data_F5J
# 
_chem_comp.id                                    F5J 
_chem_comp.name                                  "7-[(5R)-5-C-phenyl-beta-D-ribofuranosyl]-7H-pyrrolo[2,3-d]pyrimidin-4-amine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H18 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-02-28 
_chem_comp.pdbx_modified_date                    2018-05-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        342.349 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     F5J 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6CKC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
F5J C7  C1  C 0 1 Y N N -36.524 -38.003 -4.512 -1.499 1.163  -1.134 C7  F5J 1  
F5J C6  C2  C 0 1 Y N N -37.801 -37.452 -4.490 -2.715 1.706  -1.305 C6  F5J 2  
F5J C1  C3  C 0 1 Y N N -28.424 -41.024 -6.178 4.936  2.781  0.995  C1  F5J 3  
F5J C5  C4  C 0 1 Y N N -29.750 -38.969 -6.161 4.619  0.413  0.838  C5  F5J 4  
F5J C4  C5  C 0 1 Y N N -30.856 -41.123 -6.181 3.407  1.883  -0.614 C4  F5J 5  
F5J C3  C6  C 0 1 Y N N -28.504 -39.622 -6.173 5.231  1.503  1.429  C3  F5J 6  
F5J C2  C7  C 0 1 Y N N -29.607 -41.775 -6.184 4.024  2.971  -0.026 C2  F5J 7  
F5J C8  C8  C 0 1 Y N N -36.817 -34.199 -2.294 -4.694 -0.540 1.510  C8  F5J 8  
F5J C9  C9  C 0 1 Y N N -37.711 -36.232 -3.782 -3.614 1.033  -0.370 C9  F5J 9  
F5J C10 C10 C 0 1 Y N N -30.930 -39.720 -6.167 3.711  0.603  -0.187 C10 F5J 10 
F5J C11 C11 C 0 1 Y N N -36.377 -36.099 -3.361 -2.828 0.094  0.323  C11 F5J 11 
F5J C12 C12 C 0 1 Y N N -38.594 -35.221 -3.413 -4.978 1.131  -0.056 C12 F5J 12 
F5J C13 C13 C 0 1 N N S -32.543 -39.116 -3.617 1.134  -2.217 -0.681 C13 F5J 13 
F5J C14 C14 C 0 1 N N R -33.949 -38.854 -3.057 -0.373 -1.952 -0.468 C14 F5J 14 
F5J C15 C15 C 0 1 N N R -32.464 -38.232 -4.863 1.825  -0.999 -0.029 C15 F5J 15 
F5J C16 C16 C 0 1 N N R -34.273 -37.473 -3.594 -0.414 -0.606 0.288  C16 F5J 16 
F5J C17 C17 C 0 1 N N R -32.260 -39.018 -6.154 3.054  -0.585 -0.841 C17 F5J 17 
F5J N18 N1  N 0 1 Y N N -35.869 -35.115 -2.575 -3.411 -0.666 1.249  N18 F5J 18 
F5J N19 N2  N 0 1 Y N N -38.116 -34.173 -2.704 -5.469 0.328  0.884  N19 F5J 19 
F5J N20 N3  N 0 1 Y N N -35.672 -37.193 -3.817 -1.554 0.198  -0.163 N20 F5J 20 
F5J N21 N4  N 0 1 N N N -39.951 -35.229 -3.805 -5.792 2.039  -0.709 N21 F5J 21 
F5J O22 O1  O 0 1 N N N -33.723 -37.510 -4.908 0.829  0.046  -0.051 O22 F5J 22 
F5J O23 O2  O 0 1 N N N -31.500 -38.706 -2.726 1.528  -3.425 -0.028 O23 F5J 23 
F5J O24 O3  O 0 1 N N N -34.041 -38.969 -1.641 -0.956 -2.989 0.323  O24 F5J 24 
F5J O25 O4  O 0 1 N N N -33.283 -40.008 -6.297 3.979  -1.673 -0.893 O25 F5J 25 
F5J H1  H1  H 0 1 N N N -36.250 -38.926 -5.001 -0.612 1.443  -1.683 H1  F5J 26 
F5J H2  H2  H 0 1 N N N -38.692 -37.876 -4.930 -2.979 2.490  -2.000 H2  F5J 27 
F5J H3  H3  H 0 1 N N N -27.463 -41.517 -6.177 5.414  3.632  1.457  H3  F5J 28 
F5J H4  H4  H 0 1 N N N -29.795 -37.890 -6.147 4.849  -0.586 1.177  H4  F5J 29 
F5J H5  H5  H 0 1 N N N -31.765 -41.707 -6.190 2.699  2.031  -1.415 H5  F5J 30 
F5J H6  H6  H 0 1 N N N -27.596 -39.037 -6.178 5.941  1.354  2.230  H6  F5J 31 
F5J H7  H7  H 0 1 N N N -29.561 -42.854 -6.191 3.793  3.970  -0.365 H7  F5J 32 
F5J H8  H8  H 0 1 N N N -36.507 -33.380 -1.662 -5.133 -1.173 2.267  H8  F5J 33 
F5J H9  H9  H 0 1 N N N -32.441 -40.175 -3.898 1.367  -2.266 -1.745 H9  F5J 34 
F5J H10 H10 H 0 1 N N N -34.638 -39.573 -3.526 -0.886 -1.870 -1.427 H10 F5J 35 
F5J H11 H11 H 0 1 N N N -31.631 -37.523 -4.743 2.110  -1.230 0.998  H11 F5J 36 
F5J H12 H12 H 0 1 N N N -33.800 -36.698 -2.973 -0.473 -0.776 1.363  H12 F5J 37 
F5J H13 H13 H 0 1 N N N -32.299 -38.317 -7.000 2.747  -0.319 -1.853 H13 F5J 38 
