data_MIJ
# 
_chem_comp.id                                    MIJ 
_chem_comp.name                                  "(2~{R},3~{S})-3-[[(2~{S})-3-cyclopropyl-2-[2-oxidanylidene-3-(2-phenylethanoylamino)pyridin-1-yl]propanoyl]amino]-~{N}-methyl-2-oxidanyl-4-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H35 N5 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-07-27 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        537.607 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     MIJ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8AIZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
MIJ N1  N1  N 0 1 N N N N N N -15.748 -21.598 -0.513 4.206  1.868  -0.395 N1  MIJ 1  
MIJ N3  N2  N 0 1 N N N N N N -14.022 -27.368 1.385  -2.515 0.041  0.509  N3  MIJ 2  
MIJ C4  C1  C 0 1 Y N N N N N -14.343 -17.527 0.148  6.414  -1.849 -1.707 C4  MIJ 3  
MIJ C5  C2  C 0 1 Y N N N N N -15.405 -17.898 -0.671 6.202  -1.279 -0.465 C5  MIJ 4  
MIJ C6  C3  C 0 1 Y N N N N N -15.803 -17.026 -1.675 6.136  -2.079 0.660  C6  MIJ 5  
MIJ C7  C4  C 0 1 N N N N N N -16.103 -19.221 -0.478 6.044  0.214  -0.339 C7  MIJ 6  
MIJ C8  C5  C 0 1 N N N N N N -15.238 -20.404 -0.877 4.588  0.578  -0.475 C8  MIJ 7  
MIJ C10 C6  C 0 1 N N N N N N -15.730 -23.953 -0.341 1.845  1.671  0.195  C10 MIJ 8  
MIJ C13 C7  C 0 1 N N N N N N -15.678 -22.987 -2.573 2.532  3.091  -1.612 C13 MIJ 9  
MIJ C15 C8  C 0 1 N N N N N N -14.280 -26.780 0.215  -1.457 0.660  -0.050 C15 MIJ 10 
MIJ C17 C9  C 0 1 N N R N N N -12.965 -29.492 1.806  -4.500 0.242  -0.905 C17 MIJ 11 
MIJ C20 C10 C 0 1 N N N N N N -17.915 -27.105 -0.975 -0.295 3.266  2.501  C20 MIJ 12 
MIJ C21 C11 C 0 1 N N N N N N -18.961 -27.158 0.086  -0.887 4.349  3.405  C21 MIJ 13 
MIJ C22 C12 C 0 1 N N N N N N -19.015 -28.115 -1.062 0.019  4.739  2.234  C22 MIJ 14 
MIJ C24 C13 C 0 1 N N S N N N -11.728 -25.857 2.608  -3.118 -2.831 0.951  C24 MIJ 15 
MIJ C26 C14 C 0 1 N N N N N N -9.788  -24.469 2.067  -3.588 -3.435 3.224  C26 MIJ 16 
MIJ C28 C15 C 0 1 N N N N N N -10.600 -32.090 0.433  -6.194 -0.877 -4.149 C28 MIJ 17 
MIJ C1  C16 C 0 1 Y N N N N N -15.152 -15.813 -1.858 6.282  -3.449 0.544  C1  MIJ 18 
MIJ C2  C17 C 0 1 Y N N N N N -14.100 -15.456 -1.037 6.493  -4.019 -0.697 C2  MIJ 19 
MIJ C3  C18 C 0 1 Y N N N N N -13.690 -16.314 -0.040 6.552  -3.220 -1.824 C3  MIJ 20 
MIJ O1  O1  O 0 1 N N N N N N -14.169 -20.286 -1.469 3.760  -0.289 -0.656 O1  MIJ 21 
MIJ C9  C19 C 0 1 N N N N N N -15.697 -22.843 -1.185 2.866  2.217  -0.613 C9  MIJ 22 
MIJ N2  N3  N 0 1 N N N N N N -15.717 -25.194 -0.951 0.560  2.009  -0.026 N2  MIJ 23 
MIJ C11 C20 C 0 1 N N N N N N -15.635 -25.336 -2.311 0.230  2.877  -1.019 C11 MIJ 24 
MIJ C12 C21 C 0 1 N N N N N N -15.632 -24.263 -3.123 1.184  3.423  -1.809 C12 MIJ 25 
MIJ O2  O2  O 0 1 N N N N N N -15.761 -23.910 0.879  2.126  0.890  1.090  O2  MIJ 26 
