data_VPJ
#

_chem_comp.id                                   VPJ
_chem_comp.name                                 "N~2~-(4-fluorophenyl)-6-{[(5-{[(oxolan-2-yl)methyl]amino}-1,3,4-thiadiazol-2-yl)sulfanyl]methyl}-1,3,5-triazine-2,4-diamine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C17 H19 F N8 O S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-09-01
_chem_comp.pdbx_modified_date                   2021-07-09
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       434.514
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VPJ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7JYQ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VPJ  C10  C1   C  0  1  Y  N  N  -12.083  11.239  22.789   -4.661  -0.264  -0.404  C10  VPJ   1  
VPJ  C17  C2   C  0  1  Y  N  N  -14.084  15.795  19.636    6.705   0.169   0.810  C17  VPJ   2  
VPJ  C21  C3   C  0  1  Y  N  N  -13.722  14.165  21.826    8.170   2.099  -0.534  C21  VPJ   3  
VPJ  C22  C4   C  0  1  Y  N  N  -12.625  14.773  21.238    6.793   2.198  -0.477  C22  VPJ   4  
VPJ  C02  C5   C  0  1  Y  N  N   -8.180  16.308  18.666    3.711  -2.101   0.122  C02  VPJ   5  
VPJ  C04  C6   C  0  1  Y  N  N   -8.566  14.484  20.006    1.830  -0.820   0.443  C04  VPJ   6  
VPJ  C05  C7   C  0  1  N  N  N   -8.000  13.259  20.721    0.338  -0.717   0.631  C05  VPJ   7  
VPJ  C07  C8   C  0  1  Y  N  N  -10.345  11.556  20.968   -2.175  -0.446  -0.572  C07  VPJ   8  
VPJ  C14  C9   C  0  1  Y  N  N  -10.303  15.861  19.442    3.888   0.187   0.266  C14  VPJ   9  
VPJ  C16  C10  C  0  1  Y  N  N  -12.804  15.588  20.130    6.056   1.233   0.196  C16  VPJ  10  
VPJ  C18  C11  C  0  1  Y  N  N  -15.178  15.185  20.220    8.081   0.074   0.750  C18  VPJ  11  
VPJ  C19  C12  C  0  1  Y  N  N  -14.991  14.371  21.323    8.814   1.038   0.079  C19  VPJ  12  
VPJ  F20  F1   F  0  1  N  N  N  -16.066  13.767  21.911   10.161   0.942   0.021  F20  VPJ  13  
VPJ  N01  N1   N  0  1  N  N  N   -7.231  17.112  17.905    4.299  -3.340  -0.033  N01  VPJ  14  
VPJ  N03  N2   N  0  1  Y  N  N   -7.741  15.234  19.298    2.394  -2.005   0.289  N03  VPJ  15  
VPJ  N08  N3   N  0  1  Y  N  N  -11.582  11.316  20.549   -2.659  -0.481   0.630  N08  VPJ  16  
VPJ  N09  N4   N  0  1  Y  N  N  -12.515  11.139  21.535   -4.030  -0.379   0.723  N09  VPJ  17  
VPJ  N11  N5   N  0  1  N  N  N  -12.868  11.101  24.005   -6.038  -0.148  -0.547  N11  VPJ  18  
VPJ  N13  N6   N  0  1  Y  N  N   -9.855  14.789  20.077    2.570   0.274   0.433  N13  VPJ  19  
VPJ  N15  N7   N  0  1  N  N  N  -11.699  16.262  19.469    4.661   1.331   0.255  N15  VPJ  20  
VPJ  N23  N8   N  0  1  Y  N  N   -9.463  16.622  18.746    4.459  -1.003   0.111  N23  VPJ  21  
VPJ  S06  S1   S  0  1  N  N  N   -8.846  11.831  19.986   -0.465  -0.553  -0.987  S06  VPJ  22  
