data_NOJ
# 
_chem_comp.id                                    NOJ 
_chem_comp.name                                  1-DEOXYNOJIRIMYCIN 
_chem_comp.type                                  D-saccharide 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C6 H13 N O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         MORANOLINE 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2024-08-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         DNJ 
_chem_comp.formula_weight                        163.172 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     NOJ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1DOG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
NOJ C1  C1  C 0 1 N N N N N N 31.502 17.462 4.219  -0.567 -1.798 -0.192 C1  NOJ 1  
NOJ C2  C2  C 0 1 N N S N N N 32.509 17.825 5.325  -1.616 -0.787 0.276  C2  NOJ 2  
NOJ O2  O2  O 0 1 N N N N N N 31.817 18.616 6.325  -2.899 -1.162 -0.231 O2  NOJ 3  
NOJ C3  C3  C 0 1 N N R N N N 33.716 18.643 4.860  -1.246 0.604  -0.247 C3  NOJ 4  
NOJ O3  O3  O 0 1 N N N N N N 34.814 18.602 5.795  -2.191 1.562  0.234  O3  NOJ 5  
NOJ C4  C4  C 0 1 N N R N N N 34.228 18.111 3.507  0.154  0.972  0.252  C4  NOJ 6  
NOJ O4  O4  O 0 1 N N N N N N 35.335 18.918 3.067  0.530  2.245  -0.278 O4  NOJ 7  
NOJ C5  C5  C 0 1 N N R N N N 33.091 18.162 2.473  1.152  -0.090 -0.215 C5  NOJ 8  
NOJ N5  N5  N 0 1 N N N N N N 31.959 17.453 2.914  0.755  -1.402 0.311  N5  NOJ 9  
NOJ C6  C6  C 0 1 N N N N N N 33.518 17.562 1.100  2.550  0.263  0.298  C6  NOJ 10 
NOJ O6  O6  O 0 1 N N N N N N 33.243 18.503 0.046  3.500  -0.663 -0.234 O6  NOJ 11 
NOJ H11 H11 H 0 1 N N N N N N 31.141 16.446 4.437  -0.820 -2.787 0.191  H11 NOJ 12 
NOJ H12 H12 H 0 1 N N N N N N 30.693 18.205 4.268  -0.548 -1.824 -1.281 H12 NOJ 13 
NOJ H2  H2  H 0 1 N N N N N N 32.898 16.868 5.703  -1.646 -0.771 1.365  H2  NOJ 14 
NOJ HO2 HO2 H 0 1 N N N N N N 32.423 18.851 7.018  -3.196 -2.035 0.058  HO2 NOJ 15 
NOJ H3  H3  H 0 1 N N N N N N 33.367 19.683 4.775  -1.256 0.598  -1.337 H3  NOJ 16 
NOJ HO3 HO3 H 0 1 N N N N N N 35.535 19.123 5.461  -3.102 1.387  -0.040 HO3 NOJ 17 
NOJ H4  H4  H 0 1 N N N N N N 34.563 17.069 3.618  0.153  1.017  1.341  H4  NOJ 18 
NOJ HO4 HO4 H 0 1 N N N N N N 35.653 18.593 2.233  -0.062 2.966  -0.024 HO4 NOJ 19 
NOJ H5  H5  H 0 1 N N N N N N 32.850 19.228 2.352  1.163  -0.124 -1.305 H5  NOJ 20 
NOJ HN5 HN5 H 0 1 N N N N N N 32.165 16.494 2.720  0.774  -1.408 1.320  HN5 NOJ 21 
NOJ H61 H61 H 0 1 N N N N N N 34.595 17.341 1.119  2.809  1.273  -0.020 H61 NOJ 22 
NOJ H62 H62 H 0 1 N N N N N N 32.954 16.635 0.917  2.561  0.211  1.386  H62 NOJ 23 
NOJ HO6 HO6 H 0 1 N N N N N N 33.506 18.131 -0.788 4.410  -0.499 0.050  HO6 NOJ 24 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
NOJ C1 C2  SING N N 1  
NOJ C1 N5  SING N N 2  
NOJ C1 H11 SING N N 3  
NOJ C1 H12 SING N N 4  
NOJ C2 O2  SING N N 5  
NOJ C2 C3  SING N N 6  
NOJ C2 H2  SING N N 7  
NOJ O2 HO2 SING N N 8  
NOJ C3 O3  SING N N 9  
NOJ C3 C4  SING N N 10 
NOJ C3 H3  SING N N 11 
NOJ O3 HO3 SING N N 12 
NOJ C4 O4  SING N N 13 
NOJ C4 C5  SING N N 14 
NOJ C4 H4  SING N N 15 
NOJ O4 HO4 SING N N 16 
NOJ C5 N5  SING N N 17 
NOJ C5 C6  SING N N 18 
NOJ C5 H5  SING N N 19 
NOJ N5 HN5 SING N N 20 
NOJ C6 O6  SING N N 21 
NOJ C6 H61 SING N N 22 
NOJ C6 H62 SING N N 23 
NOJ O6 HO6 SING N N 24 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
NOJ SMILES           ACDLabs              12.01 "OC1C(NCC(O)C1O)CO"                                                            
NOJ SMILES_CANONICAL CACTVS               3.370 "OC[C@H]1NC[C@H](O)[C@@H](O)[C@@H]1O"                                          
NOJ SMILES           CACTVS               3.370 "OC[CH]1NC[CH](O)[CH](O)[CH]1O"                                                
NOJ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C1[C@@H]([C@H]([C@@H]([C@H](N1)CO)O)O)O"                                      
NOJ SMILES           "OpenEye OEToolkits" 1.7.0 "C1C(C(C(C(N1)CO)O)O)O"                                                        
NOJ InChI            InChI                1.03  "InChI=1S/C6H13NO4/c8-2-3-5(10)6(11)4(9)1-7-3/h3-11H,1-2H2/t3-,4+,5-,6-/m1/s1" 
NOJ InChIKey         InChI                1.03  LXBIFEVIBLOUGU-JGWLITMVSA-N                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
NOJ "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,3R,4R,5S)-2-(hydroxymethyl)piperidine-3,4,5-triol" 
NOJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2R,3R,4R,5S)-2-(hydroxymethyl)piperidine-3,4,5-triol" 
# 
loop_
_pdbx_chem_comp_feature.comp_id 
_pdbx_chem_comp_feature.type 
_pdbx_chem_comp_feature.value 
_pdbx_chem_comp_feature.source 
_pdbx_chem_comp_feature.support 
NOJ "CARBOHYDRATE ISOMER" D        PDB ? 
NOJ "CARBOHYDRATE RING"   pyranose PDB ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
NOJ "Create component"   1999-07-08 RCSB 
NOJ "Modify descriptor"  2011-06-04 RCSB 
NOJ "Modify synonyms"    2021-03-01 PDBE 
NOJ "Other modification" 2024-08-16 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      NOJ 
_pdbx_chem_comp_synonyms.name         MORANOLINE 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