MIJ C14 C22 C 0 1 N N S N N N -15.710 -26.378 -0.081 -0.494 1.435  0.813  C14 MIJ 27 
MIJ C16 C23 C 0 1 N N S N N N -12.734 -27.970 1.700  -3.451 -0.712 -0.330 C16 MIJ 28 
MIJ C18 C24 C 0 1 N N N N N N -11.695 -30.310 1.675  -5.369 -0.501 -1.887 C18 MIJ 29 
MIJ N4  N4  N 0 1 N N N N N N -11.652 -31.112 0.625  -5.274 -0.237 -3.205 N4  MIJ 30 
MIJ C19 C25 C 0 1 N N N N N N -16.511 -27.534 -0.667 -1.244 2.559  1.531  C19 MIJ 31 
MIJ O3  O3  O 0 1 N N N N N N -13.410 -26.572 -0.623 -1.280 0.595  -1.248 O3  MIJ 32 
MIJ C23 C26 C 0 1 N N N N N N -12.113 -27.305 2.926  -4.144 -1.783 0.514  C23 MIJ 33 
MIJ O4  O4  O 0 1 N N N N N N -13.855 -29.873 0.757  -3.846 1.323  -1.572 O4  MIJ 34 
MIJ O5  O5  O 0 1 N N N N N N -10.793 -30.208 2.514  -6.154 -1.337 -1.491 O5  MIJ 35 
MIJ C25 C27 C 0 1 N N N N N N -10.626 -25.669 1.568  -3.800 -3.944 1.781  C25 MIJ 36 
MIJ N5  N5  N 0 1 N N N N N N -10.186 -24.323 3.461  -2.395 -2.581 3.167  N5  MIJ 37 
MIJ C27 C28 C 0 1 N N N N N N -11.229 -25.072 3.810  -2.112 -2.223 1.902  C27 MIJ 38 
MIJ O6  O6  O 0 1 N N N N N N -11.730 -25.115 4.932  -1.184 -1.515 1.573  O6  MIJ 39 
MIJ H1  H1  H 0 1 N N N N N N -16.234 -21.605 0.361  4.857  2.555  -0.182 H1  MIJ 40 
MIJ H2  H2  H 0 1 N N N N N N -14.745 -27.396 2.076  -2.657 0.093  1.467  H2  MIJ 41 
MIJ H3  H3  H 0 1 N N N N N N -14.022 -18.189 0.939  6.466  -1.224 -2.586 H3  MIJ 42 
MIJ H4  H4  H 0 1 N N N N N N -16.627 -17.293 -2.320 5.971  -1.633 1.630  H4  MIJ 43 
MIJ H5  H5  H 0 1 N N N N N N -17.016 -19.230 -1.091 6.410  0.537  0.635  H5  MIJ 44 
MIJ H6  H6  H 0 1 N N N N N N -16.373 -19.325 0.583  6.617  0.708  -1.124 H6  MIJ 45 
MIJ H7  H7  H 0 1 N N N N N N -15.699 -22.117 -3.213 3.298  3.520  -2.241 H7  MIJ 46 
MIJ H8  H8  H 0 1 N N N N N N -13.423 -29.706 2.783  -5.118 0.633  -0.097 H8  MIJ 47 
MIJ H9  H9  H 0 1 N N N N N N -18.001 -26.261 -1.675 0.503  2.648  2.913  H9  MIJ 48 
MIJ H10 H10 H 0 1 N N N N N N -19.705 -26.352 0.165  -1.952 4.558  3.308  H10 MIJ 49 
MIJ H11 H11 H 0 1 N N N N N N -18.705 -27.521 1.092  -0.478 4.444  4.411  H11 MIJ 50 
MIJ H12 H12 H 0 1 N N N N N N -19.798 -28.012 -1.828 1.023  5.091  2.471  H12 MIJ 51 
MIJ H13 H13 H 0 1 N N N N N N -18.798 -29.181 -0.901 -0.451 5.205  1.368  H13 MIJ 52 
MIJ H14 H14 H 0 1 N N N N N N -12.629 -25.351 2.231  -2.614 -3.255 0.082  H14 MIJ 53 
MIJ H15 H15 H 0 1 N N N N N N -8.712  -24.682 1.987  -4.451 -2.855 3.551  H15 MIJ 54 
MIJ H16 H16 H 0 1 N N N N N N -10.025 -23.560 1.494  -3.419 -4.273 3.900  H16 MIJ 55 
MIJ H17 H17 H 0 1 N N N N N N -10.774 -32.637 -0.505 -6.082 -1.960 -4.088 H17 MIJ 56 
MIJ H18 H18 H 0 1 N N N N N N -9.628  -31.578 0.383  -7.219 -0.604 -3.899 H18 MIJ 57 
MIJ H19 H19 H 0 1 N N N N N N -10.599 -32.797 1.275  -5.966 -0.544 -5.161 H19 MIJ 58 
MIJ H20 H20 H 0 1 N N N N N N -15.470 -15.146 -2.646 6.231  -4.073 1.424  H20 MIJ 59 