VPJ  S12  S2   S  0  1  Y  N  N  -10.385  11.580  22.690   -3.495  -0.272  -1.723  S12  VPJ  23  
VPJ  H1   H1   H  0  1  N  N  N  -14.227  16.442  18.783    6.133  -0.580   1.337  H1   VPJ  24  
VPJ  H2   H2   H  0  1  N  N  N  -13.583  13.525  22.685    8.743   2.850  -1.057  H2   VPJ  25  
VPJ  H3   H3   H  0  1  N  N  N  -11.635  14.613  21.640    6.291   3.026  -0.954  H3   VPJ  26  
VPJ  H4   H4   H  0  1  N  N  N   -8.207  13.314  21.800   -0.029  -1.614   1.130  H4   VPJ  27  
VPJ  H5   H5   H  0  1  N  N  N   -6.914  13.187  20.559    0.109   0.157   1.241  H5   VPJ  28  
VPJ  H6   H6   H  0  1  N  N  N  -16.169  15.342  19.820    8.586  -0.753   1.228  H6   VPJ  29  
VPJ  H7   H7   H  0  1  N  N  N   -7.708  17.887  17.489    5.260  -3.409  -0.150  H7   VPJ  30  
VPJ  H8   H8   H  0  1  N  N  N   -6.515  17.450  18.516    3.753  -4.141  -0.024  H8   VPJ  31  
VPJ  H9   H9   H  0  1  N  N  N  -12.475  11.055  24.923   -6.429  -0.066  -1.431  H9   VPJ  32  
VPJ  H11  H11  H  0  1  N  N  N  -11.927  17.101  18.974    4.237   2.203   0.288  H11  VPJ  33  
VPJ  C1   C13  C  0  1  N  N  N        ?       ?       ?   -6.901  -0.149   0.637  C1   VPJ  34  
VPJ  C2   C14  C  0  1  N  N  N        ?       ?       ?   -8.361  -0.009   0.205  C2   VPJ  35  
VPJ  C3   C15  C  0  1  N  N  N        ?       ?       ?   -9.277  -0.009   1.444  C3   VPJ  36  
VPJ  C4   C16  C  0  1  N  N  N        ?       ?       ?  -10.030   1.341   1.360  C4   VPJ  37  
VPJ  C5   C17  C  0  1  N  N  N        ?       ?       ?   -9.884   1.701  -0.141  C5   VPJ  38  
VPJ  O1   O1   O  0  1  N  N  N        ?       ?       ?   -8.554   1.246  -0.469  O1   VPJ  39  
VPJ  H10  H10  H  0  1  N  N  N        ?       ?       ?   -6.771  -1.085   1.180  H10  VPJ  40  
VPJ  H12  H12  H  0  1  N  N  N        ?       ?       ?   -6.632   0.686   1.283  H12  VPJ  41  
VPJ  H13  H13  H  0  1  N  N  N        ?       ?       ?   -8.632  -0.832  -0.457  H13  VPJ  42  
VPJ  H14  H14  H  0  1  N  N  N        ?       ?       ?   -9.980  -0.841   1.398  H14  VPJ  43  
VPJ  H15  H15  H  0  1  N  N  N        ?       ?       ?   -8.684  -0.060   2.357  H15  VPJ  44  
VPJ  H16  H16  H  0  1  N  N  N        ?       ?       ?  -11.079   1.219   1.631  H16  VPJ  45  
VPJ  H17  H17  H  0  1  N  N  N        ?       ?       ?   -9.552   2.092   1.988  H17  VPJ  46  
VPJ  H18  H18  H  0  1  N  N  N        ?       ?       ?  -10.628   1.172  -0.736  H18  VPJ  47  
VPJ  H19  H19  H  0  1  N  N  N        ?       ?       ?   -9.969   2.778  -0.287  H19  VPJ  48  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VPJ  N01  C02  SING  N  N   1  
VPJ  C02  N23  DOUB  Y  N   2  
VPJ  C02  N03  SING  Y  N   3  
VPJ  N23  C14  SING  Y  N   4  
VPJ  N03  C04  DOUB  Y  N   5  
VPJ  C14  N15  SING  N  N   6  
VPJ  C14  N13  DOUB  Y  N   7  