F5J H14 H14 H 0 1 N N N -40.398 -34.396 -3.478 -5.422 2.618  -1.392 H14 F5J 39 
F5J H15 H15 H 0 1 N N N -40.009 -35.269 -4.803 -6.734 2.096  -0.482 H15 F5J 40 
F5J H16 H16 H 0 1 N N N -31.526 -39.240 -1.941 1.078  -4.215 -0.358 H16 F5J 41 
F5J H17 H17 H 0 1 N N N -34.934 -38.795 -1.366 -0.903 -3.867 -0.078 H17 F5J 42 
F5J H18 H18 H 0 1 N N N -34.135 -39.587 -6.292 4.295  -1.962 -0.027 H18 F5J 43 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
F5J O25 C17 SING N N 1  
F5J C2  C4  DOUB Y N 2  
F5J C2  C1  SING Y N 3  
F5J C4  C10 SING Y N 4  
F5J C1  C3  DOUB Y N 5  
F5J C3  C5  SING Y N 6  
F5J C10 C5  DOUB Y N 7  
F5J C10 C17 SING N N 8  
F5J C17 C15 SING N N 9  
F5J O22 C15 SING N N 10 
F5J O22 C16 SING N N 11 
F5J C15 C13 SING N N 12 
F5J C7  C6  DOUB Y N 13 
F5J C7  N20 SING Y N 14 
F5J C6  C9  SING Y N 15 
F5J N20 C16 SING N N 16 
F5J N20 C11 SING Y N 17 
F5J N21 C12 SING N N 18 
F5J C9  C12 DOUB Y N 19 
F5J C9  C11 SING Y N 20 
F5J C13 C14 SING N N 21 
F5J C13 O23 SING N N 22 
F5J C16 C14 SING N N 23 
F5J C12 N19 SING Y N 24 
F5J C11 N18 DOUB Y N 25 
F5J C14 O24 SING N N 26 
F5J N19 C8  DOUB Y N 27 
F5J N18 C8  SING Y N 28 
F5J C7  H1  SING N N 29 
F5J C6  H2  SING N N 30 
F5J C1  H3  SING N N 31 
F5J C5  H4  SING N N 32 
F5J C4  H5  SING N N 33 
F5J C3  H6  SING N N 34 
F5J C2  H7  SING N N 35 
F5J C8  H8  SING N N 36 
F5J C13 H9  SING N N 37 
F5J C14 H10 SING N N 38 
F5J C15 H11 SING N N 39 
F5J C16 H12 SING N N 40 
F5J C17 H13 SING N N 41 
F5J N21 H14 SING N N 42 
F5J N21 H15 SING N N 43 
F5J O23 H16 SING N N 44 
F5J O24 H17 SING N N 45 
F5J O25 H18 SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
F5J SMILES           ACDLabs              12.01 "c2cc1c(ncnc1n2C4C(C(O)C(C(c3ccccc3)O)O4)O)N"                                                                                                                     
F5J InChI            InChI                1.03  "InChI=1S/C17H18N4O4/c18-15-10-6-7-21(16(10)20-8-19-15)17-13(24)12(23)14(25-17)11(22)9-4-2-1-3-5-9/h1-8,11-14,17,22-24H,(H2,18,19,20)/t11-,12+,13-,14-,17-/m1/s1" 
F5J InChIKey         InChI                1.03  WWOOWAHTEXIWBO-QFRSUPTLSA-N                                                                                                                                       
F5J SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(ccc12)[C@@H]3O[C@@H]([C@@H](O)[C@H]3O)[C@H](O)c4ccccc4"                                                                                                
F5J SMILES           CACTVS               3.385 "Nc1ncnc2n(ccc12)[CH]3O[CH]([CH](O)[CH]3O)[CH](O)c4ccccc4"                                                                                                        
F5J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)[C@H]([C@@H]2[C@H]([C@H]([C@@H](O2)n3ccc4c3ncnc4N)O)O)O"                                                                                               
F5J SMILES           "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)C(C2C(C(C(O2)n3ccc4c3ncnc4N)O)O)O"                                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
F5J "SYSTEMATIC NAME" ACDLabs              12.01 "7-[(5R)-5-C-phenyl-beta-D-ribofuranosyl]-7H-pyrrolo[2,3-d]pyrimidin-4-amine"                                          
F5J "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R},3~{R},4~{S},5~{R})-2-(4-azanylpyrrolo[2,3-d]pyrimidin-7-yl)-5-[(~{R})-oxidanyl(phenyl)methyl]oxolane-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
F5J "Create component" 2018-02-28 RCSB 
F5J "Initial release"  2018-05-16 RCSB 
# 