MIJ H21 H21 H 0 1 N N N N N N -13.601 -14.508 -1.176 6.607  -5.089 -0.788 H21 MIJ 60 
MIJ H22 H22 H 0 1 N N N N N N -12.860 -16.044 0.596  6.717  -3.665 -2.793 H22 MIJ 61 
MIJ H23 H23 H 0 1 N N N N N N -15.572 -26.326 -2.739 -0.806 3.135  -1.180 H23 MIJ 62 
MIJ H24 H24 H 0 1 N N N N N N -15.594 -24.392 -4.195 0.907  4.111  -2.593 H24 MIJ 63 
MIJ H25 H25 H 0 1 N N N N N N -16.181 -26.102 0.874  -0.049 0.766  1.549  H25 MIJ 64 
MIJ H26 H26 H 0 1 N N N N N N -12.055 -27.800 0.852  -2.906 -1.188 -1.145 H26 MIJ 65 
MIJ H27 H27 H 0 1 N N N N N N -12.374 -31.041 -0.064 -4.596 0.376  -3.529 H27 MIJ 66 
MIJ H28 H28 H 0 1 N N N N N N -16.537 -28.360 0.059  -2.083 2.139  2.085  H28 MIJ 67 
MIJ H29 H29 H 0 1 N N N N N N -16.027 -27.876 -1.594 -1.614 3.275  0.798  H29 MIJ 68 
MIJ H30 H30 H 0 1 N N N N N N -12.840 -27.314 3.751  -4.924 -2.263 -0.077 H30 MIJ 69 
MIJ H31 H31 H 0 1 N N N N N N -11.213 -27.863 3.224  -4.588 -1.321 1.395  H31 MIJ 70 
MIJ H32 H32 H 0 1 N N N N N N -14.658 -29.369 0.824  -3.269 1.847  -0.999 H32 MIJ 71 
MIJ H33 H33 H 0 1 N N N N N N -11.061 -25.450 0.582  -4.862 -4.012 1.544  H33 MIJ 72 
MIJ H34 H34 H 0 1 N N N N N N -10.002 -26.572 1.501  -3.306 -4.903 1.628  H34 MIJ 73 
MIJ H35 H35 H 0 1 N N N N N N -9.716  -23.713 4.100  -1.878 -2.310 3.941  H35 MIJ 74 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
MIJ C12 C13 SING N N 1  
MIJ C12 C11 DOUB N N 2  
MIJ C13 C9  DOUB N N 3  
MIJ C11 N2  SING N N 4  
MIJ C1  C6  DOUB Y N 5  
MIJ C1  C2  SING Y N 6  
MIJ C6  C5  SING Y N 7  
MIJ O1  C8  DOUB N N 8  
MIJ C9  N1  SING N N 9  
MIJ C9  C10 SING N N 10 
MIJ C22 C20 SING N N 11 
MIJ C22 C21 SING N N 12 
MIJ C2  C3  DOUB Y N 13 
MIJ C20 C19 SING N N 14 
MIJ C20 C21 SING N N 15 
MIJ N2  C10 SING N N 16 
MIJ N2  C14 SING N N 17 
MIJ C8  N1  SING N N 18 
MIJ C8  C7  SING N N 19 
MIJ C5  C7  SING N N 20 
MIJ C5  C4  DOUB Y N 21 
MIJ C19 C14 SING N N 22 
MIJ O3  C15 DOUB N N 23 
MIJ C10 O2  DOUB N N 24 
MIJ C14 C15 SING N N 25 
MIJ C3  C4  SING Y N 26 
MIJ C15 N3  SING N N 27 
MIJ C28 N4  SING N N 28 
MIJ N4  C18 SING N N 29 
MIJ O4  C17 SING N N 30 
MIJ N3  C16 SING N N 31 
MIJ C25 C26 SING N N 32 
MIJ C25 C24 SING N N 33 
MIJ C18 C17 SING N N 34 
MIJ C18 O5  DOUB N N 35 
MIJ C16 C17 SING N N 36 
MIJ C16 C23 SING N N 37 
MIJ C26 N5  SING N N 38 
MIJ C24 C23 SING N N 39 
MIJ C24 C27 SING N N 40 
MIJ N5  C27 SING N N 41 
MIJ C27 O6  DOUB N N 42 
MIJ N1  H1  SING N N 43 
MIJ N3  H2  SING N N 44 
MIJ C4  H3  SING N N 45 
MIJ C6  H4  SING N N 46 
MIJ C7  H5  SING N N 47 
MIJ C7  H6  SING N N 48 
MIJ C13 H7  SING N N 49 
MIJ C17 H8  SING N N 50 
MIJ C20 H9  SING N N 51 
MIJ C21 H10 SING N N 52 
MIJ C21 H11 SING N N 53 
MIJ C22 H12 SING N N 54 
MIJ C22 H13 SING N N 55 
MIJ C24 H14 SING N N 56 
MIJ C26 H15 SING N N 57 
MIJ C26 H16 SING N N 58 
MIJ C28 H17 SING N N 59 
MIJ C28 H18 SING N N 60 
MIJ C28 H19 SING N N 61 
