data_ERJ
#

_chem_comp.id                                   ERJ
_chem_comp.name                                 "9-beta-D-ribofuranosyl-6-(thiophen-3-yl)-9H-purine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C14 H14 N4 O4 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-01-30
_chem_comp.pdbx_modified_date                   2019-04-26
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       334.350
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    ERJ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6C9R
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ERJ  N1     N1   N  0  1  Y  N  N  -11.636  15.628  17.950  -2.575   2.040  -0.648  N1     ERJ   1  
ERJ  N3     N2   N  0  1  Y  N  N  -11.279  14.216  16.164  -0.269   2.094  -0.799  N3     ERJ   2  
ERJ  C4     C1   C  0  1  Y  N  N  -12.598  13.968  16.049  -0.170   0.822  -0.431  C4     ERJ   3  
ERJ  C5     C2   C  0  1  Y  N  N  -13.487  14.573  16.905  -1.343   0.098  -0.150  C5     ERJ   4  
ERJ  C6     C3   C  0  1  Y  N  N  -12.947  15.437  17.912  -2.578   0.762  -0.273  C6     ERJ   5  
ERJ  C8     C4   C  0  1  Y  N  N  -14.625  13.322  15.539   0.332  -1.246   0.145  C8     ERJ   6  
ERJ  C20    C5   C  0  1  Y  N  N  -13.203  16.945  19.780  -4.040  -1.245  -0.274  C20    ERJ   7  
ERJ  C22    C6   C  0  1  Y  N  N  -15.798  16.581  20.027  -5.998  -0.117   0.763  C22    ERJ   8  
ERJ  "C1'"  C7   C  0  1  N  N  R  -12.806  12.419  14.103   2.294   0.242  -0.407  "C1'"  ERJ   9  
ERJ  C19    C8   C  0  1  Y  N  N  -13.754  16.072  18.851  -3.848   0.058   0.009  C19    ERJ  10  
ERJ  C2     C9   C  0  1  Y  N  N  -10.818  15.023  17.111  -1.447   2.675  -0.900  C2     ERJ  11  
ERJ  "C2'"  C10  C  0  1  N  N  R  -13.453  11.037  13.912   2.891   0.826   0.899  "C2'"  ERJ  12  
ERJ  C23    C11  C  0  1  Y  N  N  -15.149  15.871  18.978  -4.951   0.687   0.591  C23    ERJ  13  
ERJ  "C3'"  C12  C  0  1  N  N  S  -13.667  10.935  12.377   4.391   0.469   0.757  "C3'"  ERJ  14  
ERJ  "C4'"  C13  C  0  1  N  N  R  -13.091  12.228  11.819   4.410  -0.688  -0.260  "C4'"  ERJ  15  
ERJ  "C5'"  C14  C  0  1  N  N  N  -13.865  12.831  10.664   5.059  -1.923   0.369  "C5'"  ERJ  16  
ERJ  N7     N3   N  0  1  Y  N  N  -14.736  14.147  16.554  -0.966  -1.155   0.195  N7     ERJ  17  
ERJ  N9     N4   N  0  1  Y  N  N  -13.335  13.200  15.217   0.869  -0.053  -0.237  N9     ERJ  18  
ERJ  "O2'"  O1   O  0  1  N  N  N  -12.643  10.002  14.426   2.706   2.241   0.955  "O2'"  ERJ  19  
ERJ  "O3'"  O2   O  0  1  N  N  N  -12.929   9.833  11.841   5.126   1.589   0.259  "O3'"  ERJ  20  
ERJ  "O4'"  O3   O  0  1  N  N  N  -13.097  13.148  12.926   3.044  -0.975  -0.610  "O4'"  ERJ  21  
ERJ  "O5'"  O4   O  0  1  N  N  N  -13.356  14.122  10.350   5.178  -2.952  -0.616  "O5'"  ERJ  22  
ERJ  S21    S1   S  0  1  Y  N  N  -14.580  17.494  20.726  -5.611  -1.730   0.180  S21    ERJ  23  
ERJ  H1     H1   H  0  1  N  N  N  -15.445  12.823  15.044   0.900  -2.136   0.372  H1     ERJ  24  
ERJ  H2     H2   H  0  1  N  N  N  -12.166  17.223  19.895  -3.303  -1.891  -0.729  H2     ERJ  25  
ERJ  H3     H3   H  0  1  N  N  N  -16.840  16.540  20.309  -6.943   0.177   1.195  H3     ERJ  26  
ERJ  H4     H4   H  0  1  N  N  N  -11.720  12.290  14.219   2.446   0.929  -1.240  H4     ERJ  27  
ERJ  H5     H5   H  0  1  N  N  N   -9.754  15.187  17.196  -1.490   3.711  -1.202  H5     ERJ  28  
ERJ  H6     H6   H  0  1  N  N  N  -14.437  11.036  14.403   2.457   0.343   1.774  H6     ERJ  29  
