data_EFJ
# 
_chem_comp.id                                    EFJ 
_chem_comp.name                                  "2-(1~{H}-benzimidazol-2-ylsulfanylmethyl)-3-bromanyl-5,7-dimethyl-imidazo[1,2-a]pyrimidine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H14 Br N5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-01-05 
_chem_comp.pdbx_modified_date                    2023-04-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        388.285 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     EFJ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7QPF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
EFJ C1  C1  C  0 1 N N N -4.442 -27.872 30.726 6.510  2.620  -0.064 C1  EFJ 1  
EFJ C2  C2  C  0 1 Y N N -4.476 -27.876 32.228 5.296  1.728  -0.085 C2  EFJ 2  
EFJ C3  C3  C  0 1 Y N N -4.735 -29.072 32.942 5.443  0.346  0.106  C3  EFJ 3  
EFJ C4  C4  C  0 1 Y N N -4.773 -29.068 34.296 4.344  -0.448 0.085  C4  EFJ 4  
EFJ C5  C5  C  0 1 N N N -5.027 -30.289 35.094 4.473  -1.935 0.289  C5  EFJ 5  
EFJ N1  N1  N  0 1 Y N N -4.545 -27.849 34.945 3.120  0.119  -0.123 N1  EFJ 6  
EFJ C6  C6  C  0 1 Y N N -4.480 -27.464 36.272 1.857  -0.401 -0.197 C6  EFJ 7  
EFJ BR1 BR1 BR 0 0 N N N -4.706 -28.592 37.738 1.378  -2.222 -0.018 BR1 EFJ 8  
EFJ C7  C7  C  0 1 Y N N -4.200 -26.139 36.295 1.015  0.632  -0.422 C7  EFJ 9  
EFJ C8  C8  C  0 1 N N N -4.131 -25.225 37.474 -0.481 0.530  -0.575 C8  EFJ 10 
EFJ S1  S1  S  0 1 N N N -2.584 -25.238 38.414 -1.266 0.702  1.047  S1  EFJ 11 
EFJ C9  C9  C  0 1 Y N N -3.026 -24.102 39.676 -2.959 0.548  0.585  C9  EFJ 12 
EFJ N2  N2  N  0 1 Y N N -3.811 -23.021 39.534 -4.018 0.611  1.447  N2  EFJ 13 
EFJ C10 C10 C  0 1 Y N N -3.884 -22.468 40.815 -5.170 0.446  0.695  C10 EFJ 14 
EFJ C11 C11 C  0 1 Y N N -4.554 -21.329 41.263 -6.521 0.417  1.002  C11 EFJ 15 
EFJ C12 C12 C  0 1 Y N N -4.444 -21.004 42.599 -7.450 0.229  -0.002 C12 EFJ 16 
EFJ C13 C13 C  0 1 Y N N -3.673 -21.778 43.477 -7.040 0.069  -1.316 C13 EFJ 17 
EFJ C14 C14 C  0 1 Y N N -2.986 -22.897 43.049 -5.701 0.096  -1.640 C14 EFJ 18 
EFJ C15 C15 C  0 1 Y N N -3.127 -23.241 41.706 -4.749 0.285  -0.635 C15 EFJ 19 
EFJ N3  N3  N  0 1 Y N N -2.602 -24.275 40.952 -3.392 0.363  -0.638 N3  EFJ 20 
EFJ N4  N4  N  0 1 Y N N -4.111 -25.662 35.001 1.730  1.759  -0.485 N4  EFJ 21 
EFJ C16 C16 C  0 1 Y N N -4.290 -26.699 34.185 3.012  1.474  -0.306 C16 EFJ 22 
EFJ N5  N5  N  0 1 Y N N -4.249 -26.717 32.838 4.107  2.248  -0.278 N5  EFJ 23 
EFJ H1  H1  H  0 1 N N N -4.223 -26.856 30.366 6.203  3.654  -0.224 H1  EFJ 24 
EFJ H2  H2  H  0 1 N N N -3.660 -28.561 30.375 7.007  2.534  0.902  H2  EFJ 25 
EFJ H3  H3  H  0 1 N N N -5.418 -28.196 30.336 7.197  2.318  -0.854 H3  EFJ 26 
EFJ H4  H4  H  0 1 N N N -4.903 -29.993 32.403 6.421  -0.081 0.268  H4  EFJ 27 
EFJ H5  H5  H  0 1 N N N -4.072 -30.788 35.315 5.522  -2.192 0.438  H5  EFJ 28 
EFJ H6  H6  H  0 1 N N N -5.524 -30.014 36.036 3.897  -2.233 1.165  H6  EFJ 29 
EFJ H7  H7  H  0 1 N N N -5.674 -30.972 34.524 4.092  -2.457 -0.590 H7  EFJ 30 