MIJ C1  H20 SING N N 62 
MIJ C2  H21 SING N N 63 
MIJ C3  H22 SING N N 64 
MIJ C11 H23 SING N N 65 
MIJ C12 H24 SING N N 66 
MIJ C14 H25 SING N N 67 
MIJ C16 H26 SING N N 68 
MIJ N4  H27 SING N N 69 
MIJ C19 H28 SING N N 70 
MIJ C19 H29 SING N N 71 
MIJ C23 H30 SING N N 72 
MIJ C23 H31 SING N N 73 
MIJ O4  H32 SING N N 74 
MIJ C25 H33 SING N N 75 
MIJ C25 H34 SING N N 76 
MIJ N5  H35 SING N N 77 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
MIJ InChI            InChI                1.06  "InChI=1S/C28H35N5O6/c1-29-27(38)24(35)21(16-19-11-12-30-25(19)36)32-26(37)22(14-18-9-10-18)33-13-5-8-20(28(33)39)31-23(34)15-17-6-3-2-4-7-17/h2-8,13,18-19,21-22,24,35H,9-12,14-16H2,1H3,(H,29,38)(H,30,36)(H,31,34)(H,32,37)/t19-,21-,22-,24+/m0/s1" 
MIJ InChIKey         InChI                1.06  QZDBNMWKNRLEHS-NRTAZHGZSA-N                                                                                                                                                                                                                            
MIJ SMILES_CANONICAL CACTVS               3.385 "CNC(=O)[C@H](O)[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC2CC2)N3C=CC=C(NC(=O)Cc4ccccc4)C3=O"                                                                                                                                                                
MIJ SMILES           CACTVS               3.385 "CNC(=O)[CH](O)[CH](C[CH]1CCNC1=O)NC(=O)[CH](CC2CC2)N3C=CC=C(NC(=O)Cc4ccccc4)C3=O"                                                                                                                                                                     
MIJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC(=O)[C@@H]([C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC2CC2)N3C=CC=C(C3=O)NC(=O)Cc4ccccc4)O"                                                                                                                                                               
MIJ SMILES           "OpenEye OEToolkits" 2.0.7 "CNC(=O)C(C(CC1CCNC1=O)NC(=O)C(CC2CC2)N3C=CC=C(C3=O)NC(=O)Cc4ccccc4)O"                                                                                                                                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           MIJ 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R},3~{S})-3-[[(2~{S})-3-cyclopropyl-2-[2-oxidanylidene-3-(2-phenylethanoylamino)pyridin-1-yl]propanoyl]amino]-~{N}-methyl-2-oxidanyl-4-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
MIJ "Create component"  2022-07-27 PDBE 
MIJ "Initial release"   2023-08-16 RCSB 
MIJ "Modify descriptor" 2023-09-23 RCSB 
MIJ "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            MIJ 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C17 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
