data_SEJ
#

_chem_comp.id                                   SEJ
_chem_comp.name                                 beta-D-arabinopyranose
_chem_comp.type                                 "D-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C5 H10 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "beta-D-arabinose; D-arabinose; arabinose"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-03-06
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       150.130
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    SEJ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  SEJ  beta-D-arabinose  PDB  ?  
2  SEJ  D-arabinose       PDB  ?  
3  SEJ  arabinose         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SEJ  C1   C1   C  0  1  N  N  R  22.452  22.430  30.097  -1.314  -0.279  -0.557  C1   SEJ   1  
SEJ  C2   C2   C  0  1  N  N  S  21.708  23.171  28.983  -0.751   1.008   0.052  C2   SEJ   2  
SEJ  C3   C3   C  0  1  N  N  R  20.780  22.186  28.266   0.775   1.004  -0.087  C3   SEJ   3  
SEJ  C4   C4   C  0  1  N  N  R  19.810  21.550  29.253   1.335  -0.252   0.587  C4   SEJ   4  
SEJ  C5   C5   C  0  1  N  N  N  20.510  20.963  30.476   0.692  -1.490  -0.043  C5   SEJ   5  
SEJ  O1   O1   O  0  1  N  Y  N  23.291  21.452  29.469  -2.732  -0.310  -0.380  O1   SEJ   6  
SEJ  O2   O2   O  0  1  N  N  N  22.618  23.793  28.050  -1.105   1.077   1.435  O2   SEJ   7  
SEJ  O3   O3   O  0  1  N  N  N  20.010  22.931  27.299   1.128   1.002  -1.472  O3   SEJ   8  
SEJ  O4   O4   O  0  1  N  N  N  18.912  22.567  29.717   2.751  -0.303   0.400  O4   SEJ   9  
SEJ  O5   O5   O  0  1  N  N  N  21.468  21.892  31.014  -0.729  -1.409   0.095  O5   SEJ  10  
SEJ  H1   H1   H  0  1  N  N  N  23.080  23.159  30.630  -1.079  -0.311  -1.620  H1   SEJ  11  
SEJ  H2   H2   H  0  1  N  N  N  21.084  23.948  29.449  -1.163   1.869  -0.473  H2   SEJ  12  
SEJ  H3   H3   H  0  1  N  N  N  21.378  21.404  27.775   1.187   1.891   0.394  H3   SEJ  13  
SEJ  H4   H4   H  0  1  N  N  N  19.251  20.752  28.743   1.109  -0.225   1.653  H4   SEJ  14  
SEJ  H51  H51  H  0  1  N  N  N  19.758  20.734  31.246   0.952  -1.538  -1.100  H51  SEJ  15  
SEJ  H52  H52  H  0  1  N  N  N  21.029  20.038  30.184   1.055  -2.385   0.463  H52  SEJ  16  
SEJ  HO2  HO2  H  0  1  N  Y  N  23.183  24.399  28.515  -2.058   1.078   1.597  HO2  SEJ  17  
SEJ  HO3  HO3  H  0  1  N  Y  N  19.424  22.342  26.838   2.081   0.999  -1.635  HO3  SEJ  18  
SEJ  HO4  HO4  H  0  1  N  Y  N  18.297  22.189  30.335   3.174  -1.074   0.802  HO4  SEJ  19  
SEJ  HO1  HO1  H  0  1  N  Y  N  23.770  20.971  30.134  -3.156  -1.099  -0.742  HO1  SEJ  20  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SEJ  O3  C3   SING  N  N   1  
SEJ  O2  C2   SING  N  N   2  
SEJ  C3  C2   SING  N  N   3  
SEJ  C3  C4   SING  N  N   4  
SEJ  C2  C1   SING  N  N   5  
SEJ  C4  O4   SING  N  N   6  
SEJ  C4  C5   SING  N  N   7  
SEJ  O1  C1   SING  N  N   8  
SEJ  C1  O5   SING  N  N   9  
SEJ  C5  O5   SING  N  N  10  
SEJ  C1  H1   SING  N  N  11  
SEJ  C2  H2   SING  N  N  12  
SEJ  C3  H3   SING  N  N  13  
SEJ  C4  H4   SING  N  N  14  
SEJ  C5  H51  SING  N  N  15  
SEJ  C5  H52  SING  N  N  16  
SEJ  O2  HO2  SING  N  N  17  
SEJ  O3  HO3  SING  N  N  18  
SEJ  O4  HO4  SING  N  N  19  
SEJ  O1  HO1  SING  N  N  20  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SEJ  InChI             InChI                 1.03   "InChI=1S/C5H10O5/c6-2-1-10-5(9)4(8)3(2)7/h2-9H,1H2/t2-,3-,4+,5-/m1/s1"  
SEJ  InChIKey          InChI                 1.03   SRBFZHDQGSBBOR-SQOUGZDYSA-N  
SEJ  SMILES_CANONICAL  CACTVS                3.385  "O[C@@H]1CO[C@@H](O)[C@@H](O)[C@@H]1O"  
SEJ  SMILES            CACTVS                3.385  "O[CH]1CO[CH](O)[CH](O)[CH]1O"  
SEJ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C1[C@H]([C@H]([C@@H]([C@@H](O1)O)O)O)O"  
SEJ  SMILES            "OpenEye OEToolkits"  2.0.7  "C1C(C(C(C(O1)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SEJ  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  2.0.7  "(2~{R},3~{S},4~{R},5~{R})-oxane-2,3,4,5-tetrol"  
SEJ  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    DArapb  
SEJ  "COMMON NAME"                          GMML                  1.0    b-D-arabinopyranose  
SEJ  "IUPAC CARBOHYDRATE SYMBOL"            PDB-CARE              1.0    b-D-Arap  
SEJ  "SNFG CARBOHYDRATE SYMBOL"             GMML                  1.0    Ara  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
SEJ  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
SEJ  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
SEJ  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
SEJ  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SEJ  "Create component"          2020-03-06  RCSB  
SEJ  "Other modification"        2020-06-03  RCSB  
SEJ  "Other modification"        2020-06-10  RCSB  
SEJ  "Other modification"        2020-07-03  RCSB  
SEJ  "Modify component atom id"  2020-07-17  RCSB  
SEJ  "Initial release"           2020-07-29  RCSB  
##
