  0  1  Y  N  N  -25.004  -18.629   -5.512   3.397   3.055  -0.490  C19  X6J  15  
X6J  C20  C16  C  0  1  N  N  N  -22.851  -17.694   -7.284   2.060   0.594   1.133  C20  X6J  16  
X6J  C23  C17  C  0  1  N  N  N  -20.816  -18.932   -6.896   4.395   0.079   1.607  C23  X6J  17  
X6J  C24  C18  C  0  1  N  N  N  -19.951  -20.143   -7.214   5.688  -0.163   0.826  C24  X6J  18  
X6J  C25  C19  C  0  1  N  N  N  -20.806  -21.286   -7.737   6.829  -0.446   1.806  C25  X6J  19  
X6J  C26  C20  C  0  1  Y  N  N  -20.160  -21.897   -8.968   8.104  -0.684   1.037  C26  X6J  20  
X6J  C27  C21  C  0  1  Y  N  N  -20.982  -22.229  -10.016   8.945   0.374   0.728  C27  X6J  21  
X6J  C28  C22  C  0  1  Y  N  N  -20.415  -22.777  -11.138  10.107   0.108   0.019  C28  X6J  22  
X6J  C29  C23  C  0  1  Y  N  N  -19.043  -22.981  -11.171  10.385  -1.194  -0.353  C29  X6J  23  
X6J  C31  C24  C  0  1  Y  N  N  -18.788  -22.111   -9.060   8.451  -1.960   0.636  C31  X6J  24  
X6J  C32  C25  C  0  1  N  N  N  -22.189  -16.318  -10.966  -4.250   0.461  -1.005  C32  X6J  25  
X6J  C33  C26  C  0  1  Y  N  N  -20.866  -16.942  -10.516  -5.642   0.233  -0.475  C33  X6J  26  
X6J  C34  C27  C  0  1  Y  N  N  -20.150  -16.477   -9.411  -6.203  -1.005  -0.533  C34  X6J  27  
X6J  C35  C28  C  0  1  Y  N  N  -18.944  -17.103   -9.067  -7.489  -1.235  -0.048  C35  X6J  28  
X6J  C36  C29  C  0  1  Y  N  N  -18.467  -18.177   -9.815  -8.223  -0.227   0.498  C36  X6J  29  
X6J  C37  C30  C  0  1  Y  N  N  -19.217  -18.635  -10.944  -7.677   1.066   0.576  C37  X6J  30  
X6J  C38  C31  C  0  1  Y  N  N  -18.777  -19.723  -11.741  -8.404   2.132   1.132  C38  X6J  31  
X6J  C39  C32  C  0  1  Y  N  N  -19.527  -20.144  -12.841  -7.843   3.372   1.191  C39  X6J  32  
X6J  C40  C33  C  0  1  Y  N  N  -20.729  -19.511  -13.166  -6.557   3.601   0.706  C40  X6J  33  
X6J  C41  C34  C  0  1  Y  N  N  -21.163  -18.448  -12.392  -5.824   2.592   0.160  C41  X6J  34  
X6J  C42  C35  C  0  1  Y  N  N  -20.387  -18.023  -11.277  -6.367   1.298   0.088  C42  X6J  35  
X6J  N08  N1   N  0  1  N  N  N  -23.037  -14.080  -11.261  -3.242  -1.017   0.663  N08  X6J  36  
X6J  N22  N2   N  0  1  N  N  N  -22.161  -18.967   -7.466   3.302   0.350   0.669  N22  X6J  37  
X6J  N30  N3   N  0  1  Y  N  N  -18.279  -22.644  -10.153   9.561  -2.175  -0.042  N30  X6J  38  
X6J  O05  O1   O  0  1  N  N  N  -23.700  -11.897  -10.227  -2.921  -3.304   0.330  O05  X6J  39  
X6J  O07  O2   O  0  1  N  N  N  -21.951  -12.106  -11.684  -2.637  -1.837  -1.310  O07  X6J  40  
X6J  O21  O3   O  0  1  N  N  N  -22.266  -16.846   -6.698   1.848   0.589   2.327  O21  X6J  41  
X6J  S11  S1   S  0  1  N  N  N  -24.229  -16.690   -9.392  -0.653   0.577   0.991  S11  X6J  42  
X6J  H1   H1   H  0  1  N  N  N  -22.823  -15.139   -8.180  -1.566   0.015  -1.165  H1   X6J  43  
