data_TXJ
# 
_chem_comp.id                                    TXJ 
_chem_comp.name                                  "[(2S)-1-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-propan-2-yl]oxymethyl-[oxidanyl(phosphonooxy)phosphoryl]oxy-phosphinic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C8 H16 N3 O12 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-05-10 
_chem_comp.pdbx_modified_date                    2024-05-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        439.147 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     TXJ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8J8G 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
TXJ P     P1  P 0 1 N N N N N N 170.036 144.005 170.889 0.238  -0.506 0.258  P     TXJ 1  
TXJ N1    N1  N 0 1 N N N N N N 168.512 148.979 170.111 4.092  0.349  0.017  N1    TXJ 2  
TXJ C2    C1  C 0 1 N N N N N N 169.283 150.076 170.093 3.839  1.159  -1.027 C2    TXJ 3  
TXJ O2    O1  O 0 1 N N N N N N 169.843 150.411 169.051 3.883  0.708  -2.160 O2    TXJ 4  
TXJ N3    N2  N 0 1 N N N N N N 169.467 150.836 171.253 3.540  2.444  -0.844 N3    TXJ 5  
TXJ C4    C2  C 0 1 N N N N N N 168.835 150.458 172.440 3.485  2.959  0.377  C4    TXJ 6  
TXJ N4    N3  N 0 1 N N N N N N 169.004 151.174 173.547 3.176  4.287  0.554  N4    TXJ 7  
TXJ C5    C3  C 0 1 N N N N N N 168.027 149.329 172.455 3.746  2.137  1.493  C5    TXJ 8  
TXJ C6    C4  C 0 1 N N N N N N 167.862 148.592 171.290 4.047  0.832  1.290  C6    TXJ 9  
TXJ "C1'" C5  C 0 1 N N N N N N 168.317 148.203 168.864 4.411  -1.062 -0.216 "C1'" TXJ 10 
TXJ "C2'" C6  C 0 1 N N S N N N 168.963 146.809 168.789 3.120  -1.883 -0.220 "C2'" TXJ 11 
TXJ "C3'" C7  C 0 1 N N N N N N 170.495 146.910 168.837 3.453  -3.356 -0.463 "C3'" TXJ 12 
TXJ "O3'" O2  O 0 1 N N N N N N 170.925 147.523 170.049 4.399  -3.798 0.513  "O3'" TXJ 13 
TXJ "C4'" C8  C 0 1 N N N N N N 169.046 144.650 169.546 1.052  -1.964 0.989  "C4'" TXJ 14 
TXJ "O4'" O3  O 0 1 N N N N N N 168.487 145.936 169.828 2.463  -1.745 1.041  "O4'" TXJ 15 
TXJ OP1   O4  O 0 1 N N N N N N 171.040 143.113 170.287 0.455  0.670  1.130  OP1   TXJ 16 
TXJ O6    O5  O 0 1 N N N N N N 170.476 145.113 171.760 0.862  -0.217 -1.198 O6    TXJ 17 
TXJ O1B   O6  O 0 1 N N N N N N 169.273 143.251 174.165 -3.957 -0.526 0.157  O1B   TXJ 18 
TXJ O1G   O7  O 0 1 N N N N N N 170.509 141.233 173.997 -5.451 1.462  0.589  O1G   TXJ 19 
TXJ O2B   O8  O 0 1 N N N N N N 167.982 145.012 172.934 -2.439 1.483  -0.012 O2B   TXJ 20 
TXJ O2G   O9  O 0 1 N N N N N N 170.034 142.235 176.207 -6.204 -0.189 -1.166 O2G   TXJ 21 
TXJ O3A   O10 O 0 1 N N N N N N 169.025 143.065 171.721 -1.342 -0.786 0.119  O3A   TXJ 22 
TXJ O3B   O11 O 0 1 N N N N N N 167.002 142.672 173.144 -2.617 -0.005 -2.043 O3B   TXJ 23 
TXJ O3G   O12 O 0 1 N N N N N N 168.211 141.152 174.915 -6.263 -0.789 1.393  O3G   TXJ 24 
TXJ PB    P2  P 0 1 N N N N N N 168.181 143.549 172.999 -2.586 0.072  -0.435 PB    TXJ 25 
TXJ PG    P3  P 0 1 N N N N N N 169.505 141.843 174.895 -5.469 0.021  0.251  PG    TXJ 26 
TXJ H1    H1  H 0 1 N N N N N N 169.586 151.987 173.533 2.997  4.850  -0.216 H1    TXJ 27 
TXJ H2    H2  H 0 1 N N N N N N 168.549 150.899 174.394 3.136  4.661  1.448  H2    TXJ 28 
TXJ H3    H3  H 0 1 N N N N N N 167.531 149.027 173.365 3.705  2.541  2.493  H3    TXJ 29 
TXJ H4    H4  H 0 1 N N N N N N 167.230 147.716 171.293 4.250  0.183  2.128  H4    TXJ 30 
TXJ H5    H5  H 0 1 N N N N N N 168.726 148.801 168.036 4.912  -1.168 -1.178 H5    TXJ 31 
TXJ H6    H6  H 0 1 N N N N N N 167.234 148.073 168.722 5.067  -1.422 0.577  H6    TXJ 32 
TXJ H7    H7  H 0 1 N N N N N N 168.693 146.375 167.815 2.464  -1.523 -1.013 H7    TXJ 33 
TXJ H8    H8  H 0 1 N N N N N N 170.925 145.900 168.772 2.544  -3.953 -0.384 H8    TXJ 34 
