data_R3J
#

_chem_comp.id                                   R3J
_chem_comp.name                                 "benzyl [2-(5-hydroxy-4-{[2-(2-methoxypyridin-4-yl)ethyl]carbamoyl}-6-oxo-1,6-dihydropyrimidin-2-yl)propan-2-yl]carbamate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H27 N5 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-01-28
_chem_comp.pdbx_modified_date                   2021-02-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       481.501
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    R3J
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6VLL
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
R3J  C10  C1   C  0  1  N  N  N  40.092  16.164  17.856   -0.960  -3.830   0.410  C10  R3J   1  
R3J  C11  C2   C  0  1  N  N  N  39.643  14.442  16.225   -1.157  -1.742  -0.638  C11  R3J   2  
R3J  C12  C3   C  0  1  N  N  N  38.683  13.516  15.511   -2.010  -0.759  -1.399  C12  R3J   3  
R3J  C21  C4   C  0  1  Y  N  N  43.559  12.696  12.566    6.795   1.326  -0.638  C21  R3J   4  
R3J  C22  C5   C  0  1  Y  N  N  42.553  12.306  11.720    8.085   1.736  -0.326  C22  R3J   5  
R3J  C23  C6   C  0  1  N  N  N  39.407  12.193  15.241   -1.192   0.498  -1.702  C23  R3J   6  
R3J  C24  C7   C  0  1  N  N  N  38.167  14.208  14.244   -2.473  -1.395  -2.711  C24  R3J   7  
R3J  C01  C8   C  0  1  N  N  N  40.686  13.114  10.494   10.406   1.912  -0.802  C01  R3J   8  
R3J  O01  O1   O  0  1  N  N  N  42.026  13.275  10.847    9.102   1.464  -1.181  O01  R3J   9  
R3J  N01  N1   N  0  1  Y  N  N  42.081  11.062  11.666    8.330   2.390   0.798  N01  R3J  10  
R3J  C02  C9   C  0  1  Y  N  N  42.594  10.136  12.495    7.370   2.675   1.656  C02  R3J  11  
R3J  C03  C10  C  0  1  Y  N  N  43.623  10.494  13.395    6.065   2.298   1.410  C03  R3J  12  
R3J  C04  C11  C  0  1  Y  N  N  44.102  11.786  13.422    5.766   1.610   0.242  C04  R3J  13  
R3J  C05  C12  C  0  1  N  N  N  45.233  12.151  14.409    4.352   1.188  -0.063  C05  R3J  14  
R3J  C06  C13  C  0  1  N  N  N  45.121  13.559  15.023    4.103  -0.210   0.508  C06  R3J  15  
R3J  N02  N2   N  0  1  N  N  N  43.775  13.803  15.495    2.728  -0.620   0.211  N02  R3J  16  
R3J  C07  C14  C  0  1  N  N  N  43.368  15.080  16.045    2.281  -1.824   0.620  C07  R3J  17  
R3J  O02  O2   O  0  1  N  N  N  44.115  15.996  16.110    3.019  -2.570   1.234  O02  R3J  18  
R3J  C08  C15  C  0  1  N  N  N  41.916  15.212  16.513    0.892  -2.239   0.320  C08  R3J  19  
R3J  C09  C16  C  0  1  N  N  N  41.487  16.105  17.503    0.427  -3.476   0.738  C09  R3J  20  
R3J  O03  O3   O  0  1  N  N  N  42.384  16.949  18.154    1.225  -4.330   1.425  O03  R3J  21  
R3J  O04  O4   O  0  1  N  N  N  39.648  17.023  18.844   -1.431  -4.902   0.748  O04  R3J  22  
R3J  N03  N3   N  0  1  N  N  N  39.195  15.361  17.236   -1.700  -2.928  -0.272  N03  R3J  23  
R3J  N04  N4   N  0  1  N  N  N  40.979  14.382  15.882    0.071  -1.418  -0.359  N04  R3J  24  
R3J  N05  N5   N  0  1  N  N  N  37.588  13.248  16.419   -3.178  -0.399  -0.592  N05  R3J  25  
R3J  H1   H1   H  0  1  N  N  N  43.917  13.715  12.554    6.597   0.796  -1.558  H1   R3J  26  
R3J  H2   H2   H  0  1  N  N  N  39.746  11.759  16.193   -0.323   0.230  -2.303  H2   R3J  27  
R3J  H3   H3   H  0  1  N  N  N  38.719  11.494  14.744   -1.809   1.209  -2.252  H3   R3J  28  
R3J  H4   H4   H  0  1  N  N  N  40.276  12.376  14.592   -0.863   0.951  -0.767  H4   R3J  29  
