data_J2J
#

_chem_comp.id                                   J2J
_chem_comp.name                                 "5'-O-[(S)-[(2,3-dihydroxybenzene-1-carbonyl)oxy](hydroxy)phosphoryl]adenosine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C17 H18 N5 O10 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-08-03
_chem_comp.pdbx_modified_date                   2019-08-16
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       483.326
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    J2J
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6E97
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
J2J  C2      C1   C  0  1  Y  N  N  -37.545   -6.372  90.002   7.168  -1.555   1.443  C2      J2J   1  
J2J  N3      N1   N  0  1  Y  N  N  -37.645   -7.187  91.062   6.082  -0.823   1.316  N3      J2J   2  
J2J  C4      C2   C  0  1  Y  N  N  -36.769   -8.199  91.250   5.276  -0.982   0.271  C4      J2J   3  
J2J  C6      C3   C  0  1  Y  N  N  -35.643   -7.471  89.144   6.770  -2.701  -0.521  C6      J2J   4  
J2J  C8      C4   C  0  1  Y  N  N  -35.551   -9.903  91.870   3.750  -0.998  -1.320  C8      J2J   5  
J2J  C9      C5   C  0  1  Y  N  N  -31.036  -13.594  90.291  -7.037  -2.768   1.443  C9      J2J   6  
J2J  C12     C6   C  0  1  Y  N  N  -31.473  -12.274  90.431  -5.752  -2.596   1.931  C12     J2J   7  
J2J  C15     C7   C  0  1  Y  N  N  -32.140  -11.833  91.579  -4.924  -1.639   1.387  C15     J2J   8  
J2J  C18     C8   C  0  1  Y  N  N  -32.407  -12.697  92.639  -5.378  -0.836   0.336  C18     J2J   9  
J2J  C21     C9   C  0  1  N  N  N  -33.132  -12.239  93.875  -4.494   0.188  -0.249  C21     J2J  10  
J2J  C3      C10  C  0  1  Y  N  N  -31.977  -14.107  92.526  -6.677  -1.010  -0.157  C3      J2J  11  
J2J  C5      C11  C  0  1  Y  N  N  -35.693   -8.410  90.281   5.600  -1.944  -0.701  C5      J2J  12  
J2J  N1      N2   N  0  1  Y  N  N  -36.586   -6.505  89.073   7.516  -2.468   0.554  N1      J2J  13  
J2J  N6      N3   N  0  1  N  N  N  -34.691   -7.585  88.200   7.137  -3.668  -1.441  N6      J2J  14  
J2J  O3      O1   O  0  1  N  N  N  -32.226  -14.972  93.542  -7.129  -0.237  -1.177  O3      J2J  15  
J2J  O6      O2   O  0  1  N  N  N  -30.844  -15.815  91.149  -8.765  -2.156  -0.071  O6      J2J  16  
J2J  "C1'"   C12  C  0  1  N  N  R  -37.487   -9.282  93.357   3.373   0.664   0.541  "C1'"   J2J  17  
J2J  "C2'"   C13  C  0  1  N  N  R  -38.825   -9.945  93.045   3.890   2.050   0.097  "C2'"   J2J  18  
J2J  "C3'"   C14  C  0  1  N  N  S  -38.486  -11.400  93.323   2.619   2.927   0.048  "C3'"   J2J  19  
J2J  "C4'"   C15  C  0  1  N  N  R  -37.639  -11.276  94.577   1.484   1.967   0.468  "C4'"   J2J  20  
J2J  "C5'"   C16  C  0  1  N  N  N  -36.754  -12.447  94.919   0.214   2.262  -0.333  "C5'"   J2J  21  
J2J  C61     C17  C  0  1  Y  N  N  -31.270  -14.530  91.292  -7.502  -1.981   0.403  C61     J2J  22  
J2J  N7      N4   N  0  1  Y  N  N  -34.981   -9.474  90.711   4.626  -1.905  -1.641  N7      J2J  23  
J2J  N9      N5   N  0  1  Y  N  N  -36.621   -9.143  92.176   4.106  -0.401  -0.147  N9      J2J  24  
