data_W6J
#

_chem_comp.id                                   W6J
_chem_comp.name                                 "1-(pyridin-2-yl)-1,4-diazepane"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H15 N3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-09-29
_chem_comp.pdbx_modified_date                   2020-12-11
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       177.246
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    W6J
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5RUV
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
W6J  C10   C1   C  0  1  N  N  N  -38.569  -0.893  17.949   2.327   1.464  -0.030  C10   W6J   1  
W6J  N12   N1   N  0  1  Y  N  N  -35.465   0.807  17.486  -1.602  -1.090   0.258  N12   W6J   2  
W6J  C13   C2   C  0  1  Y  N  N  -34.512   1.506  17.910  -2.903  -1.210   0.444  C13   W6J   3  
W6J  C01   C3   C  0  1  Y  N  N  -34.467   2.884  17.668  -3.754  -0.152   0.194  C01   W6J   4  
W6J  C02   C4   C  0  1  Y  N  N  -35.487   3.454  16.913  -3.229   1.051  -0.258  C02   W6J   5  
W6J  C03   C5   C  0  1  Y  N  N  -36.489   2.638  16.510  -1.861   1.147  -0.443  C03   W6J   6  
W6J  C04   C6   C  0  1  Y  N  N  -36.471   1.317  16.795  -1.063   0.040  -0.172  C04   W6J   7  
W6J  C06   C7   C  0  1  N  N  N  -38.569   1.003  15.511   0.970  -1.158  -0.010  C06   W6J   8  
W6J  C07   C8   C  0  1  N  N  N  -39.740   1.494  16.349   2.256  -1.260  -0.790  C07   W6J   9  
W6J  C08   C9   C  0  1  N  N  N  -40.587   0.392  17.032   3.461  -0.711   0.000  C08   W6J  10  
W6J  C11   C10  C  0  1  N  N  N  -37.619  -0.920  16.824   0.842   1.233   0.315  C11   W6J  11  
W6J  N05   N2   N  0  1  N  N  N  -37.562   0.425  16.290   0.313   0.122  -0.353  N05   W6J  12  
W6J  N09   N3   N  0  1  N  N  N  -39.954  -0.702  17.724   3.135   0.536   0.729  N09   W6J  13  
W6J  H101  H1   H  0  0  N  N  N  -38.466  -1.856  18.470   2.484   1.297  -1.096  H101  W6J  14  
W6J  H102  H2   H  0  0  N  N  N  -38.244  -0.080  18.614   2.606   2.486   0.225  H102  W6J  15  
W6J  H131  H3   H  0  0  N  N  N  -33.716   1.037  18.469  -3.307  -2.148   0.796  H131  W6J  16  
W6J  H011  H4   H  0  0  N  N  N  -33.661   3.489  18.057  -4.818  -0.259   0.348  H011  W6J  17  
W6J  H021  H5   H  0  0  N  N  N  -35.480   4.504  16.659  -3.874   1.894  -0.461  H021  W6J  18  
W6J  H031  H6   H  0  0  N  N  N  -37.317   3.049  15.951  -1.419   2.068  -0.794  H031  W6J  19  
W6J  H062  H7   H  0  0  N  N  N  -38.145   1.857  14.962   0.315  -1.988  -0.274  H062  W6J  20  
W6J  H061  H8   H  0  0  N  N  N  -38.937   0.253  14.795   1.186  -1.183   1.058  H061  W6J  21  
W6J  H072  H9   H  0  0  N  N  N  -39.340   2.150  17.137   2.440  -2.306  -1.034  H072  W6J  22  
W6J  H071  H10  H  0  0  N  N  N  -40.406   2.073  15.692   2.155  -0.694  -1.716  H071  W6J  23  
W6J  H081  H11  H  0  0  N  N  N  -41.228   0.900  17.768   3.785  -1.464   0.718  H081  W6J  24  
W6J  H082  H12  H  0  0  N  N  N  -41.214  -0.055  16.246   4.278  -0.513  -0.694  H082  W6J  25  
W6J  H112  H13  H  0  0  N  N  N  -37.968  -1.620  16.050   0.748   1.077   1.390  H112  W6J  26  
W6J  H111  H14  H  0  0  N  N  N  -36.624  -1.230  17.176   0.271   2.118   0.034  H111  W6J  27  
W6J  H1    H15  H  0  1  N  N  N  -40.363  -0.698  18.637   2.710   0.333   1.622  H1    W6J  28  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
W6J  C06  N05   SING  N  N   1  
W6J  C06  C07   SING  N  N   2  
W6J  N05  C04   SING  N  N   3  
W6J  N05  C11   SING  N  N   4  
W6J  C07  C08   SING  N  N   5  
W6J  C03  C04   DOUB  Y  N   6  
W6J  C03  C02   SING  Y  N   7  
W6J  C04  N12   SING  Y  N   8  
W6J  C11  C10   SING  N  N   9  
W6J  C02  C01   DOUB  Y  N  10  
W6J  C08  N09   SING  N  N  11  
W6J  N12  C13   DOUB  Y  N  12  
W6J  C01  C13   SING  Y  N  13  
W6J  N09  C10   SING  N  N  14  
W6J  C10  H101  SING  N  N  15  
W6J  C10  H102  SING  N  N  16  
W6J  C13  H131  SING  N  N  17  
W6J  C01  H011  SING  N  N  18  
W6J  C02  H021  SING  N  N  19  
W6J  C03  H031  SING  N  N  20  
W6J  C06  H062  SING  N  N  21  
W6J  C06  H061  SING  N  N  22  
W6J  C07  H072  SING  N  N  23  
W6J  C07  H071  SING  N  N  24  
W6J  C08  H081  SING  N  N  25  
W6J  C08  H082  SING  N  N  26  
W6J  C11  H112  SING  N  N  27  
W6J  C11  H111  SING  N  N  28  
W6J  N09  H1    SING  N  N  29  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
W6J  SMILES            ACDLabs               12.01  "C2CN(c1ncccc1)CCCN2"  
W6J  InChI             InChI                 1.03   "InChI=1S/C10H15N3/c1-2-6-12-10(4-1)13-8-3-5-11-7-9-13/h1-2,4,6,11H,3,5,7-9H2"  
W6J  InChIKey          InChI                 1.03   YIVVBOYHOANILT-UHFFFAOYSA-N  
W6J  SMILES_CANONICAL  CACTVS                3.385  "C1CNCCN(C1)c2ccccn2"  
W6J  SMILES            CACTVS                3.385  "C1CNCCN(C1)c2ccccn2"  
W6J  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccnc(c1)N2CCCNCC2"  
W6J  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccnc(c1)N2CCCNCC2"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
W6J  "SYSTEMATIC NAME"  ACDLabs               12.01  "1-(pyridin-2-yl)-1,4-diazepane"  
W6J  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "1-pyridin-2-yl-1,4-diazepane"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
W6J  "Create component"  2020-09-29  RCSB  
W6J  "Initial release"   2020-12-16  RCSB  
##
