data_R4J
#

_chem_comp.id                                   R4J
_chem_comp.name                                 "[(2R)-5-chloro-7-{2-[(2S)-1-chloro-2,3-dihydroxypropan-2-yl]thieno[3,2-b]pyridin-7-yl}-2,3-dihydro-1-benzofuran-2-yl](piperazin-1-yl)methanone"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H23 Cl2 N3 O4 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-01-29
_chem_comp.pdbx_modified_date                   2020-04-24
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       508.417
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    R4J
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6VN6
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
R4J  C2    C1   C   0  1  Y  N  N  26.654  -2.079  27.441  -1.946  -3.100   1.312  C2    R4J   1  
R4J  C3    C2   C   0  1  Y  N  N  26.403  -1.253  28.525  -1.017  -2.999   0.295  C3    R4J   2  
R4J  C4    C3   C   0  1  Y  N  N  26.004   0.080  28.344  -0.701  -1.755  -0.243  C4    R4J   3  
R4J  C5    C4   C   0  1  Y  N  N  25.756   0.957  29.516   0.297  -1.651  -1.334  C5    R4J   4  
R4J  C6    C5   C   0  1  Y  N  N  24.552   1.670  29.661   0.051  -2.220  -2.582  C6    R4J   5  
R4J  C7    C6   C   0  1  Y  N  N  24.379   2.486  30.783   1.008  -2.101  -3.574  C7    R4J   6  
R4J  C11   C7   C   0  1  Y  N  N  28.659   1.222  32.213   3.634   0.281  -0.555  C11   R4J   7  
R4J  C16   C8   C   0  1  N  N  N  30.769   2.367  32.877   4.206   2.012   1.127  C16   R4J   8  
R4J  C18   C9   C   0  1  N  N  N  29.637   0.683  34.454   5.756   0.096   0.715  C18   R4J   9  
R4J  C24   C10  C   0  1  N  N  N  25.847   0.552  24.689  -2.772   0.670   1.575  C24   R4J  10  
R4J  C27   C11  C   0  1  N  N  N  26.966   2.917  25.093  -3.373   1.505  -0.718  C27   R4J  11  
R4J  O28   O1   O   0  1  N  N  N  27.949   2.493  24.513  -3.194   0.961  -1.787  O28   R4J  12  
R4J  C30   C12  C   0  1  N  N  N  28.137   5.118  25.543  -5.596   2.197  -1.489  C30   R4J  13  
R4J  C31   C13  C   0  1  N  N  N  28.633   5.413  26.976  -6.909   1.742  -0.842  C31   R4J  14  
R4J  C33   C14  C   0  1  N  N  N  26.278   4.937  27.817  -6.115   2.333   1.372  C33   R4J  15  
R4J  C34   C15  C   0  1  N  N  N  25.834   4.820  26.349  -4.770   2.813   0.816  C34   R4J  16  
R4J  CL1   CL1  CL  0  0  N  N  N  27.155  -3.712  27.740  -2.333  -4.653   1.985  CL1   R4J  17  
R4J  N8    N1   N   0  1  Y  N  N  25.316   2.607  31.709   2.136  -1.467  -3.365  N8    R4J  18  
R4J  C9    C16  C   0  1  Y  N  N  26.502   1.948  31.627   2.435  -0.895  -2.182  C9    R4J  19  
R4J  C10   C17  C   0  1  Y  N  N  27.623   1.971  32.544   3.631  -0.165  -1.797  C10   R4J  20  
R4J  S12   S1   S   0  1  Y  N  N  28.346   0.405  30.700   2.150  -0.141   0.278  S12   R4J  21  
R4J  C13   C18  C   0  1  Y  N  N  26.749   1.108  30.527   1.515  -0.970  -1.135  C13   R4J  22  
R4J  C14   C19  C   0  1  N  N  S  29.945   1.077  32.999   4.764   1.063   0.064  C14   R4J  23  
R4J  O15   O2   O   0  1  N  N  N  30.710   0.015  32.433   5.431   1.820  -0.948  O15   R4J  24  
R4J  O17   O3   O   0  1  N  N  N  30.215   3.425  33.663   5.277   2.753   1.714  O17   R4J  25  
R4J  CL19  CL2  CL  0  0  N  N  N  31.117   0.566  35.474   7.108   1.031   1.456  CL19  R4J  26  
