data_NDJ
# 
_chem_comp.id                                    NDJ 
_chem_comp.name                                  "(2R,3S,4R,5S)-N-butyl-3,4,5-trihydroxy-2-(hydroxymethyl)piperidine-1-carbothioamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H22 N2 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-07-26 
_chem_comp.pdbx_modified_date                    2014-04-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        278.368 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     NDJ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3WF2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
NDJ O2  O2  O 0 1 N N N -2.707  -21.231 4.254  -2.276 3.170  0.644  O2  NDJ 1  
NDJ C2  C2  C 0 1 N N S -3.595  -21.165 5.388  -1.947 1.874  0.138  C2  NDJ 2  
NDJ C3  C3  C 0 1 N N R -2.764  -21.113 6.695  -3.193 0.985  0.163  C3  NDJ 3  
NDJ O3  O3  O 0 1 N N N -2.089  -19.860 6.835  -4.222 1.586  -0.627 O3  NDJ 4  
NDJ C1  C1  C 0 1 N N N -4.553  -22.390 5.320  -0.859 1.244  1.013  C1  NDJ 5  
NDJ N5  N5  N 0 1 N N N -5.391  -22.312 6.509  -0.626 -0.134 0.560  N5  NDJ 6  
NDJ C5  C5  C 0 1 N N R -4.524  -22.628 7.703  -1.772 -1.048 0.460  C5  NDJ 7  
NDJ C6  C6  C 0 1 N N N -5.267  -22.816 9.024  -1.325 -2.362 -0.182 C6  NDJ 8  
NDJ O6  O6  O 0 1 N N N -4.410  -23.015 10.198 -0.696 -3.184 0.803  O6  NDJ 9  
NDJ C4  C4  C 0 1 N N S -3.658  -21.359 7.884  -2.850 -0.392 -0.409 C4  NDJ 10 
NDJ O4  O4  O 0 1 N N N -4.560  -20.230 8.072  -2.363 -0.247 -1.745 O4  NDJ 11 
NDJ C7  C7  C 0 1 N N N -6.710  -21.842 6.441  0.615  -0.552 0.242  C7  NDJ 12 
NDJ N8  N8  N 0 1 N N N -7.172  -20.994 7.412  1.628  0.335  0.172  N8  NDJ 13 
NDJ S7  S7  S 0 1 N N N -7.738  -22.198 5.224  0.906  -2.209 -0.072 S7  NDJ 14 
NDJ C9  C9  C 0 1 N N N -8.540  -20.473 7.518  2.998  -0.133 -0.047 C9  NDJ 15 
NDJ C10 C10 C 0 1 N N N -9.292  -21.081 8.710  3.947  1.066  -0.086 C10 NDJ 16 
NDJ C11 C11 C 0 1 N N N -10.693 -20.497 8.905  5.379  0.577  -0.315 C11 NDJ 17 
NDJ C12 C12 C 0 1 N N N -11.367 -21.015 10.169 6.328  1.776  -0.354 C12 NDJ 18 
NDJ H1  H1  H 0 1 N N N -2.111  -20.491 4.274  -1.531 3.787  0.657  H1  NDJ 19 
NDJ H2  H2  H 0 1 N N N -4.203  -20.250 5.330  -1.585 1.964  -0.886 H2  NDJ 20 
NDJ H3  H3  H 0 1 N N N -2.020  -21.922 6.651  -3.541 0.876  1.190  H3  NDJ 21 
NDJ H4  H4  H 0 1 N N N -1.589  -19.858 7.643  -4.491 2.463  -0.321 H4  NDJ 22 
NDJ H5  H5  H 0 1 N N N -5.172  -22.341 4.412  0.062  1.820  0.921  H5  NDJ 23 
NDJ H6  H6  H 0 1 N N N -3.976  -23.327 5.320  -1.185 1.237  2.053  H6  NDJ 24 
NDJ H7  H7  H 0 1 N N N -3.882  -23.498 7.497  -2.173 -1.242 1.455  H7  NDJ 25 
NDJ H8  H8  H 0 1 N N N -5.882  -21.921 9.199  -2.193 -2.882 -0.588 H8  NDJ 26 
NDJ H9  H9  H 0 1 N N N -5.920  -23.696 8.926  -0.619 -2.153 -0.985 H9  NDJ 27 
NDJ H10 H10 H 0 1 N N N -4.951  -23.123 10.971 -0.388 -4.037 0.467  H10 NDJ 28 
NDJ H11 H11 H 0 1 N N N -3.034  -21.488 8.781  -3.744 -1.017 -0.413 H11 NDJ 29 
NDJ H12 H12 H 0 1 N N N -5.119  -20.393 8.822  -2.995 0.164  -2.351 H12 NDJ 30 
NDJ H13 H13 H 0 1 N N N -6.519  -20.704 8.111  1.449  1.284  0.267  H13 NDJ 31 
NDJ H14 H14 H 0 1 N N N -8.496  -19.381 7.644  3.288  -0.800 0.765  H14 NDJ 32 
NDJ H15 H15 H 0 1 N N N -9.085  -20.714 6.593  3.052  -0.670 -0.995 H15 NDJ 33 