X6J  H2   H2   H  0  1  N  N  N  -24.099  -14.290   -9.117  -1.847   1.724  -0.756  H2   X6J  44  
X6J  H3   H3   H  0  1  N  N  N  -25.862  -11.072   -8.883  -0.449  -4.119  -0.300  H3   X6J  45  
X6J  H4   H4   H  0  1  N  N  N  -24.990   -9.622   -9.487  -0.889  -4.916  -1.829  H4   X6J  46  
X6J  H5   H5   H  0  1  N  N  N  -26.563  -10.092  -10.215  -1.116  -3.161  -1.644  H5   X6J  47  
X6J  H6   H6   H  0  1  N  N  N  -26.109  -13.060  -10.381  -3.520  -3.405  -2.279  H6   X6J  48  
X6J  H7   H7   H  0  1  N  N  N  -26.740  -11.993  -11.681  -3.293  -5.161  -2.465  H7   X6J  49  
X6J  H8   H8   H  0  1  N  N  N  -25.338  -13.068  -12.003  -4.565  -4.538  -1.388  H8   X6J  50  
X6J  H9   H9   H  0  1  N  N  N  -23.870   -9.718  -11.782  -3.628  -5.883   0.498  H9   X6J  51  
X6J  H10  H10  H  0  1  N  N  N  -24.078  -11.188  -12.793  -2.356  -6.506  -0.579  H10  X6J  52  
X6J  H11  H11  H  0  1  N  N  N  -25.481  -10.113  -12.471  -1.916  -5.708   0.951  H11  X6J  53  
X6J  H12  H12  H  0  1  N  N  N  -21.465  -14.558   -9.938  -3.524   1.043   0.938  H12  X6J  54  
X6J  H13  H13  H  0  1  N  N  N  -24.807  -16.717   -7.100   1.027   0.214  -0.695  H13  X6J  55  
X6J  H14  H14  H  0  1  N  N  N  -26.187  -18.389   -8.222   0.140   2.560  -0.908  H14  X6J  56  
X6J  H15  H15  H  0  1  N  N  N  -24.741  -19.270   -8.820   1.021   2.986   0.579  H15  X6J  57  
X6J  H16  H16  H  0  1  N  N  N  -24.990  -21.335   -7.588   1.402   1.825  -2.916  H16  X6J  58  
X6J  H17  H17  H  0  1  N  N  N  -24.787  -22.446   -5.392   3.455   2.169  -4.231  H17  X6J  59  
X6J  H18  H18  H  0  1  N  N  N  -24.733  -21.136   -3.338   5.472   3.077  -3.149  H18  X6J  60  
X6J  H19  H19  H  0  1  N  N  N  -24.819  -18.676   -3.386   5.436   3.642  -0.752  H19  X6J  61  
X6J  H20  H20  H  0  1  N  N  N  -25.076  -17.553   -5.563   3.380   3.307   0.560  H20  X6J  62  
X6J  H21  H21  H  0  1  N  N  N  -20.305  -18.037   -7.281   4.156  -0.806   2.197  H21  X6J  63  
X6J  H22  H22  H  0  1  N  N  N  -20.911  -18.858   -5.803   4.525   0.934   2.270  H22  X6J  64  
X6J  H23  H23  H  0  1  N  N  N  -19.433  -20.468   -6.300   5.558  -1.018   0.163  H23  X6J  65  
X6J  H24  H24  H  0  1  N  N  N  -19.209  -19.867   -7.978   5.927   0.722   0.236  H24  X6J  66  
X6J  H25  H25  H  0  1  N  N  N  -21.803  -20.904   -8.001   6.959   0.409   2.469  H25  X6J  67  
X6J  H26  H26  H  0  1  N  N  N  -20.903  -22.055   -6.957   6.590  -1.331   2.396  H26  X6J  68  
X6J  H27  H27  H  0  1  N  N  N  -22.048  -22.063   -9.958   8.701   1.381   1.032  H27  X6J  69  
X6J  H28  H28  H  0  1  N  N  N  -21.029  -23.046  -11.985  10.785   0.907  -0.239  H28  X6J  70  
X6J  H29  H29  H  0  1  N  N  N  -18.594  -23.424  -12.047  11.288  -1.409  -0.905  H29  X6J  71  
