data_V4J
#

_chem_comp.id                                   V4J
_chem_comp.name                                 "2-{[(4R)-4-hydroxyhexyl]oxy}ethyl 5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H32 N2 O5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-06-25
_chem_comp.pdbx_modified_date                   2022-01-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       388.522
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    V4J
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6XJQ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V4J  C16  C1   C  0  1  N  N  N   2.624  13.397   8.529    2.696   0.466  -1.006  C16  V4J   1  
V4J  C3   C2   C  0  1  N  N  N  -2.176  15.861   8.483   -9.762  -1.997   0.154  C3   V4J   2  
V4J  C20  C3   C  0  1  N  N  R   6.028  16.403   7.476    7.301  -1.351  -0.534  C20  V4J   3  
V4J  C21  C4   C  0  1  N  N  N   6.595  14.916   5.791    7.151  -0.303   1.497  C21  V4J   4  
V4J  C22  C5   C  0  1  N  N  N  -2.880  12.480   8.284   -6.446  -0.052   0.330  C22  V4J   5  
V4J  C23  C6   C  0  1  N  N  S   5.209  15.087   7.629    6.524  -0.038  -0.690  C23  V4J   6  
V4J  S1   S1   S  0  1  N  N  N   3.736  16.654   6.296    4.733  -1.986  -0.629  S1   V4J   7  
V4J  C15  C7   C  0  1  N  N  N  -2.006  13.526   8.976   -7.892  -0.355  -0.069  C15  V4J   8  
V4J  C14  C8   C  0  1  N  N  N  -3.664  15.806   8.161  -10.182  -3.331   0.775  C14  V4J   9  
V4J  O14  O1   O  0  1  N  N  N  -0.665  10.698   9.749   -1.942   2.131  -0.463  O14  V4J  10  
V4J  C13  C9   C  0  1  N  N  N   0.379  10.561   8.904   -0.632   2.168  -0.175  C13  V4J  11  
V4J  C12  C10  C  0  1  N  N  N  -1.324   9.445   9.944   -2.793   3.096   0.210  C12  V4J  12  
V4J  C11  C11  C  0  1  N  N  N   0.753  11.813   8.120    0.313   1.197  -0.835  C11  V4J  13  
V4J  C10  C12  C  0  1  N  N  N  -2.794   9.705  10.292   -4.242   2.901  -0.242  C10  V4J  14  
V4J  C9   C13  C  0  1  N  N  N   2.259  11.972   8.141    1.737   1.452  -0.336  C9   V4J  15  
V4J  C7   C14  C  0  1  N  N  N  -3.644  11.706   9.357   -6.057   1.337  -0.182  C7   V4J  16  
V4J  C1   C15  C  0  1  N  N  R  -1.498  14.604   8.010   -8.281  -1.744   0.443  C1   V4J  17  
V4J  C17  C16  C  0  1  N  N  N   2.888  14.201   7.268    4.120   0.721  -0.507  C17  V4J  18  
V4J  C18  C17  C  0  1  N  N  S   3.725  15.441   7.586    5.079  -0.265  -1.177  C18  V4J  19  
V4J  C19  C18  C  0  1  N  N  N   5.050  17.537   7.086    6.451  -2.583  -0.902  C19  V4J  20  
V4J  N4   N1   N  0  1  N  N  N   6.889  16.111   6.304    7.639  -1.397   0.897  N4   V4J  21  
V4J  N5   N2   N  0  1  N  N  N   5.641  14.272   6.468    6.501   0.526   0.669  N5   V4J  22  
V4J  O15  O2   O  0  1  N  N  N   1.009   9.520   8.771   -0.209   2.981   0.613  O15  V4J  23  
V4J  O22  O3   O  0  1  N  N  N   7.152  14.456   4.792    7.285  -0.082   2.685  O22  V4J  24  
V4J  O5   O4   O  0  1  N  N  N  -0.100  14.782   8.188   -7.491  -2.734  -0.218  O5   V4J  25  
V4J  O8   O5   O  0  1  N  N  N  -3.457  10.300   9.164   -4.707   1.621   0.190  O8   V4J  26  
V4J  H1   H1   H  0  1  N  N  N   3.527  13.388   9.157    2.401  -0.553  -0.757  H1   V4J  27  
