data_L1J
# 
_chem_comp.id                                    L1J 
_chem_comp.name                                  "2-azanyl-9-[(2~{R},4~{S},5~{R})-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]-1~{H}-purin-6-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H13 N5 O4" 
_chem_comp.mon_nstd_parent_comp_id               G 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-06-09 
_chem_comp.pdbx_modified_date                    2022-08-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        267.241 
_chem_comp.one_letter_code                       G 
_chem_comp.three_letter_code                     L1J 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZEO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
L1J "O5'"  O1  O 0 1 N N N 20.893 26.853 20.311 -4.901 1.330  -1.387 "O5'"  L1J 1  
L1J "C5'"  C1  C 0 1 N N N 20.520 27.924 19.449 -4.530 0.774  -0.124 "C5'"  L1J 2  
L1J "C4'"  C2  C 0 1 N N R 21.710 28.570 18.715 -3.397 -0.234 -0.322 "C4'"  L1J 3  
L1J "O4'"  O2  O 0 1 N N N 22.580 29.145 19.684 -2.195 0.433  -0.765 "O4'"  L1J 4  
L1J "C1'"  C3  C 0 1 N N R 23.887 28.648 19.460 -1.093 -0.433 -0.446 "C1'"  L1J 5  
L1J N9     N1  N 0 1 Y N N 24.665 28.583 20.714 0.081  0.367  -0.089 N9     L1J 6  
L1J C8     C4  C 0 1 Y N N 25.820 29.260 21.017 0.072  1.649  0.380  C8     L1J 7  
L1J N7     N2  N 0 1 Y N N 26.328 28.962 22.183 1.292  2.049  0.594  N7     L1J 8  
L1J C5     C5  C 0 1 Y N N 25.415 28.039 22.706 2.153  1.052  0.275  C5     L1J 9  
L1J C4     C6  C 0 1 Y N N 24.370 27.832 21.834 1.387  -0.036 -0.159 C4     L1J 10 
L1J N3     N3  N 0 1 N N N 23.289 27.017 22.033 1.995  -1.168 -0.533 N3     L1J 11 
L1J C2     C7  C 0 1 N N N 23.336 26.361 23.187 3.304  -1.279 -0.498 C2     L1J 12 
L1J N1     N4  N 0 1 N N N 24.338 26.462 24.097 4.103  -0.257 -0.082 N1     L1J 13 
L1J C6     C8  C 0 1 N N N 25.417 27.309 23.942 3.561  0.920  0.304  C6     L1J 14 
L1J O6     O3  O 0 1 N N N 26.259 27.342 24.836 4.267  1.840  0.680  O6     L1J 15 
L1J N2     N5  N 0 1 N N N 22.312 25.604 23.462 3.883  -2.460 -0.891 N2     L1J 16 
L1J "C2'"  C9  C 0 1 N N N 23.711 27.289 18.788 -1.523 -1.298 0.755  "C2'"  L1J 17 
L1J "C3'"  C10 C 0 1 N N S 22.535 27.586 17.860 -2.983 -0.863 1.032  "C3'"  L1J 18 
L1J "O3'"  O4  O 0 1 N N N 22.928 28.222 16.644 -3.801 -1.994 1.341  "O3'"  L1J 19 
L1J "HO5'" H1  H 0 0 N N N 20.118 26.500 20.731 -5.616 1.979  -1.337 "HO5'" L1J 20 
L1J "H5'2" H2  H 0 0 N N N 20.022 28.698 20.052 -4.195 1.572  0.540  "H5'2" L1J 21 
L1J "H5'1" H3  H 0 0 N N N 19.817 27.536 18.697 -5.391 0.271  0.318  "H5'1" L1J 22 
L1J "H4'"  H4  H 0 1 N N N 21.319 29.356 18.052 -3.692 -1.006 -1.033 "H4'"  L1J 23 
L1J "H1'"  H5  H 0 1 N N N 24.413 29.309 18.755 -0.862 -1.069 -1.300 "H1'"  L1J 24 
L1J H8     H6  H 0 1 N N N 26.271 29.978 20.348 -0.814 2.243  0.548  H8     L1J 25 
L1J HN1    H7  H 0 1 N N N 24.292 25.895 24.920 5.067  -0.372 -0.067 HN1    L1J 26 
L1J HN22   H8  H 0 0 N N N 21.549 25.542 22.819 3.328  -3.197 -1.189 HN22   L1J 27 