X6J  H30  H30  H  0  1  N  N  N  -18.142  -21.841   -8.238   7.803  -2.790   0.877  H30  X6J  72  
X6J  H31  H31  H  0  1  N  N  N  -22.165  -16.174  -12.056  -4.188   1.454  -1.449  H31  X6J  73  
X6J  H32  H32  H  0  1  N  N  N  -23.013  -16.998  -10.704  -4.022  -0.291  -1.760  H32  X6J  74  
X6J  H33  H33  H  0  1  N  N  N  -20.521  -15.646   -8.829  -5.642  -1.823  -0.962  H33  X6J  75  
X6J  H34  H34  H  0  1  N  N  N  -18.381  -16.750   -8.216  -7.911  -2.227  -0.107  H34  X6J  76  
X6J  H35  H35  H  0  1  N  N  N  -17.539  -18.660   -9.545  -9.218  -0.419   0.869  H35  X6J  77  
X6J  H36  H36  H  0  1  N  N  N  -17.855  -20.229  -11.495  -9.402   1.970   1.511  H36  X6J  78  
X6J  H37  H37  H  0  1  N  N  N  -19.175  -20.966  -13.446  -8.404   4.189   1.619  H37  X6J  79  
X6J  H38  H38  H  0  1  N  N  N  -21.313  -19.847  -14.011  -6.136   4.594   0.765  H38  X6J  80  
X6J  H39  H39  H  0  1  N  N  N  -22.087  -17.943  -12.633  -4.829   2.785  -0.212  H39  X6J  81  
X6J  H40  H40  H  0  1  N  N  N  -23.581  -14.440  -12.019  -3.470  -1.184   1.591  H40  X6J  82  
X6J  H41  H41  H  0  1  N  N  N  -22.558  -19.763   -7.923   3.472   0.354  -0.286  H41  X6J  83  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
X6J  C40  C39  DOUB  Y  N   1  
X6J  C40  C41  SING  Y  N   2  
X6J  C39  C38  SING  Y  N   3  
X6J  C41  C42  DOUB  Y  N   4  
X6J  C04  C02  SING  N  N   5  
X6J  C38  C37  DOUB  Y  N   6  
X6J  O07  C06  DOUB  N  N   7  
X6J  C42  C37  SING  Y  N   8  
X6J  C42  C33  SING  Y  N   9  
X6J  N08  C06  SING  N  N  10  
X6J  N08  C09  SING  N  N  11  
X6J  C03  C02  SING  N  N  12  
X6J  C29  C28  DOUB  Y  N  13  
X6J  C29  N30  SING  Y  N  14  
X6J  C28  C27  SING  Y  N  15  
X6J  C06  O05  SING  N  N  16  
X6J  C32  C33  SING  N  N  17  
X6J  C32  C09  SING  N  N  18  
X6J  C37  C36  SING  Y  N  19  
X6J  C02  O05  SING  N  N  20  
X6J  C02  C01  SING  N  N  21  
X6J  C33  C34  DOUB  Y  N  22  
X6J  C09  C10  SING  N  N  23  
X6J  N30  C31  DOUB  Y  N  24  
X6J  C27  C26  DOUB  Y  N  25  
X6J  C36  C35  DOUB  Y  N  26  
X6J  C34  C35  SING  Y  N  27  
X6J  S11  C10  SING  N  N  28  
X6J  S11  C12  SING  N  N  29  
X6J  C31  C26  SING  Y  N  30  
X6J  C26  C25  SING  N  N  31  
X6J  C13  C12  SING  N  N  32  
X6J  C13  C14  SING  N  N  33  
X6J  C12  C20  SING  N  N  34  
X6J  C25  C24  SING  N  N  35  
X6J  N22  C20  SING  N  N  36  
X6J  N22  C23  SING  N  N  37  
X6J  C20  O21  DOUB  N  N  38  
X6J  C24  C23  SING  N  N  39  
X6J  C14  C15  DOUB  Y  N  40  
X6J  C14  C19  SING  Y  N  41  
X6J  C15  C16  SING  Y  N  42  
X6J  C19  C18  DOUB  Y  N  43  
X6J  C16  C17  DOUB  Y  N  44  
X6J  C18  C17  SING  Y  N  45  
X6J  C10  H1   SING  N  N  46  
X6J  C10  H2   SING  N  N  47  
X6J  C01  H3   SING  N  N  48  
X6J  C01  H4   SING  N  N  49  