R3J  H5   H5   H  0  1  N  N  N  37.662  15.146  14.518   -3.055  -2.291  -2.495  H5   R3J  30  
R3J  H6   H6   H  0  1  N  N  N  39.013  14.429  13.576   -3.090  -0.684  -3.261  H6   R3J  31  
R3J  H7   H7   H  0  1  N  N  N  37.456  13.546  13.728   -1.604  -1.663  -3.312  H7   R3J  32  
R3J  H8   H8   H  0  1  N  N  N  40.386  13.924   9.813   11.124   1.630  -1.571  H8   R3J  33  
R3J  H9   H9   H  0  1  N  N  N  40.553  12.145   9.991   10.399   2.996  -0.691  H9   R3J  34  
R3J  H10  H10  H  0  1  N  N  N  40.062  13.146  11.399   10.687   1.451   0.145  H10  R3J  35  
R3J  H11  H11  H  0  1  N  N  N  42.221   9.123  12.473    7.608   3.211   2.564  H11  R3J  36  
R3J  H12  H12  H  0  1  N  N  N  44.035   9.753  14.064    5.285   2.537   2.118  H12  R3J  37  
R3J  H13  H13  H  0  1  N  N  N  45.222  11.418  15.229    3.656   1.895   0.390  H13  R3J  38  
R3J  H14  H14  H  0  1  N  N  N  46.191  12.087  13.872    4.202   1.172  -1.142  H14  R3J  39  
R3J  H15  H15  H  0  1  N  N  N  45.821  13.642  15.868    4.798  -0.916   0.055  H15  R3J  40  
R3J  H16  H16  H  0  1  N  N  N  45.378  14.308  14.259    4.252  -0.194   1.587  H16  R3J  41  
R3J  H17  H17  H  0  1  N  N  N  43.103  13.065  15.440    2.139  -0.025  -0.279  H17  R3J  42  
R3J  H18  H18  H  0  1  N  N  N  41.917  17.476  18.792    0.796  -5.162   1.665  H18  R3J  43  
R3J  H19  H19  H  0  1  N  N  N  38.226  15.407  17.480   -2.620  -3.130  -0.501  H19  R3J  44  
R3J  H20  H20  H  0  1  N  N  N  37.701  13.368  17.405   -3.298  -0.788   0.289  H20  R3J  45  
R3J  C25  C17  C  0  1  N  N  N       ?       ?       ?   -4.087   0.472  -1.072  C25  R3J  46  
R3J  O26  O5   O  0  1  N  N  N       ?       ?       ?   -5.161   0.803  -0.331  O26  R3J  47  
R3J  O25  O6   O  0  1  N  N  N       ?       ?       ?   -3.938   0.959  -2.176  O25  R3J  48  
R3J  C26  C18  C  0  1  N  N  N       ?       ?       ?   -6.098   1.747  -0.912  C26  R3J  49  
R3J  C27  C19  C  0  1  Y  N  N       ?       ?       ?   -7.227   1.994   0.055  C27  R3J  50  
R3J  C28  C20  C  0  1  Y  N  N       ?       ?       ?   -7.131   3.015   0.983  C28  R3J  51  
R3J  C29  C21  C  0  1  Y  N  N       ?       ?       ?   -8.167   3.242   1.870  C29  R3J  52  
R3J  C30  C22  C  0  1  Y  N  N       ?       ?       ?   -9.298   2.449   1.830  C30  R3J  53  
R3J  C31  C23  C  0  1  Y  N  N       ?       ?       ?   -9.394   1.429   0.902  C31  R3J  54  
R3J  C32  C24  C  0  1  Y  N  N       ?       ?       ?   -8.361   1.204   0.012  C32  R3J  55  
R3J  H21  H21  H  0  1  N  N  N       ?       ?       ?   -5.586   2.686  -1.121  H21  R3J  56  
R3J  H22  H22  H  0  1  N  N  N       ?       ?       ?   -6.498   1.337  -1.840  H22  R3J  57  
R3J  H23  H23  H  0  1  N  N  N       ?       ?       ?   -6.247   3.635   1.014  H23  R3J  58  
R3J  H24  H24  H  0  1  N  N  N       ?       ?       ?   -8.091   4.039   2.595  H24  R3J  59  
R3J  H25  H25  H  0  1  N  N  N       ?       ?       ?  -10.106   2.626   2.524  H25  R3J  60  
R3J  H26  H26  H  0  1  N  N  N       ?       ?       ?  -10.278   0.809   0.871  H26  R3J  61  
R3J  H27  H27  H  0  1  N  N  N       ?       ?       ?   -8.436   0.407  -0.713  H27  R3J  62  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
R3J  C01  O01  SING  N  N   1  
R3J  O01  C22  SING  N  N   2  
R3J  N01  C22  DOUB  Y  N   3  
R3J  N01  C02  SING  Y  N   4  
R3J  C22  C21  SING  Y  N   5  