J2J  O17     O3   O  0  1  N  N  N  -33.268  -11.041  94.040  -4.892   0.884  -1.162  O17     J2J  25  
J2J  O1P     O4   O  0  1  N  N  N  -35.148  -14.233  96.835  -2.280   1.253  -1.924  O1P     J2J  26  
J2J  "O2'"   O5   O  0  1  N  N  N  -39.764   -9.444  93.983   4.818   2.568   1.053  "O2'"   J2J  27  
J2J  O2P     O6   O  0  1  N  N  N  -33.642  -13.234  94.839  -3.244   0.352   0.228  O2P     J2J  28  
J2J  "O3'"   O7   O  0  1  N  N  N  -39.610  -12.247  93.470   2.723   4.013   0.971  "O3'"   J2J  29  
J2J  O3P     O8   O  0  1  N  N  N  -33.649  -12.166  97.114  -2.993   2.937  -0.184  O3P     J2J  30  
J2J  "O4'"   O9   O  0  1  N  N  N  -36.836  -10.093  94.317   1.981   0.648   0.154  "O4'"   J2J  31  
J2J  "O5'"   O10  O  0  1  N  N  N  -35.793  -12.089  95.902  -0.854   1.444   0.150  "O5'"   J2J  32  
J2J  P       P1   P  0  1  N  N  N  -34.521  -13.007  96.202  -2.342   1.491  -0.464  P       J2J  33  
J2J  H2      H1   H  0  1  N  N  N  -38.266   -5.576  89.891   7.802  -1.401   2.304  H2      J2J  34  
J2J  H8      H2   H  0  1  N  N  N  -35.196  -10.735  92.461   2.869  -0.755  -1.897  H8      J2J  35  
J2J  HC9     H3   H  0  1  N  N  N  -30.511  -13.890  89.395  -7.679  -3.523   1.873  HC9     J2J  36  
J2J  HC12    H4   H  0  0  N  N  N  -31.290  -11.574  89.629  -5.399  -3.214   2.743  HC12    J2J  37  
J2J  HC15    H5   H  0  0  N  N  N  -32.454  -10.802  91.645  -3.923  -1.509   1.772  HC15    J2J  38  
J2J  HN61    H6   H  0  0  N  N  N  -34.820   -6.874  87.508   6.583  -3.829  -2.221  HN61    J2J  39  
J2J  HN62    H7   H  0  0  N  N  N  -33.790   -7.480  88.621   7.947  -4.184  -1.306  HN62    J2J  40  
J2J  HO3     H8   H  0  1  N  N  N  -32.685  -14.518  94.239  -6.959  -0.605  -2.055  HO3     J2J  41  
J2J  HO6     H9   H  0  1  N  N  N  -31.085  -16.316  91.919  -9.431  -1.615   0.374  HO6     J2J  42  
J2J  "H1'"   H10  H  0  1  N  N  N  -37.683   -8.285  93.779   3.467   0.552   1.621  "H1'"   J2J  43  
J2J  "H2'"   H11  H  0  1  N  N  N  -39.124   -9.787  91.998   4.350   1.988  -0.889  "H2'"   J2J  44  
J2J  "H3'"   H12  H  0  1  N  N  N  -37.846  -11.769  92.508   2.452   3.301  -0.962  "H3'"   J2J  45  
J2J  "H4'"   H13  H  0  1  N  N  N  -38.307  -11.081  95.429   1.287   2.056   1.536  "H4'"   J2J  46  
J2J  "H5'2"  H14  H  0  0  N  N  N  -37.376  -13.267  95.306  -0.053   3.312  -0.218  "H5'2"  J2J  47  
J2J  "H5'1"  H15  H  0  0  N  N  N  -36.232  -12.781  94.010   0.390   2.045  -1.386  "H5'1"  J2J  48  
J2J  "HO2'"  H16  H  0  0  N  N  N  -39.956   -8.535  93.785   5.130   3.461   0.855  "HO2'"  J2J  49  
J2J  "HO3'"  H17  H  0  0  N  N  N  -39.318  -13.135  93.641   3.458   4.614   0.790  "HO3'"  J2J  50  
J2J  H1      H18  H  0  1  N  N  N  -33.629  -12.555  97.981  -3.064   3.160   0.755  H1      J2J  51  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
J2J  N6     C6      SING  N  N   1  
J2J  N1     C6      DOUB  Y  N   2  
J2J  N1     C2      SING  Y  N   3  
J2J  C6     C5      SING  Y  N   4  
J2J  C2     N3      DOUB  Y  N   5  
J2J  C5     N7      SING  Y  N   6  
J2J  C5     C4      DOUB  Y  N   7  