X6J  C01  H5   SING  N  N  50  
X6J  C03  H6   SING  N  N  51  
X6J  C03  H7   SING  N  N  52  
X6J  C03  H8   SING  N  N  53  
X6J  C04  H9   SING  N  N  54  
X6J  C04  H10  SING  N  N  55  
X6J  C04  H11  SING  N  N  56  
X6J  C09  H12  SING  N  N  57  
X6J  C12  H13  SING  N  N  58  
X6J  C13  H14  SING  N  N  59  
X6J  C13  H15  SING  N  N  60  
X6J  C15  H16  SING  N  N  61  
X6J  C16  H17  SING  N  N  62  
X6J  C17  H18  SING  N  N  63  
X6J  C18  H19  SING  N  N  64  
X6J  C19  H20  SING  N  N  65  
X6J  C23  H21  SING  N  N  66  
X6J  C23  H22  SING  N  N  67  
X6J  C24  H23  SING  N  N  68  
X6J  C24  H24  SING  N  N  69  
X6J  C25  H25  SING  N  N  70  
X6J  C25  H26  SING  N  N  71  
X6J  C27  H27  SING  N  N  72  
X6J  C28  H28  SING  N  N  73  
X6J  C29  H29  SING  N  N  74  
X6J  C31  H30  SING  N  N  75  
X6J  C32  H31  SING  N  N  76  
X6J  C32  H32  SING  N  N  77  
X6J  C34  H33  SING  N  N  78  
X6J  C35  H34  SING  N  N  79  
X6J  C36  H35  SING  N  N  80  
X6J  C38  H36  SING  N  N  81  
X6J  C39  H37  SING  N  N  82  
X6J  C40  H38  SING  N  N  83  
X6J  C41  H39  SING  N  N  84  
X6J  N08  H40  SING  N  N  85  
X6J  N22  H41  SING  N  N  86  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
X6J  SMILES            ACDLabs               12.01  "C(C(Cc1cccc2ccccc12)NC(OC(C)(C)C)=O)SC(C(=O)NCCCc3cccnc3)Cc4ccccc4"  
X6J  InChI             InChI                 1.03   "InChI=1S/C35H41N3O3S/c1-35(2,3)41-34(40)38-30(23-29-18-9-17-28-16-7-8-19-31(28)29)25-42-32(22-26-12-5-4-6-13-26)33(39)37-21-11-15-27-14-10-20-36-24-27/h4-10,12-14,16-20,24,30,32H,11,15,21-23,25H2,1-3H3,(H,37,39)(H,38,40)/t30-,32+/m1/s1"  
X6J  InChIKey          InChI                 1.03   XDOKSTKEPWQDPB-BHYZAODMSA-N  
X6J  SMILES_CANONICAL  CACTVS                3.385  "CC(C)(C)OC(=O)N[C@@H](CS[C@@H](Cc1ccccc1)C(=O)NCCCc2cccnc2)Cc3cccc4ccccc34"  
X6J  SMILES            CACTVS                3.385  "CC(C)(C)OC(=O)N[CH](CS[CH](Cc1ccccc1)C(=O)NCCCc2cccnc2)Cc3cccc4ccccc34"  
X6J  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)(C)OC(=O)N[C@H](Cc1cccc2c1cccc2)CS[C@@H](Cc3ccccc3)C(=O)NCCCc4cccnc4"  
X6J  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)(C)OC(=O)NC(Cc1cccc2c1cccc2)CSC(Cc3ccccc3)C(=O)NCCCc4cccnc4"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
X6J  "SYSTEMATIC NAME"  ACDLabs               12.01  "tert-butyl [(2R)-1-(naphthalen-1-yl)-3-{[(2S)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate"  
X6J  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "~{tert}-butyl ~{N}-[(2~{R})-1-naphthalen-1-yl-3-[(2~{S})-1-oxidanylidene-3-phenyl-1-(3-pyridin-3-ylpropylamino)propan-2-yl]sulfanyl-propan-2-yl]carbamate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
X6J  "Create component"  2020-12-01  RCSB  
X6J  "Initial release"   2021-01-20  RCSB  
##