TXJ H9    H9  H 0 1 N N N N N N 170.843 147.512 167.985 3.878  -3.473 -1.460 H9    TXJ 35 
TXJ H10   H10 H 0 1 N N N N N N 171.873 147.576 170.059 4.657  -4.725 0.419  H10   TXJ 36 
TXJ H11   H11 H 0 1 N N N N N N 168.224 143.947 169.348 0.672  -2.124 1.998  H11   TXJ 37 
TXJ H12   H12 H 0 1 N N N N N N 169.681 144.733 168.652 0.843  -2.842 0.378  H12   TXJ 38 
TXJ H13   H13 H 0 1 N N N N N N 171.424 145.108 171.825 0.756  -0.947 -1.823 H13   TXJ 39 
TXJ H14   H14 H 0 1 N N N N N N 170.959 142.022 176.253 -6.252 -1.111 -1.451 H14   TXJ 40 
TXJ H15   H15 H 0 1 N N N N N N 166.215 143.202 173.179 -2.711 -0.902 -2.392 H15   TXJ 41 
TXJ H16   H16 H 0 1 N N N N N N 168.241 140.406 174.328 -7.182 -0.511 1.505  H16   TXJ 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
TXJ "C2'" "C3'" SING N N 1  
TXJ "C2'" "C1'" SING N N 2  
TXJ "C2'" "O4'" SING N N 3  
TXJ "C3'" "O3'" SING N N 4  
TXJ "C1'" N1    SING N N 5  
TXJ O2    C2    DOUB N N 6  
TXJ "C4'" "O4'" SING N N 7  
TXJ "C4'" P     SING N N 8  
TXJ C2    N1    SING N N 9  
TXJ C2    N3    SING N N 10 
TXJ N1    C6    SING N N 11 
TXJ OP1   P     DOUB N N 12 
TXJ P     O3A   SING N N 13 
TXJ P     O6    SING N N 14 
TXJ N3    C4    DOUB N N 15 
TXJ C6    C5    DOUB N N 16 
TXJ O3A   PB    SING N N 17 
TXJ C4    C5    SING N N 18 
TXJ C4    N4    SING N N 19 
TXJ O2B   PB    DOUB N N 20 
TXJ PB    O3B   SING N N 21 
TXJ PB    O1B   SING N N 22 
TXJ O1G   PG    DOUB N N 23 
TXJ O1B   PG    SING N N 24 
TXJ PG    O3G   SING N N 25 
TXJ PG    O2G   SING N N 26 
TXJ N4    H1    SING N N 27 
TXJ N4    H2    SING N N 28 
TXJ C5    H3    SING N N 29 
TXJ C6    H4    SING N N 30 
TXJ "C1'" H5    SING N N 31 
TXJ "C1'" H6    SING N N 32 
TXJ "C2'" H7    SING N N 33 
TXJ "C3'" H8    SING N N 34 
TXJ "C3'" H9    SING N N 35 
TXJ "O3'" H10   SING N N 36 
TXJ "C4'" H11   SING N N 37 
TXJ "C4'" H12   SING N N 38 
TXJ O6    H13   SING N N 39 
TXJ O2G   H14   SING N N 40 
TXJ O3B   H15   SING N N 41 
TXJ O3G   H16   SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
TXJ InChI            InChI                1.06  "InChI=1S/C8H16N3O12P3/c9-7-1-2-11(8(13)10-7)3-6(4-12)21-5-24(14,15)22-26(19,20)23-25(16,17)18/h1-2,6,12H,3-5H2,(H,14,15)(H,19,20)(H2,9,10,13)(H2,16,17,18)/t6-/m0/s1" 
TXJ InChIKey         InChI                1.06  FBSIEHDOPYOBJD-LURJTMIESA-N                                                                                                                                            
TXJ SMILES_CANONICAL CACTVS               3.385 "NC1=NC(=O)N(C[C@@H](CO)OC[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)C=C1"                                                                                                      
TXJ SMILES           CACTVS               3.385 "NC1=NC(=O)N(C[CH](CO)OC[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)C=C1"                                                                                                        
TXJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=CN(C(=O)N=C1N)C[C@@H](CO)OCP(=O)(O)OP(=O)(O)OP(=O)(O)O"                                                                                                            
TXJ SMILES           "OpenEye OEToolkits" 2.0.7 "C1=CN(C(=O)N=C1N)CC(CO)OCP(=O)(O)OP(=O)(O)OP(=O)(O)O"                                                                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           TXJ 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{S})-1-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-propan-2-yl]oxymethyl-[oxidanyl(phosphonooxy)phosphoryl]oxy-phosphinic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
TXJ "Create component" 2023-05-10 PDBJ 
TXJ "Initial release"  2024-05-08 RCSB 
# 