R4J  C20   C20  C   0  1  Y  N  N  25.848   0.581  27.028  -1.328  -0.599   0.247  C20   R4J  27  
R4J  O21   O4   O   0  1  N  N  N  25.465   1.810  26.611  -1.166   0.702  -0.117  O21   R4J  28  
R4J  C22   C21  C   0  1  N  N  R  25.745   2.018  25.212  -2.297   1.466   0.337  C22   R4J  29  
R4J  C25   C22  C   0  1  Y  N  N  26.095  -0.264  25.943  -2.262  -0.725   1.265  C25   R4J  30  
R4J  C26   C23  C   0  1  Y  N  N  26.497  -1.583  26.142  -2.563  -1.959   1.799  C26   R4J  31  
R4J  N29   N2   N   0  1  N  N  N  26.968   4.193  25.618  -4.533   2.146  -0.473  N29   R4J  32  
R4J  N32   N3   N   0  1  N  N  N  27.512   5.747  27.884  -7.161   2.544   0.362  N32   R4J  33  
R4J  H1    H1   H   0  1  N  N  N  26.516  -1.642  29.526  -0.535  -3.888  -0.083  H1    R4J  34  
R4J  H2    H2   H   0  1  N  N  N  23.773   1.588  28.917  -0.873  -2.746  -2.772  H2    R4J  35  
R4J  H3    H3   H   0  1  N  N  N  23.455   3.033  30.897   0.822  -2.540  -4.543  H3    R4J  36  
R4J  H4    H4   H   0  1  N  N  N  31.795   2.168  33.220   3.499   2.700   0.663  H4    R4J  37  
R4J  H5    H5   H   0  1  N  N  N  30.789   2.679  31.822   3.697   1.434   1.899  H5    R4J  38  
R4J  H6    H6   H   0  1  N  N  N  28.969   1.441  34.889   5.247  -0.481   1.487  H6    R4J  39  
R4J  H7    H7   H   0  1  N  N  N  29.132  -0.294  34.454   6.154  -0.580  -0.042  H7    R4J  40  
R4J  H8    H8   H   0  1  N  N  N  24.911   0.244  24.200  -2.317   1.058   2.486  H8    R4J  41  
R4J  H9    H9   H   0  1  N  N  N  26.682   0.446  23.981  -3.860   0.679   1.650  H9    R4J  42  
R4J  H10   H10  H   0  1  N  N  N  28.944   4.647  24.962  -5.345   1.532  -2.315  H10   R4J  43  
R4J  H11   H11  H   0  1  N  N  N  27.835   6.057  25.056  -5.703   3.217  -1.856  H11   R4J  44  
R4J  H12   H12  H   0  1  N  N  N  29.153   4.525  27.363  -7.728   1.878  -1.548  H12   R4J  45  
R4J  H13   H13  H   0  1  N  N  N  29.331   6.262  26.944  -6.834   0.689  -0.569  H13   R4J  46  
R4J  H14   H14  H   0  1  N  N  N  25.485   5.424  28.404  -6.051   1.273   1.614  H14   R4J  47  
R4J  H15   H15  H   0  1  N  N  N  26.473   3.934  28.224  -6.359   2.898   2.272  H15   R4J  48  
R4J  H16   H16  H   0  1  N  N  N  25.619   5.816  25.936  -4.798   3.892   0.670  H16   R4J  49  
R4J  H17   H17  H   0  1  N  N  N  24.936   4.189  26.272  -3.973   2.558   1.515  H17   R4J  50  
R4J  H18   H18  H   0  1  N  N  N  27.612   2.566  33.445   4.454   0.000  -2.476  H18   R4J  51  
R4J  H19   H19  H   0  1  N  N  N  31.520  -0.086  32.918   4.861   2.454  -1.403  H19   R4J  52  
R4J  H20   H20  H   0  1  N  N  N  30.748   4.205  33.565   4.996   3.376   2.398  H20   R4J  53  
R4J  H21   H21  H   0  1  N  N  N  24.890   2.506  24.722  -1.997   2.475   0.618  H21   R4J  54  
R4J  H22   H22  H   0  1  N  N  N  26.688  -2.223  25.293  -3.285  -2.037   2.599  H22   R4J  55  
R4J  H23   H23  H   0  1  N  N  N  27.860   5.677  28.819  -7.251   3.522   0.133  H23   R4J  56  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
R4J  O28  C27   DOUB  N  N   1  
R4J  C24  C22   SING  N  N   2  
R4J  C24  C25   SING  N  N   3  
R4J  C27  C22   SING  N  N   4  
R4J  C27  N29   SING  N  N   5  
R4J  C22  O21   SING  N  N   6  
R4J  C30  N29   SING  N  N   7  
R4J  C30  C31   SING  N  N   8  
R4J  N29  C34   SING  N  N   9  