J2J  C9     C12     DOUB  Y  N   8  
J2J  C9     C61     SING  Y  N   9  
J2J  C12    C15     SING  Y  N  10  
J2J  N7     C8      DOUB  Y  N  11  
J2J  N3     C4      SING  Y  N  12  
J2J  O6     C61     SING  N  N  13  
J2J  C4     N9      SING  Y  N  14  
J2J  C61    C3      DOUB  Y  N  15  
J2J  C15    C18     DOUB  Y  N  16  
J2J  C8     N9      SING  Y  N  17  
J2J  N9     "C1'"   SING  N  N  18  
J2J  C3     C18     SING  Y  N  19  
J2J  C3     O3      SING  N  N  20  
J2J  C18    C21     SING  N  N  21  
J2J  "C2'"  "C3'"   SING  N  N  22  
J2J  "C2'"  "C1'"   SING  N  N  23  
J2J  "C2'"  "O2'"   SING  N  N  24  
J2J  "C3'"  "O3'"   SING  N  N  25  
J2J  "C3'"  "C4'"   SING  N  N  26  
J2J  "C1'"  "O4'"   SING  N  N  27  
J2J  C21    O17     DOUB  N  N  28  
J2J  C21    O2P     SING  N  N  29  
J2J  "O4'"  "C4'"   SING  N  N  30  
J2J  "C4'"  "C5'"   SING  N  N  31  
J2J  O2P    P       SING  N  N  32  
J2J  "C5'"  "O5'"   SING  N  N  33  
J2J  "O5'"  P       SING  N  N  34  
J2J  P      O1P     DOUB  N  N  35  
J2J  P      O3P     SING  N  N  36  
J2J  C2     H2      SING  N  N  37  
J2J  C8     H8      SING  N  N  38  
J2J  C9     HC9     SING  N  N  39  
J2J  C12    HC12    SING  N  N  40  
J2J  C15    HC15    SING  N  N  41  
J2J  N6     HN61    SING  N  N  42  
J2J  N6     HN62    SING  N  N  43  
J2J  O3     HO3     SING  N  N  44  
J2J  O6     HO6     SING  N  N  45  
J2J  "C1'"  "H1'"   SING  N  N  46  
J2J  "C2'"  "H2'"   SING  N  N  47  
J2J  "C3'"  "H3'"   SING  N  N  48  
J2J  "C4'"  "H4'"   SING  N  N  49  
J2J  "C5'"  "H5'2"  SING  N  N  50  
J2J  "C5'"  "H5'1"  SING  N  N  51  
J2J  "O2'"  "HO2'"  SING  N  N  52  
J2J  "O3'"  "HO3'"  SING  N  N  53  
J2J  O3P    H1      SING  N  N  54  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
J2J  SMILES            ACDLabs               12.01  "c2nc1n(cnc1c(n2)N)C3OC(C(C3O)O)COP(=O)(OC(c4cccc(c4O)O)=O)O"  
J2J  InChI             InChI                 1.03   "InChI=1S/C17H18N5O10P/c18-14-10-15(20-5-19-14)22(6-21-10)16-13(26)12(25)9(31-16)4-30-33(28,29)32-17(27)7-2-1-3-8(23)11(7)24/h1-3,5-6,9,12-13,16,23-26H,4H2,(H,28,29)(H2,18,19,20)/t9-,12-,13-,16-/m1/s1"  
J2J  InChIKey          InChI                 1.03   ULPVJDOMCRTJSN-RVXWVPLUSA-N  
J2J  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)OC(=O)c4cccc(O)c4O)[C@@H](O)[C@H]3O"  
J2J  SMILES            CACTVS                3.385  "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)OC(=O)c4cccc(O)c4O)[CH](O)[CH]3O"  
J2J  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1cc(c(c(c1)O)O)C(=O)OP(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O"  
J2J  SMILES            "OpenEye OEToolkits"  2.0.6  "c1cc(c(c(c1)O)O)C(=O)OP(=O)(O)OCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
J2J  "SYSTEMATIC NAME"  ACDLabs               12.01  "5'-O-[(S)-[(2,3-dihydroxybenzene-1-carbonyl)oxy](hydroxy)phosphoryl]adenosine"  
J2J  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] 2,3-bis(oxidanyl)benzoate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
J2J  "Create component"  2018-08-03  RCSB  
J2J  "Initial release"   2019-08-21  RCSB  
##