L1J HN21   H9  H 0 0 N N N 22.289 25.085 24.316 4.848  -2.557 -0.870 HN21   L1J 28 
L1J "H2'2" H10 H 0 0 N N N 23.464 26.504 19.518 -1.482 -2.356 0.497  "H2'2" L1J 29 
L1J "H2'1" H11 H 0 0 N N N 24.609 26.996 18.224 -0.891 -1.092 1.619  "H2'1" L1J 30 
L1J "H3'"  H12 H 0 1 N N N 21.955 26.670 17.673 -3.023 -0.125 1.833  "H3'"  L1J 31 
L1J H1     H13 H 0 1 N N N 23.436 27.615 16.118 -3.580 -2.422 2.179  H1     L1J 32 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
L1J "O3'" "C3'"  SING N N 1  
L1J "C3'" "C4'"  SING N N 2  
L1J "C3'" "C2'"  SING N N 3  
L1J "C4'" "C5'"  SING N N 4  
L1J "C4'" "O4'"  SING N N 5  
L1J "C2'" "C1'"  SING N N 6  
L1J "C5'" "O5'"  SING N N 7  
L1J "C1'" "O4'"  SING N N 8  
L1J "C1'" N9     SING N N 9  
L1J N9    C8     SING Y N 10 
L1J N9    C4     SING Y N 11 
L1J C8    N7     DOUB Y N 12 
L1J C4    N3     SING N N 13 
L1J C4    C5     DOUB Y N 14 
L1J N3    C2     DOUB N N 15 
L1J N7    C5     SING Y N 16 
L1J C5    C6     SING N N 17 
L1J C2    N2     SING N N 18 
L1J C2    N1     SING N N 19 
L1J C6    N1     SING N N 20 
L1J C6    O6     DOUB N N 21 
L1J "O5'" "HO5'" SING N N 22 
L1J "C5'" "H5'2" SING N N 23 
L1J "C5'" "H5'1" SING N N 24 
L1J "C4'" "H4'"  SING N N 25 
L1J "C1'" "H1'"  SING N N 26 
L1J C8    H8     SING N N 27 
L1J N1    HN1    SING N N 28 
L1J N2    HN22   SING N N 29 
L1J N2    HN21   SING N N 30 
L1J "C2'" "H2'2" SING N N 31 
L1J "C2'" "H2'1" SING N N 32 
L1J "C3'" "H3'"  SING N N 33 
L1J "O3'" H1     SING N N 34 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
L1J InChI            InChI                1.06  "InChI=1S/C10H13N5O4/c11-10-13-8-7(9(18)14-10)12-3-15(8)6-1-4(17)5(2-16)19-6/h3-6,16-17H,1-2H2,(H3,11,13,14,18)/t4-,5+,6+/m0/s1" 
L1J InChIKey         InChI                1.06  YKBGVTZYEHREMT-KVQBGUIXSA-N                                                                                                      
L1J SMILES_CANONICAL CACTVS               3.385 "NC1=Nc2n(cnc2C(=O)N1)[C@H]3C[C@H](O)[C@@H](CO)O3"                                                                               
L1J SMILES           CACTVS               3.385 "NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](O)[CH](CO)O3"                                                                                   
L1J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)CO)O)N=C(NC2=O)N"                                                                               
L1J SMILES           "OpenEye OEToolkits" 2.0.7 "c1nc2c(n1C3CC(C(O3)CO)O)N=C(NC2=O)N"                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           L1J 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-azanyl-9-[(2~{R},4~{S},5~{R})-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]-1~{H}-purin-6-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
L1J "Create component"  2022-06-09 PDBE 
L1J "Initial release"   2022-06-15 RCSB 
L1J "Modify descriptor" 2022-08-22 RCSB 
# 