VPJ  N15  C16  SING  N  N   8  
VPJ  C17  C16  DOUB  Y  N   9  
VPJ  C17  C18  SING  Y  N  10  
VPJ  S06  C05  SING  N  N  11  
VPJ  S06  C07  SING  N  N  12  
VPJ  C04  N13  SING  Y  N  13  
VPJ  C04  C05  SING  N  N  14  
VPJ  C16  C22  SING  Y  N  15  
VPJ  C18  C19  DOUB  Y  N  16  
VPJ  N08  C07  DOUB  Y  N  17  
VPJ  N08  N09  SING  Y  N  18  
VPJ  C07  S12  SING  Y  N  19  
VPJ  C22  C21  DOUB  Y  N  20  
VPJ  C19  C21  SING  Y  N  21  
VPJ  C19  F20  SING  N  N  22  
VPJ  N09  C10  DOUB  Y  N  23  
VPJ  S12  C10  SING  Y  N  24  
VPJ  C10  N11  SING  N  N  25  
VPJ  C17  H1   SING  N  N  26  
VPJ  C21  H2   SING  N  N  27  
VPJ  C22  H3   SING  N  N  28  
VPJ  C05  H4   SING  N  N  29  
VPJ  C05  H5   SING  N  N  30  
VPJ  C18  H6   SING  N  N  31  
VPJ  N01  H7   SING  N  N  32  
VPJ  N01  H8   SING  N  N  33  
VPJ  N11  H9   SING  N  N  34  
VPJ  N15  H11  SING  N  N  35  
VPJ  N11  C1   SING  N  N  36  
VPJ  C1   C2   SING  N  N  37  
VPJ  C2   C3   SING  N  N  38  
VPJ  C3   C4   SING  N  N  39  
VPJ  C4   C5   SING  N  N  40  
VPJ  C5   O1   SING  N  N  41  
VPJ  O1   C2   SING  N  N  42  
VPJ  C1   H10  SING  N  N  43  
VPJ  C1   H12  SING  N  N  44  
VPJ  C2   H13  SING  N  N  45  
VPJ  C3   H14  SING  N  N  46  
VPJ  C3   H15  SING  N  N  47  
VPJ  C4   H16  SING  N  N  48  
VPJ  C4   H17  SING  N  N  49  
VPJ  C5   H18  SING  N  N  50  
VPJ  C5   H19  SING  N  N  51  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VPJ  SMILES            ACDLabs               12.01  "c2(NCC1CCCO1)nnc(s2)SCc4nc(Nc3ccc(cc3)F)nc(n4)N"  
VPJ  InChI             InChI                 1.03   "InChI=1S/C17H19FN8OS2/c18-10-3-5-11(6-4-10)21-15-23-13(22-14(19)24-15)9-28-17-26-25-16(29-17)20-8-12-2-1-7-27-12/h3-6,12H,1-2,7-9H2,(H,20,25)(H3,19,21,22,23,24)"  
VPJ  InChIKey          InChI                 1.03   YMCUEXLWILKXTO-UHFFFAOYSA-N  
VPJ  SMILES_CANONICAL  CACTVS                3.385  "Nc1nc(CSc2sc(NCC3CCCO3)nn2)nc(Nc4ccc(F)cc4)n1"  
VPJ  SMILES            CACTVS                3.385  "Nc1nc(CSc2sc(NCC3CCCO3)nn2)nc(Nc4ccc(F)cc4)n1"  
VPJ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(ccc1Nc2nc(nc(n2)N)CSc3nnc(s3)NCC4CCCO4)F"  
VPJ  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(ccc1Nc2nc(nc(n2)N)CSc3nnc(s3)NCC4CCCO4)F"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VPJ  "SYSTEMATIC NAME"  ACDLabs               12.01  "N~2~-(4-fluorophenyl)-6-{[(5-{[(oxolan-2-yl)methyl]amino}-1,3,4-thiadiazol-2-yl)sulfanyl]methyl}-1,3,5-triazine-2,4-diamine"  
VPJ  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "~{N}2-(4-fluorophenyl)-6-[[5-(oxolan-2-ylmethylamino)-1,3,4-thiadiazol-2-yl]sulfanylmethyl]-1,3,5-triazine-2,4-diamine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VPJ  "Create component"  2020-09-01  RCSB  
VPJ  "Initial release"   2021-07-14  RCSB  
##