R3J  C02  C03  DOUB  Y  N   6  
R3J  C21  C04  DOUB  Y  N   7  
R3J  C03  C04  SING  Y  N   8  
R3J  C04  C05  SING  N  N   9  
R3J  C24  C12  SING  N  N  10  
R3J  C05  C06  SING  N  N  11  
R3J  C06  N02  SING  N  N  12  
R3J  C23  C12  SING  N  N  13  
R3J  N02  C07  SING  N  N  14  
R3J  C12  C11  SING  N  N  15  
R3J  C12  N05  SING  N  N  16  
R3J  N04  C11  DOUB  N  N  17  
R3J  N04  C08  SING  N  N  18  
R3J  C07  O02  DOUB  N  N  19  
R3J  C07  C08  SING  N  N  20  
R3J  C11  N03  SING  N  N  21  
R3J  C08  C09  DOUB  N  N  22  
R3J  N03  C10  SING  N  N  23  
R3J  C09  C10  SING  N  N  24  
R3J  C09  O03  SING  N  N  25  
R3J  C10  O04  DOUB  N  N  26  
R3J  C21  H1   SING  N  N  27  
R3J  C23  H2   SING  N  N  28  
R3J  C23  H3   SING  N  N  29  
R3J  C23  H4   SING  N  N  30  
R3J  C24  H5   SING  N  N  31  
R3J  C24  H6   SING  N  N  32  
R3J  C24  H7   SING  N  N  33  
R3J  C01  H8   SING  N  N  34  
R3J  C01  H9   SING  N  N  35  
R3J  C01  H10  SING  N  N  36  
R3J  C02  H11  SING  N  N  37  
R3J  C03  H12  SING  N  N  38  
R3J  C05  H13  SING  N  N  39  
R3J  C05  H14  SING  N  N  40  
R3J  C06  H15  SING  N  N  41  
R3J  C06  H16  SING  N  N  42  
R3J  N02  H17  SING  N  N  43  
R3J  O03  H18  SING  N  N  44  
R3J  N03  H19  SING  N  N  45  
R3J  N05  H20  SING  N  N  46  
R3J  N05  C25  SING  N  N  47  
R3J  C25  O26  SING  N  N  48  
R3J  C25  O25  DOUB  N  N  49  
R3J  O26  C26  SING  N  N  50  
R3J  C26  C27  SING  N  N  51  
R3J  C27  C28  SING  Y  N  52  
R3J  C28  C29  DOUB  Y  N  53  
R3J  C29  C30  SING  Y  N  54  
R3J  C30  C31  DOUB  Y  N  55  
R3J  C31  C32  SING  Y  N  56  
R3J  C32  C27  DOUB  Y  N  57  
R3J  C26  H21  SING  N  N  58  
R3J  C26  H22  SING  N  N  59  
R3J  C28  H23  SING  N  N  60  
R3J  C29  H24  SING  N  N  61  
R3J  C30  H25  SING  N  N  62  
R3J  C31  H26  SING  N  N  63  
R3J  C32  H27  SING  N  N  64  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
R3J  SMILES            ACDLabs               12.01  "C2(=O)C(=C(C(NCCc1cc(OC)ncc1)=O)N=C(N2)C(NC(OCc3ccccc3)=O)(C)C)O"  
R3J  InChI             InChI                 1.03   "InChI=1S/C24H27N5O6/c1-24(2,29-23(33)35-14-16-7-5-4-6-8-16)22-27-18(19(30)21(32)28-22)20(31)26-12-10-15-9-11-25-17(13-15)34-3/h4-9,11,13,30H,10,12,14H2,1-3H3,(H,26,31)(H,29,33)(H,27,28,32)"  
R3J  InChIKey          InChI                 1.03   FTJIBWRYBXLDQU-UHFFFAOYSA-N  
R3J  SMILES_CANONICAL  CACTVS                3.385  "COc1cc(CCNC(=O)C2=C(O)C(=O)NC(=N2)C(C)(C)NC(=O)OCc3ccccc3)ccn1"  
R3J  SMILES            CACTVS                3.385  "COc1cc(CCNC(=O)C2=C(O)C(=O)NC(=N2)C(C)(C)NC(=O)OCc3ccccc3)ccn1"  
R3J  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)(C1=NC(=C(C(=O)N1)O)C(=O)NCCc2ccnc(c2)OC)NC(=O)OCc3ccccc3"  
R3J  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)(C1=NC(=C(C(=O)N1)O)C(=O)NCCc2ccnc(c2)OC)NC(=O)OCc3ccccc3"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
R3J  "SYSTEMATIC NAME"  ACDLabs               12.01  "benzyl [2-(5-hydroxy-4-{[2-(2-methoxypyridin-4-yl)ethyl]carbamoyl}-6-oxo-1,6-dihydropyrimidin-2-yl)propan-2-yl]carbamate"  
R3J  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(phenylmethyl) ~{N}-[2-[4-[2-(2-methoxypyridin-4-yl)ethylcarbamoyl]-5-oxidanyl-6-oxidanylidene-1~{H}-pyrimidin-2-yl]propan-2-yl]carbamate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
R3J  "Create component"  2020-01-28  RCSB  
R3J  "Initial release"   2021-02-24  RCSB  
##
