data_Q2J
# 
_chem_comp.id                                    Q2J 
_chem_comp.name                                  "3-{[(3-{6-amino-8-[(6-iodo-2H-1,3-benzodioxol-5-yl)sulfanyl]-9H-purin-9-yl}propyl)amino]methyl}benzene-1-sulfinic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H21 I N6 O4 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2019-09-10 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        624.474 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Q2J 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6U99 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Q2J C8   C1  C 0 1 N N N N N N 70.538 190.035 26.784 -2.871  0.490  -1.552 C8   Q2J 1  
Q2J C5   C2  C 0 1 Y N N N N N 71.058 194.966 23.771 3.216   -1.526 0.044  C5   Q2J 2  
Q2J C6   C3  C 0 1 N N N N N N 69.807 192.385 26.039 -0.535  1.309  -1.212 C6   Q2J 3  
Q2J N1   N1  N 0 1 Y N N N N N 66.945 192.812 27.030 0.137   3.758  0.713  N1   Q2J 4  
Q2J C2   C4  C 0 1 Y N N N N N 66.713 193.901 24.822 1.888   2.307  1.331  C2   Q2J 5  
Q2J N3   N2  N 0 1 Y N N N N N 67.517 194.171 23.765 2.315   1.067  0.984  N3   Q2J 6  
Q2J C4   C5  C 0 1 Y N N N N N 68.679 193.624 24.149 1.524   0.578  0.061  C4   Q2J 7  
Q2J O2   O1  O 0 1 N N N N N N 69.204 185.580 32.082 -10.052 -0.545 2.020  O2   Q2J 8  
Q2J N2   N3  N 0 1 Y N N N N N 68.718 193.064 25.361 0.541   1.484  -0.234 N2   Q2J 9  
Q2J N4   N4  N 0 1 N N N N N N 64.488 194.781 24.285 3.447   3.060  3.030  N4   Q2J 10 
Q2J C7   C6  C 0 1 N N N N N N 69.514 190.870 26.013 -1.747  0.673  -0.530 C7   Q2J 11 
Q2J C    C7  C 0 1 Y N N N N N 65.647 193.101 27.267 0.587   4.642  1.579  C    Q2J 12 
Q2J C1   C8  C 0 1 Y N N N N N 67.495 193.211 25.851 0.750   2.589  0.558  C1   Q2J 13 
Q2J C10  C9  C 0 1 Y N N N N N 70.409 186.460 28.087 -6.310  -0.939 -1.143 C10  Q2J 14 
Q2J C11  C10 C 0 1 Y N N N N N 70.491 185.426 27.159 -6.425  -2.315 -1.082 C11  Q2J 15 
Q2J C12  C11 C 0 1 Y N N N N N 69.968 184.177 27.472 -7.498  -2.890 -0.428 C12  Q2J 16 
Q2J C13  C12 C 0 1 Y N N N N N 69.368 183.955 28.710 -8.457  -2.089 0.164  C13  Q2J 17 
Q2J C14  C13 C 0 1 Y N N N N N 69.277 184.977 29.659 -8.342  -0.713 0.103  C14  Q2J 18 
Q2J C15  C14 C 0 1 Y N N N N N 69.795 186.232 29.322 -7.268  -0.138 -0.552 C15  Q2J 19 
Q2J C16  C15 C 0 1 Y N N N N N 70.452 196.105 24.322 3.208   -2.455 1.077  C16  Q2J 20 
Q2J C17  C16 C 0 1 Y N N N N N 71.262 197.125 24.823 4.401   -2.865 1.647  C17  Q2J 21 
Q2J C18  C17 C 0 1 Y N N N N N 72.701 197.002 24.781 5.608   -2.345 1.183  C18  Q2J 22 
Q2J C19  C18 C 0 1 Y N N N N N 73.317 195.893 24.259 5.611   -1.419 0.153  C19  Q2J 23 
Q2J C20  C19 C 0 1 Y N N N N N 72.551 194.849 23.735 4.420   -1.010 -0.416 C20  Q2J 24 
Q2J C21  C20 C 0 1 N N N N N N 72.177 199.029 25.675 6.010   -3.458 3.078  C21  Q2J 25 
Q2J C3   C21 C 0 1 Y N N N N N 65.300 194.154 25.164 2.330   3.282  2.241  C3   Q2J 26 
Q2J C9   C22 C 0 1 N N N N N N 70.977 187.829 27.725 -5.136  -0.312 -1.850 C9   Q2J 27 
Q2J I    I1  I 0 1 N N N N N N 73.614 193.184 22.937 4.431   0.391  -1.974 I    Q2J 28 
Q2J N    N5  N 0 1 Y N N N N N 64.864 193.743 26.375 1.653   4.422  2.327  N    Q2J 29 