V4J  H2   H2   H  0  1  N  N  N   1.793  13.851   9.089    2.660   0.602  -2.087  H2   V4J  28  
V4J  H3   H3   H  0  1  N  N  N  -2.042  15.959   9.570   -9.921  -2.032  -0.924  H3   V4J  29  
V4J  H4   H4   H  0  1  N  N  N  -1.726  16.729   7.978  -10.359  -1.192   0.583  H4   V4J  30  
V4J  H5   H5   H  0  1  N  N  N   6.600  16.642   8.385    8.209  -1.326  -1.136  H5   V4J  31  
V4J  H6   H6   H  0  1  N  N  N  -3.591  12.978   7.608   -6.356  -0.077   1.416  H6   V4J  32  
V4J  H7   H7   H  0  1  N  N  N  -2.247  11.790   7.707   -5.784  -0.799  -0.107  H7   V4J  33  
V4J  H8   H8   H  0  1  N  N  N   5.461  14.592   8.578    7.050   0.633  -1.369  H8   V4J  34  
V4J  H9   H9   H  0  1  N  N  N  -1.139  13.019   9.425   -8.554   0.392   0.368  H9   V4J  35  
V4J  H10  H10  H  0  1  N  N  N  -2.597  14.012   9.766   -7.982  -0.330  -1.155  H10  V4J  36  
V4J  H11  H11  H  0  1  N  N  N  -4.150  16.729   8.511   -9.585  -4.135   0.345  H11  V4J  37  
V4J  H12  H12  H  0  1  N  N  N  -3.800  15.709   7.074  -10.023  -3.296   1.852  H12  V4J  38  
V4J  H13  H13  H  0  1  N  N  N  -4.116  14.940   8.666  -11.237  -3.511   0.569  H13  V4J  39  
V4J  H14  H14  H  0  1  N  N  N  -1.263   8.848   9.022   -2.726   2.950   1.288  H14  V4J  40  
V4J  H15  H15  H  0  1  N  N  N  -0.841   8.898  10.767   -2.467   4.105  -0.041  H15  V4J  41  
V4J  H16  H16  H  0  1  N  N  N   0.282  12.693   8.583    0.018   0.178  -0.586  H16  V4J  42  
V4J  H17  H17  H  0  1  N  N  N   0.406  11.715   7.081    0.277   1.333  -1.916  H17  V4J  43  
V4J  H18  H18  H  0  1  N  N  N  -2.852  10.388  11.153   -4.866   3.680   0.194  H18  V4J  44  
V4J  H19  H19  H  0  1  N  N  N  -3.284   8.753  10.545   -4.294   2.958  -1.329  H19  V4J  45  
V4J  H20  H20  H  0  1  N  N  N   2.689  11.273   8.873    1.773   1.317   0.745  H20  V4J  46  
V4J  H21  H21  H  0  1  N  N  N   2.663  11.751   7.142    2.032   2.472  -0.584  H21  V4J  47  
V4J  H22  H22  H  0  1  N  N  N  -3.269  11.992  10.351   -6.147   1.362  -1.268  H22  V4J  48  
V4J  H23  H23  H  0  1  N  N  N  -4.715  11.945   9.287   -6.719   2.084   0.255  H23  V4J  49  
V4J  H24  H24  H  0  1  N  N  N  -1.770  14.365   6.971   -8.106  -1.797   1.517  H24  V4J  50  
V4J  H25  H25  H  0  1  N  N  N   1.928  14.515   6.832    4.415   1.740  -0.756  H25  V4J  51  
V4J  H26  H26  H  0  1  N  N  N   3.431  13.573   6.546    4.156   0.586   0.574  H26  V4J  52  
V4J  H27  H27  H  0  1  N  N  N   3.396  15.924   8.518    5.017  -0.185  -2.262  H27  V4J  53  
V4J  H28  H28  H  0  1  N  N  N   5.523  18.249   6.394    6.602  -2.860  -1.945  H28  V4J  54  
V4J  H29  H29  H  0  1  N  N  N   4.689  18.074   7.975    6.678  -3.421  -0.242  H29  V4J  55  
V4J  H30  H30  H  0  1  N  N  N   7.593  16.726   5.948    8.135  -2.106   1.336  H30  V4J  56  
V4J  H31  H31  H  0  1  N  N  N   5.273  13.374   6.228    6.083   1.363   0.924  H31  V4J  57  
V4J  H32  H32  H  0  1  N  N  N   0.358  14.002   7.897   -7.596  -2.744  -1.179  H32  V4J  58  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V4J  O22  C21  DOUB  N  N   1  
V4J  C21  N4   SING  N  N   2  
V4J  C21  N5   SING  N  N   3  
