data_T6J
#

_chem_comp.id                                   T6J
_chem_comp.name                                 "2-[(methylsulfonyl)methyl]-1H-benzimidazole"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C9 H10 N2 O2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-03-16
_chem_comp.pdbx_modified_date                   2020-03-20
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       210.253
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    T6J
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5RFD
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
T6J  N1  N1   N  0  1  Y  N  N  13.713  -28.116  4.588  -0.616   1.132  -0.535  N1  T6J   1  
T6J  C4  C1   C  0  1  Y  N  N  12.337  -25.043  3.297  -3.011  -1.412   0.079  C4  T6J   2  
T6J  C5  C2   C  0  1  Y  N  N  11.073  -25.416  2.894  -4.158  -0.750   0.414  C5  T6J   3  
T6J  C6  C3   C  0  1  Y  N  N  10.618  -26.755  3.007  -4.189   0.637   0.450  C6  T6J   4  
T6J  C7  C4   C  0  1  Y  N  N  11.410  -27.749  3.531  -3.058   1.369   0.161  C7  T6J   5  
T6J  C8  C5   C  0  1  Y  N  N  12.697  -27.383  3.957  -1.885   0.714  -0.187  C8  T6J   6  
T6J  N   N2   N  0  1  Y  N  N  14.458  -25.944  4.401  -0.596  -1.049  -0.592  N   T6J   7  
T6J  C   C6   C  0  1  N  N  N  15.879  -25.605  7.128   4.291  -0.014  -0.435  C   T6J   8  
T6J  O   O1   O  0  1  N  N  N  15.081  -27.884  7.918   2.443   1.192   1.008  O   T6J   9  
T6J  C1  C7   C  0  1  N  N  N  16.025  -27.589  5.539   1.575   0.018  -1.188  C1  T6J  10  
T6J  C2  C8   C  0  1  Y  N  N  14.751  -27.199  4.846   0.127   0.018  -0.773  C2  T6J  11  
T6J  C3  C9   C  0  1  Y  N  N  13.167  -26.046  3.846  -1.856  -0.691  -0.232  C3  T6J  12  
T6J  O1  O2   O  0  1  N  N  N  17.479  -27.467  7.617   2.428  -1.259   0.955  O1  T6J  13  
T6J  S   S1   S  0  1  N  N  N  16.130  -27.242  7.222   2.628  -0.020   0.289  S   T6J  14  
T6J  H9  H1   H  0  1  N  N  N  13.703  -29.091  4.810  -0.312   2.051  -0.601  H9  T6J  15  
T6J  H5  H2   H  0  1  N  N  N  12.680  -24.024  3.197  -2.998  -2.492   0.054  H5  T6J  16  
T6J  H6  H3   H  0  1  N  N  N  10.411  -24.669  2.481  -5.049  -1.311   0.653  H6  T6J  17  
T6J  H7  H4   H  0  1  N  N  N   9.621  -27.000  2.672  -5.104   1.146   0.717  H7  T6J  18  
T6J  H8  H5   H  0  1  N  N  N  11.058  -28.767  3.611  -3.088   2.449   0.190  H8  T6J  19  
T6J  H1  H7   H  0  1  N  N  N  16.711  -25.137  6.582   5.034  -0.036   0.361  H1  T6J  20  
T6J  H   H8   H  0  1  N  N  N  14.936  -25.409  6.597   4.413  -0.891  -1.071  H   T6J  21  
T6J  H2  H9   H  0  1  N  N  N  15.823  -25.184  8.143   4.424   0.888  -1.032  H2  T6J  22  
T6J  H4  H10  H  0  1  N  N  N  16.851  -27.062  5.038   1.778  -0.860  -1.801  H4  T6J  23  
T6J  H3  H11  H  0  1  N  N  N  16.153  -28.674  5.414   1.788   0.919  -1.763  H3  T6J  24  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
T6J  C   S   SING  N  N   1  
T6J  O   S   DOUB  N  N   2  
T6J  S   O1  DOUB  N  N   3  
T6J  C1  S   SING  N  N   4  
T6J  C2  C1  SING  N  N   5  
T6J  C2  N   DOUB  Y  N   6  
T6J  N   C3  SING  Y  N   7  
T6J  C3  C4  SING  Y  N   8  
T6J  C4  C5  DOUB  Y  N   9  
T6J  C5  C6  SING  Y  N  10  
T6J  C6  C7  DOUB  Y  N  11  
T6J  C7  C8  SING  Y  N  12  
T6J  C3  C8  DOUB  Y  N  13  
T6J  C8  N1  SING  Y  N  14  
T6J  N1  C2  SING  Y  N  15  
T6J  N1  H9  SING  N  N  16  
T6J  C4  H5  SING  N  N  17  
T6J  C5  H6  SING  N  N  18  
T6J  C6  H7  SING  N  N  19  
T6J  C7  H8  SING  N  N  20  
T6J  C   H1  SING  N  N  21  
T6J  C   H   SING  N  N  22  
T6J  C   H2  SING  N  N  23  
T6J  C1  H4  SING  N  N  24  
T6J  C1  H3  SING  N  N  25  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
T6J  SMILES            ACDLabs               12.01  "n1c(nc2ccccc12)CS(C)(=O)=O"  
T6J  InChI             InChI                 1.03   "InChI=1S/C9H10N2O2S/c1-14(12,13)6-9-10-7-4-2-3-5-8(7)11-9/h2-5H,6H2,1H3,(H,10,11)"  
T6J  InChIKey          InChI                 1.03   WCWTYTQSZZWNEW-UHFFFAOYSA-N  
T6J  SMILES_CANONICAL  CACTVS                3.385  "C[S](=O)(=O)Cc1[nH]c2ccccc2n1"  
T6J  SMILES            CACTVS                3.385  "C[S](=O)(=O)Cc1[nH]c2ccccc2n1"  
T6J  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CS(=O)(=O)Cc1[nH]c2ccccc2n1"  
T6J  SMILES            "OpenEye OEToolkits"  2.0.7  "CS(=O)(=O)Cc1[nH]c2ccccc2n1"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
T6J  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-[(methylsulfonyl)methyl]-1H-benzimidazole"  
T6J  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "2-(methylsulfonylmethyl)-1~{H}-benzimidazole"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
T6J  "Create component"  2020-03-16  RCSB  
T6J  "Initial release"   2020-03-25  RCSB  
##