Q2J N5   N6  N 0 1 N N N N N N 70.022 188.652 26.943 -4.035  -0.121 -0.897 N5   Q2J 30 
Q2J O    O2  O 0 1 N N N N N N 70.940 198.321 25.406 4.665   -3.748 2.654  O    Q2J 31 
Q2J O1   O3  O 0 1 N N N N N N 73.249 198.135 25.328 6.627   -2.903 1.901  O1   Q2J 32 
Q2J O3   O4  O 0 1 N N N N N N 68.770 183.354 31.514 -10.645 0.245  -0.062 O3   Q2J 33 
Q2J S    S1  S 0 1 N N N N N N 70.083 193.717 23.121 1.698   -1.008 -0.686 S    Q2J 34 
Q2J S1   S2  S 0 1 N N N N N N 68.599 184.721 31.108 -9.563  0.308  0.858  S1   Q2J 35 
Q2J H81  H1  H 0 1 N N N N N N 71.487 190.012 26.228 -3.151  1.461  -1.961 H81  Q2J 36 
Q2J H82  H2  H 0 1 N N N N N N 70.705 190.481 27.775 -2.526  -0.158 -2.359 H82  Q2J 37 
Q2J H62  H3  H 0 1 N N N N N N 70.755 192.591 25.521 -0.816  2.280  -1.621 H62  Q2J 38 
Q2J H61  H4  H 0 1 N N N N N N 69.874 192.734 27.080 -0.191  0.661  -2.019 H61  Q2J 39 
Q2J H1   H5  H 0 1 N N N N N N 69.582 185.054 32.777 -10.741 -0.126 2.553  H1   Q2J 40 
Q2J HN41 H6  H 0 0 N N N N N N 63.574 194.871 24.681 3.934   2.224  2.958  HN41 Q2J 41 
Q2J HN42 H7  H 0 0 N N N N N N 64.854 195.689 24.082 3.743   3.740  3.655  HN42 Q2J 42 
Q2J H71  H8  H 0 1 N N N N N N 68.522 190.700 26.457 -2.092  1.321  0.276  H71  Q2J 43 
Q2J H72  H9  H 0 1 N N N N N N 69.510 190.535 24.965 -1.467  -0.298 -0.121 H72  Q2J 44 
Q2J H    H10 H 0 1 N N N N N N 65.217 192.805 28.212 0.066   5.582  1.681  H    Q2J 45 
Q2J H11  H11 H 0 1 N N N N N N 70.959 185.593 26.200 -5.676  -2.941 -1.544 H11  Q2J 46 
Q2J H12  H12 H 0 1 N N N N N N 70.027 183.374 26.752 -7.589  -3.965 -0.380 H12  Q2J 47 
Q2J H13  H13 H 0 1 N N N N N N 68.967 182.979 28.940 -9.296  -2.538 0.674  H13  Q2J 48 
Q2J H15  H14 H 0 1 N N N N N N 69.719 187.043 30.032 -7.179  0.937  -0.600 H15  Q2J 49 
Q2J H16  H15 H 0 1 N N N N N N 69.376 196.191 24.358 2.272   -2.856 1.436  H16  Q2J 50 
Q2J H19  H16 H 0 1 N N N N N N 74.395 195.827 24.253 6.547   -1.016 -0.206 H19  Q2J 51 
Q2J H212 H17 H 0 0 N N N N N N 72.237 199.297 26.740 6.008   -2.729 3.888  H212 Q2J 52 
Q2J H211 H18 H 0 0 N N N N N N 72.232 199.942 25.064 6.520   -4.371 3.386  H211 Q2J 53 
Q2J H91  H19 H 0 1 N N N N N N 71.890 187.686 27.128 -4.807  -0.965 -2.659 H91  Q2J 54 
Q2J H92  H20 H 0 1 N N N N N N 71.226 188.364 28.653 -5.432  0.654  -2.261 H92  Q2J 55 
Q2J HN5  H21 H 0 1 N N N N N N 69.144 188.681 27.421 -3.785  -0.992 -0.454 HN5  Q2J 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Q2J I   C20  SING N N 1  
Q2J S   C5   SING N N 2  
Q2J S   C4   SING N N 3  
Q2J C20 C5   DOUB Y N 4  
Q2J C20 C19  SING Y N 5  
Q2J N3  C4   DOUB Y N 6  
Q2J N3  C2   SING Y N 7  
Q2J C5  C16  SING Y N 8  
Q2J C4  N2   SING Y N 9  
Q2J C19 C18  DOUB Y N 10 
Q2J N4  C3   SING N N 11 
Q2J C16 C17  DOUB Y N 12 
Q2J C18 C17  SING Y N 13 
Q2J C18 O1   SING N N 14 
Q2J C2  C3   DOUB Y N 15 
Q2J C2  C1   SING Y N 16 
Q2J C17 O    SING N N 17 
Q2J C3  N    SING Y N 18 
Q2J O1  C21  SING N N 19 
Q2J N2  C1   SING Y N 20 
Q2J N2  C6   SING N N 21 
Q2J O   C21  SING N N 22 
Q2J C1  N1   DOUB Y N 23 
Q2J C7  C6   SING N N 24 
Q2J C7  C8   SING N N 25 
Q2J N   C    DOUB Y N 26 
Q2J C8  N5   SING N N 27 
Q2J N5  C9   SING N N 28 
Q2J N1  C    SING Y N 29 