V4J  S1   C19  SING  N  N   4  
V4J  S1   C18  SING  N  N   5  
V4J  N4   C20  SING  N  N   6  
V4J  N5   C23  SING  N  N   7  
V4J  C19  C20  SING  N  N   8  
V4J  C17  C18  SING  N  N   9  
V4J  C17  C16  SING  N  N  10  
V4J  C20  C23  SING  N  N  11  
V4J  C18  C23  SING  N  N  12  
V4J  C1   O5   SING  N  N  13  
V4J  C1   C3   SING  N  N  14  
V4J  C1   C15  SING  N  N  15  
V4J  C11  C9   SING  N  N  16  
V4J  C11  C13  SING  N  N  17  
V4J  C9   C16  SING  N  N  18  
V4J  C14  C3   SING  N  N  19  
V4J  C22  C15  SING  N  N  20  
V4J  C22  C7   SING  N  N  21  
V4J  O15  C13  DOUB  N  N  22  
V4J  C13  O14  SING  N  N  23  
V4J  O8   C7   SING  N  N  24  
V4J  O8   C10  SING  N  N  25  
V4J  O14  C12  SING  N  N  26  
V4J  C12  C10  SING  N  N  27  
V4J  C16  H1   SING  N  N  28  
V4J  C16  H2   SING  N  N  29  
V4J  C3   H3   SING  N  N  30  
V4J  C3   H4   SING  N  N  31  
V4J  C20  H5   SING  N  N  32  
V4J  C22  H6   SING  N  N  33  
V4J  C22  H7   SING  N  N  34  
V4J  C23  H8   SING  N  N  35  
V4J  C15  H9   SING  N  N  36  
V4J  C15  H10  SING  N  N  37  
V4J  C14  H11  SING  N  N  38  
V4J  C14  H12  SING  N  N  39  
V4J  C14  H13  SING  N  N  40  
V4J  C12  H14  SING  N  N  41  
V4J  C12  H15  SING  N  N  42  
V4J  C11  H16  SING  N  N  43  
V4J  C11  H17  SING  N  N  44  
V4J  C10  H18  SING  N  N  45  
V4J  C10  H19  SING  N  N  46  
V4J  C9   H20  SING  N  N  47  
V4J  C9   H21  SING  N  N  48  
V4J  C7   H22  SING  N  N  49  
V4J  C7   H23  SING  N  N  50  
V4J  C1   H24  SING  N  N  51  
V4J  C17  H25  SING  N  N  52  
V4J  C17  H26  SING  N  N  53  
V4J  C18  H27  SING  N  N  54  
V4J  C19  H28  SING  N  N  55  
V4J  C19  H29  SING  N  N  56  
V4J  N4   H30  SING  N  N  57  
V4J  N5   H31  SING  N  N  58  
V4J  O5   H32  SING  N  N  59  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V4J  SMILES            ACDLabs               12.01  "C(CCC(OCCOCCCC(CC)O)=O)CC1C2C(CS1)NC(N2)=O"  
V4J  InChI             InChI                 1.03   "InChI=1S/C18H32N2O5S/c1-2-13(21)6-5-9-24-10-11-25-16(22)8-4-3-7-15-17-14(12-26-15)19-18(23)20-17/h13-15,17,21H,2-12H2,1H3,(H2,19,20,23)/t13-,14+,15+,17+/m1/s1"  
V4J  InChIKey          InChI                 1.03   XPLYDBRQTYFSEO-AESZEHBQSA-N  
V4J  SMILES_CANONICAL  CACTVS                3.385  "CC[C@@H](O)CCCOCCOC(=O)CCCC[C@@H]1SC[C@@H]2NC(=O)N[C@H]12"  
V4J  SMILES            CACTVS                3.385  "CC[CH](O)CCCOCCOC(=O)CCCC[CH]1SC[CH]2NC(=O)N[CH]12"  
V4J  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC[C@H](CCCOCCOC(=O)CCCC[C@H]1[C@@H]2[C@H](CS1)NC(=O)N2)O"  
V4J  SMILES            "OpenEye OEToolkits"  2.0.7  "CCC(CCCOCCOC(=O)CCCCC1C2C(CS1)NC(=O)N2)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
V4J  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-{[(4R)-4-hydroxyhexyl]oxy}ethyl 5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoate"  
V4J  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "2-[(4~{R})-4-oxidanylhexoxy]ethyl 5-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]pentanoate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V4J  "Create component"  2020-06-25  RCSB  
V4J  "Initial release"   2022-01-19  RCSB  
##