EFJ H8  H8  H  0 1 N N N -4.294 -24.199 37.112 -0.833 1.321  -1.235 H8  EFJ 31 
EFJ H9  H9  H  0 1 N N N -4.943 -25.504 38.162 -0.737 -0.440 -1.001 H9  EFJ 32 
EFJ H10 H10 H  0 1 N N N -4.246 -22.687 38.698 -3.971 0.746  2.406  H10 EFJ 33 
EFJ H11 H11 H  0 1 N N N -5.139 -20.723 40.587 -6.847 0.540  2.025  H11 EFJ 34 
EFJ H12 H12 H  0 1 N N N -4.963 -20.135 42.976 -8.502 0.206  0.239  H12 EFJ 35 
EFJ H13 H13 H  0 1 N N N -3.615 -21.492 44.517 -7.776 -0.077 -2.093 H13 EFJ 36 
EFJ H14 H14 H  0 1 N N N -2.370 -23.476 43.721 -5.389 -0.029 -2.666 H14 EFJ 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
EFJ C1  C2  SING N N 1  
EFJ C2  N5  DOUB Y N 2  
EFJ C2  C3  SING Y N 3  
EFJ N5  C16 SING Y N 4  
EFJ C3  C4  DOUB Y N 5  
EFJ C16 N1  SING Y N 6  
EFJ C16 N4  DOUB Y N 7  
EFJ C4  N1  SING Y N 8  
EFJ C4  C5  SING N N 9  
EFJ N1  C6  SING Y N 10 
EFJ N4  C7  SING Y N 11 
EFJ C6  C7  DOUB Y N 12 
EFJ C6  BR1 SING N N 13 
EFJ C7  C8  SING N N 14 
EFJ C8  S1  SING N N 15 
EFJ S1  C9  SING N N 16 
EFJ N2  C9  SING Y N 17 
EFJ N2  C10 SING Y N 18 
EFJ C9  N3  DOUB Y N 19 
EFJ C10 C11 DOUB Y N 20 
EFJ C10 C15 SING Y N 21 
EFJ N3  C15 SING Y N 22 
EFJ C11 C12 SING Y N 23 
EFJ C15 C14 DOUB Y N 24 
EFJ C12 C13 DOUB Y N 25 
EFJ C14 C13 SING Y N 26 
EFJ C1  H1  SING N N 27 
EFJ C1  H2  SING N N 28 
EFJ C1  H3  SING N N 29 
EFJ C3  H4  SING N N 30 
EFJ C5  H5  SING N N 31 
EFJ C5  H6  SING N N 32 
EFJ C5  H7  SING N N 33 
EFJ C8  H8  SING N N 34 
EFJ C8  H9  SING N N 35 
EFJ N2  H10 SING N N 36 
EFJ C11 H11 SING N N 37 
EFJ C12 H12 SING N N 38 
EFJ C13 H13 SING N N 39 
EFJ C14 H14 SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
EFJ InChI            InChI                1.06  "InChI=1S/C16H14BrN5S/c1-9-7-10(2)22-14(17)13(19-15(22)18-9)8-23-16-20-11-5-3-4-6-12(11)21-16/h3-7H,8H2,1-2H3,(H,20,21)" 
EFJ InChIKey         InChI                1.06  ALBNESBXBIORDS-UHFFFAOYSA-N                                                                                              
EFJ SMILES_CANONICAL CACTVS               3.385 "Cc1cc(C)n2c(Br)c(CSc3[nH]c4ccccc4n3)nc2n1"                                                                              
EFJ SMILES           CACTVS               3.385 "Cc1cc(C)n2c(Br)c(CSc3[nH]c4ccccc4n3)nc2n1"                                                                              
EFJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(n2c(c(nc2n1)CSc3[nH]c4ccccc4n3)Br)C"                                                                              
EFJ SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc(n2c(c(nc2n1)CSc3[nH]c4ccccc4n3)Br)C"                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           EFJ 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-(1~{H}-benzimidazol-2-ylsulfanylmethyl)-3-bromanyl-5,7-dimethyl-imidazo[1,2-a]pyrimidine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
EFJ "Create component"  2022-01-05 PDBE 
EFJ "Modify descriptor" 2022-08-22 RCSB 
EFJ "Initial release"   2023-04-19 RCSB 
# 