Q2J C11 C12  DOUB Y N 30 
Q2J C11 C10  SING Y N 31 
Q2J C12 C13  SING Y N 32 
Q2J C9  C10  SING N N 33 
Q2J C10 C15  DOUB Y N 34 
Q2J C13 C14  DOUB Y N 35 
Q2J C15 C14  SING Y N 36 
Q2J C14 S1   SING N N 37 
Q2J S1  O3   DOUB N N 38 
Q2J S1  O2   SING N N 39 
Q2J C8  H81  SING N N 40 
Q2J C8  H82  SING N N 41 
Q2J C6  H62  SING N N 42 
Q2J C6  H61  SING N N 43 
Q2J O2  H1   SING N N 44 
Q2J N4  HN41 SING N N 45 
Q2J N4  HN42 SING N N 46 
Q2J C7  H71  SING N N 47 
Q2J C7  H72  SING N N 48 
Q2J C   H    SING N N 49 
Q2J C11 H11  SING N N 50 
Q2J C12 H12  SING N N 51 
Q2J C13 H13  SING N N 52 
Q2J C15 H15  SING N N 53 
Q2J C16 H16  SING N N 54 
Q2J C19 H19  SING N N 55 
Q2J C21 H212 SING N N 56 
Q2J C21 H211 SING N N 57 
Q2J C9  H91  SING N N 58 
Q2J C9  H92  SING N N 59 
Q2J N5  HN5  SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Q2J SMILES           ACDLabs              12.01 "C(NCc1cc(ccc1)S(O)=O)CCn3c(nc2c(N)ncnc23)Sc5cc4OCOc4cc5I"                                                                                                                                      
Q2J InChI            InChI                1.03  "InChI=1S/C22H21IN6O4S2/c23-15-8-16-17(33-12-32-16)9-18(15)34-22-28-19-20(24)26-11-27-21(19)29(22)6-2-5-25-10-13-3-1-4-14(7-13)35(30)31/h1,3-4,7-9,11,25H,2,5-6,10,12H2,(H,30,31)(H2,24,26,27)" 
Q2J InChIKey         InChI                1.03  VMPXUKCASNDBMB-UHFFFAOYSA-N                                                                                                                                                                     
Q2J SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(CCCNCc3cccc(c3)[S](O)=O)c(Sc4cc5OCOc5cc4I)nc12"                                                                                                                                      
Q2J SMILES           CACTVS               3.385 "Nc1ncnc2n(CCCNCc3cccc(c3)[S](O)=O)c(Sc4cc5OCOc5cc4I)nc12"                                                                                                                                      
Q2J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)S(=O)O)CNCCCn2c3c(c(ncn3)N)nc2Sc4cc5c(cc4I)OCO5"                                                                                                                                    
Q2J SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)S(=O)O)CNCCCn2c3c(c(ncn3)N)nc2Sc4cc5c(cc4I)OCO5"                                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Q2J "SYSTEMATIC NAME" ACDLabs              12.01 "3-{[(3-{6-amino-8-[(6-iodo-2H-1,3-benzodioxol-5-yl)sulfanyl]-9H-purin-9-yl}propyl)amino]methyl}benzene-1-sulfinic acid" 
Q2J "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[[3-[6-azanyl-8-[(6-iodanyl-1,3-benzodioxol-5-yl)sulfanyl]purin-9-yl]propylamino]methyl]benzenesulfinic acid"         
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Q2J "Create component" 2019-09-10 RCSB 
Q2J "Initial release"  2020-02-19 RCSB 
Q2J "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            Q2J 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               S1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