NDJ H16 H16 H 0 1 N N N -9.385  -22.165 8.548  3.657  1.733  -0.898 H16 NDJ 34 
NDJ H17 H17 H 0 1 N N N -8.707  -20.896 9.623  3.894  1.602  0.862  H17 NDJ 35 
NDJ H18 H18 H 0 1 N N N -10.613 -19.402 8.971  5.669  -0.090 0.497  H18 NDJ 36 
NDJ H19 H19 H 0 1 N N N -11.313 -20.768 8.038  5.432  0.041  -1.262 H19 NDJ 37 
NDJ H20 H20 H 0 1 N N N -12.367 -20.567 10.262 6.038  2.443  -1.165 H20 NDJ 38 
NDJ H21 H21 H 0 1 N N N -11.460 -22.110 10.113 6.274  2.312  0.594  H21 NDJ 39 
NDJ H22 H22 H 0 1 N N N -10.760 -20.743 11.046 7.347  1.428  -0.517 H22 NDJ 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
NDJ O2  C2  SING N N 1  
NDJ S7  C7  DOUB N N 2  
NDJ C1  C2  SING N N 3  
NDJ C1  N5  SING N N 4  
NDJ C2  C3  SING N N 5  
NDJ C7  N5  SING N N 6  
NDJ C7  N8  SING N N 7  
NDJ N5  C5  SING N N 8  
NDJ C3  O3  SING N N 9  
NDJ C3  C4  SING N N 10 
NDJ N8  C9  SING N N 11 
NDJ C9  C10 SING N N 12 
NDJ C5  C4  SING N N 13 
NDJ C5  C6  SING N N 14 
NDJ C4  O4  SING N N 15 
NDJ C10 C11 SING N N 16 
NDJ C11 C12 SING N N 17 
NDJ C6  O6  SING N N 18 
NDJ O2  H1  SING N N 19 
NDJ C2  H2  SING N N 20 
NDJ C3  H3  SING N N 21 
NDJ O3  H4  SING N N 22 
NDJ C1  H5  SING N N 23 
NDJ C1  H6  SING N N 24 
NDJ C5  H7  SING N N 25 
NDJ C6  H8  SING N N 26 
NDJ C6  H9  SING N N 27 
NDJ O6  H10 SING N N 28 
NDJ C4  H11 SING N N 29 
NDJ O4  H12 SING N N 30 
NDJ N8  H13 SING N N 31 
NDJ C9  H14 SING N N 32 
NDJ C9  H15 SING N N 33 
NDJ C10 H16 SING N N 34 
NDJ C10 H17 SING N N 35 
NDJ C11 H18 SING N N 36 
NDJ C11 H19 SING N N 37 
NDJ C12 H20 SING N N 38 
NDJ C12 H21 SING N N 39 
NDJ C12 H22 SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
NDJ SMILES           ACDLabs              12.01 "S=C(NCCCC)N1C(C(O)C(O)C(O)C1)CO"                                                                                            
NDJ InChI            InChI                1.03  "InChI=1S/C11H22N2O4S/c1-2-3-4-12-11(18)13-5-8(15)10(17)9(16)7(13)6-14/h7-10,14-17H,2-6H2,1H3,(H,12,18)/t7-,8+,9+,10-/m1/s1" 
NDJ InChIKey         InChI                1.03  VCRXDLDGTLMSHK-XFWSIPNHSA-N                                                                                                  
NDJ SMILES_CANONICAL CACTVS               3.385 "CCCCNC(=S)N1C[C@H](O)[C@@H](O)[C@@H](O)[C@H]1CO"                                                                            
NDJ SMILES           CACTVS               3.385 "CCCCNC(=S)N1C[CH](O)[CH](O)[CH](O)[CH]1CO"                                                                                  
NDJ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCCNC(=S)N1C[C@@H]([C@H]([C@H]([C@H]1CO)O)O)O"                                                                             
NDJ SMILES           "OpenEye OEToolkits" 1.7.6 "CCCCNC(=S)N1CC(C(C(C1CO)O)O)O"                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
NDJ "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,3S,4R,5S)-N-butyl-3,4,5-trihydroxy-2-(hydroxymethyl)piperidine-1-carbothioamide"     
NDJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,3S,4R,5S)-N-butyl-2-(hydroxymethyl)-3,4,5-tris(oxidanyl)piperidine-1-carbothioamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
NDJ "Create component" 2013-07-26 PDBJ 
NDJ "Initial release"  2014-04-16 RCSB 
# 