ERJ  H7     H7   H  0  1  N  N  N  -15.692  15.214  18.315  -4.955   1.729   0.875  H7     ERJ  30  
ERJ  H8     H8   H  0  1  N  N  N  -14.740  10.860  12.149   4.797   0.142   1.715  H8     ERJ  31  
ERJ  H9     H9   H  0  1  N  N  N  -12.057  12.042  11.494   4.963  -0.389  -1.151  H9     ERJ  32  
ERJ  H10    H10  H  0  1  N  N  N  -14.925  12.917  10.943   6.049  -1.662   0.743  H10    ERJ  33  
ERJ  H11    H11  H  0  1  N  N  N  -13.769  12.179   9.783   4.440  -2.278   1.193  H11    ERJ  34  
ERJ  H12    H12  H  0  1  N  N  N  -12.545  10.112  15.365   3.063   2.653   1.754  H12    ERJ  35  
ERJ  H13    H13  H  0  1  N  N  N  -13.281   9.019  12.183   6.072   1.421   0.151  H13    ERJ  36  
ERJ  H14    H14  H  0  1  N  N  N  -13.848  14.489   9.625   5.582  -3.766  -0.287  H14    ERJ  37  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ERJ  "O5'"  "C5'"  SING  N  N   1  
ERJ  "C5'"  "C4'"  SING  N  N   2  
ERJ  "C4'"  "C3'"  SING  N  N   3  
ERJ  "C4'"  "O4'"  SING  N  N   4  
ERJ  "O3'"  "C3'"  SING  N  N   5  
ERJ  "C3'"  "C2'"  SING  N  N   6  
ERJ  "O4'"  "C1'"  SING  N  N   7  
ERJ  "C2'"  "C1'"  SING  N  N   8  
ERJ  "C2'"  "O2'"  SING  N  N   9  
ERJ  "C1'"  N9     SING  N  N  10  
ERJ  N9     C8     SING  Y  N  11  
ERJ  N9     C4     SING  Y  N  12  
ERJ  C8     N7     DOUB  Y  N  13  
ERJ  C4     N3     DOUB  Y  N  14  
ERJ  C4     C5     SING  Y  N  15  
ERJ  N3     C2     SING  Y  N  16  
ERJ  N7     C5     SING  Y  N  17  
ERJ  C5     C6     DOUB  Y  N  18  
ERJ  C2     N1     DOUB  Y  N  19  
ERJ  C6     N1     SING  Y  N  20  
ERJ  C6     C19    SING  N  N  21  
ERJ  C19    C23    SING  Y  N  22  
ERJ  C19    C20    DOUB  Y  N  23  
ERJ  C23    C22    DOUB  Y  N  24  
ERJ  C20    S21    SING  Y  N  25  
ERJ  C22    S21    SING  Y  N  26  
ERJ  C8     H1     SING  N  N  27  
ERJ  C20    H2     SING  N  N  28  
ERJ  C22    H3     SING  N  N  29  
ERJ  "C1'"  H4     SING  N  N  30  
ERJ  C2     H5     SING  N  N  31  
ERJ  "C2'"  H6     SING  N  N  32  
ERJ  C23    H7     SING  N  N  33  
ERJ  "C3'"  H8     SING  N  N  34  
ERJ  "C4'"  H9     SING  N  N  35  
ERJ  "C5'"  H10    SING  N  N  36  
ERJ  "C5'"  H11    SING  N  N  37  
ERJ  "O2'"  H12    SING  N  N  38  
ERJ  "O3'"  H13    SING  N  N  39  
ERJ  "O5'"  H14    SING  N  N  40  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ERJ  SMILES            ACDLabs               12.01  "n1c(c2c(nc1)n(cn2)C3C(O)C(C(O3)CO)O)c4cscc4"  
ERJ  InChI             InChI                 1.03   "InChI=1S/C14H14N4O4S/c19-3-8-11(20)12(21)14(22-8)18-6-17-10-9(7-1-2-23-4-7)15-5-16-13(10)18/h1-2,4-6,8,11-12,14,19-21H,3H2/t8-,11-,12-,14-/m1/s1"  
ERJ  InChIKey          InChI                 1.03   UXKNTUXJYSDVTH-LHNIVKCTSA-N  
ERJ  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c2ncnc3c4cscc4"  
ERJ  SMILES            CACTVS                3.385  "OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c2ncnc3c4cscc4"  
ERJ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1cscc1c2c3c(ncn2)n(cn3)[C@H]4[C@@H]([C@@H]([C@H](O4)CO)O)O"  
ERJ  SMILES            "OpenEye OEToolkits"  2.0.6  "c1cscc1c2c3c(ncn2)n(cn3)C4C(C(C(O4)CO)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ERJ  "SYSTEMATIC NAME"  ACDLabs               12.01  "9-beta-D-ribofuranosyl-6-(thiophen-3-yl)-9H-purine"  
ERJ  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(2~{R},3~{S},4~{R},5~{R})-2-(hydroxymethyl)-5-(6-thiophen-3-ylpurin-9-yl)oxolane-3,4-diol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ERJ  "Create component"  2018-01-30  RCSB  
ERJ  "Initial release"   2019-05-01  RCSB  
##