R4J  C25  C26   DOUB  Y  N  10  
R4J  C25  C20   SING  Y  N  11  
R4J  C26  C2    SING  Y  N  12  
R4J  C34  C33   SING  N  N  13  
R4J  O21  C20   SING  N  N  14  
R4J  C31  N32   SING  N  N  15  
R4J  C20  C4    DOUB  Y  N  16  
R4J  C2   CL1   SING  N  N  17  
R4J  C2   C3    DOUB  Y  N  18  
R4J  C33  N32   SING  N  N  19  
R4J  C4   C3    SING  Y  N  20  
R4J  C4   C5    SING  N  N  21  
R4J  C5   C6    DOUB  Y  N  22  
R4J  C5   C13   SING  Y  N  23  
R4J  C6   C7    SING  Y  N  24  
R4J  C13  S12   SING  Y  N  25  
R4J  C13  C9    DOUB  Y  N  26  
R4J  S12  C11   SING  Y  N  27  
R4J  C7   N8    DOUB  Y  N  28  
R4J  C9   N8    SING  Y  N  29  
R4J  C9   C10   SING  Y  N  30  
R4J  C11  C10   DOUB  Y  N  31  
R4J  C11  C14   SING  N  N  32  
R4J  O15  C14   SING  N  N  33  
R4J  C16  C14   SING  N  N  34  
R4J  C16  O17   SING  N  N  35  
R4J  C14  C18   SING  N  N  36  
R4J  C18  CL19  SING  N  N  37  
R4J  C3   H1    SING  N  N  38  
R4J  C6   H2    SING  N  N  39  
R4J  C7   H3    SING  N  N  40  
R4J  C16  H4    SING  N  N  41  
R4J  C16  H5    SING  N  N  42  
R4J  C18  H6    SING  N  N  43  
R4J  C18  H7    SING  N  N  44  
R4J  C24  H8    SING  N  N  45  
R4J  C24  H9    SING  N  N  46  
R4J  C30  H10   SING  N  N  47  
R4J  C30  H11   SING  N  N  48  
R4J  C31  H12   SING  N  N  49  
R4J  C31  H13   SING  N  N  50  
R4J  C33  H14   SING  N  N  51  
R4J  C33  H15   SING  N  N  52  
R4J  C34  H16   SING  N  N  53  
R4J  C34  H17   SING  N  N  54  
R4J  C10  H18   SING  N  N  55  
R4J  O15  H19   SING  N  N  56  
R4J  O17  H20   SING  N  N  57  
R4J  C22  H21   SING  N  N  58  
R4J  C26  H22   SING  N  N  59  
R4J  N32  H23   SING  N  N  60  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
R4J  SMILES            ACDLabs               12.01  "c4(Cl)cc(c1ccnc2cc(C(CO)(CCl)O)sc12)c3OC(Cc3c4)C(N5CCNCC5)=O"  
R4J  InChI             InChI                 1.03   "InChI=1S/C23H23Cl2N3O4S/c24-11-23(31,12-29)19-10-17-21(33-19)15(1-2-27-17)16-9-14(25)7-13-8-18(32-20(13)16)22(30)28-5-3-26-4-6-28/h1-2,7,9-10,18,26,29,31H,3-6,8,11-12H2/t18-,23+/m1/s1"  
R4J  InChIKey          InChI                 1.03   QPYNPPDGRISUAE-JPYJTQIMSA-N  
R4J  SMILES_CANONICAL  CACTVS                3.385  "OC[C@@](O)(CCl)c1sc2c(c1)nccc2c3cc(Cl)cc4C[C@@H](Oc34)C(=O)N5CCNCC5"  
R4J  SMILES            CACTVS                3.385  "OC[C](O)(CCl)c1sc2c(c1)nccc2c3cc(Cl)cc4C[CH](Oc34)C(=O)N5CCNCC5"  
R4J  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cnc2cc(sc2c1c3cc(cc4c3O[C@H](C4)C(=O)N5CCNCC5)Cl)[C@@](CO)(CCl)O"  
R4J  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cnc2cc(sc2c1c3cc(cc4c3OC(C4)C(=O)N5CCNCC5)Cl)C(CO)(CCl)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
R4J  "SYSTEMATIC NAME"  ACDLabs               12.01  "[(2R)-5-chloro-7-{2-[(2S)-1-chloro-2,3-dihydroxypropan-2-yl]thieno[3,2-b]pyridin-7-yl}-2,3-dihydro-1-benzofuran-2-yl](piperazin-1-yl)methanone"  
R4J  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "[(2~{R})-5-chloranyl-7-[2-[(2~{S})-1-chloranyl-2,3-bis(oxidanyl)propan-2-yl]thieno[3,2-b]pyridin-7-yl]-2,3-dihydro-1-benzofuran-2-yl]-piperazin-1-yl-methanone"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
R4J  "Create component"  2020-01-29  RCSB  
R4J  "Initial release"   2020-04-29  RCSB  
##
