data_DGJ
#

_chem_comp.id                                   DGJ
_chem_comp.name                                 "(2R,3S,4R,5S)-2-(hydroxymethyl)piperidine-3,4,5-triol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C6 H13 N O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        1-deoxygalactonojirimycin
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-07-01
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       163.172
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DGJ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3S5Y
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DGJ  C1   C1   C  0  1  N  N  N  34.520  57.736  32.670  -0.465  -1.736   0.102  C1   DGJ   1  
DGJ  C2   C2   C  0  1  N  N  S  33.115  57.507  32.116  -1.550  -0.673   0.291  C2   DGJ   2  
DGJ  O2   O2   O  0  1  N  N  N  32.394  56.585  32.936  -2.821  -1.219  -0.068  O2   DGJ   3  
DGJ  C3   C3   C  0  1  N  N  R  33.197  57.009  30.672  -1.240   0.531  -0.602  C3   DGJ   4  
DGJ  O3   O3   O  0  1  N  N  N  31.881  56.671  30.190  -2.219   1.549  -0.389  O3   DGJ   5  
DGJ  C4   C4   C  0  1  N  N  S  33.837  58.088  29.798   0.149   1.072  -0.252  C4   DGJ   6  
DGJ  O4   O4   O  0  1  N  N  N  32.966  59.239  29.703   0.157   1.523   1.104  O4   DGJ   7  
DGJ  C5   C5   C  0  1  N  N  R  35.208  58.468  30.354   1.184  -0.041  -0.426  C5   DGJ   8  
DGJ  N5   N5   N  0  1  N  N  N  35.179  58.684  31.797   0.843  -1.169   0.451  N5   DGJ   9  
DGJ  C6   C6   C  0  1  N  N  N  35.735  59.716  29.677   2.571   0.489  -0.057  C6   DGJ  10  
DGJ  O6   O6   O  0  1  N  N  N  37.094  59.911  30.078   3.553  -0.513  -0.330  O6   DGJ  11  
DGJ  H1   H1   H  0  1  N  N  N  35.078  56.789  32.692  -0.676  -2.589   0.748  H1   DGJ  12  
DGJ  H1A  H1A  H  0  1  N  N  N  34.464  58.137  33.693  -0.454  -2.062  -0.938  H1A  DGJ  13  
DGJ  H2   H2   H  0  1  N  N  N  32.569  58.462  32.125  -1.571  -0.357   1.334  H2   DGJ  14  
DGJ  HO2  HO2  H  0  1  N  N  N  31.524  56.455  32.577  -3.081  -1.988   0.457  HO2  DGJ  15  
DGJ  H3   H3   H  0  1  N  N  N  33.820  56.103  30.629  -1.257   0.222  -1.648  H3   DGJ  16  
DGJ  HO3  HO3  H  0  1  N  N  N  31.941  56.363  29.293  -3.124   1.273  -0.587  HO3  DGJ  17  
DGJ  H4   H4   H  0  1  N  N  N  33.981  57.692  28.782   0.394   1.903  -0.914  H4   DGJ  18  
DGJ  HO4  HO4  H  0  1  N  N  N  33.374  59.902  29.158  -0.479   2.229   1.287  HO4  DGJ  19  
DGJ  H5   H5   H  0  1  N  N  N  35.876  57.619  30.145   1.188  -0.376  -1.463  H5   DGJ  20  
DGJ  HN5  HN5  H  0  1  N  N  N  34.709  59.556  31.935   0.872  -0.895   1.421  HN5  DGJ  21  
DGJ  H6   H6   H  0  1  N  N  N  35.682  59.598  28.585   2.788   1.380  -0.647  H6   DGJ  22  
DGJ  H6A  H6A  H  0  1  N  N  N  35.130  60.585  29.975   2.594   0.741   1.003  H6A  DGJ  23  
DGJ  HO6  HO6  H  0  1  N  N  N  37.439  60.692  29.661   4.458  -0.244  -0.120  HO6  DGJ  24  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DGJ  N5  C1   SING  N  N   1  
DGJ  C2  C1   SING  N  N   2  
DGJ  C1  H1   SING  N  N   3  
DGJ  C1  H1A  SING  N  N   4  
DGJ  C3  C2   SING  N  N   5  
DGJ  C2  O2   SING  N  N   6  
DGJ  C2  H2   SING  N  N   7  
DGJ  O2  HO2  SING  N  N   8  
DGJ  C4  C3   SING  N  N   9  
DGJ  O3  C3   SING  N  N  10  
DGJ  C3  H3   SING  N  N  11  
DGJ  O3  HO3  SING  N  N  12  
DGJ  O4  C4   SING  N  N  13  
DGJ  C4  C5   SING  N  N  14  
DGJ  C4  H4   SING  N  N  15  
DGJ  O4  HO4  SING  N  N  16  
DGJ  C6  C5   SING  N  N  17  
DGJ  C5  N5   SING  N  N  18  
DGJ  C5  H5   SING  N  N  19  
DGJ  N5  HN5  SING  N  N  20  
DGJ  C6  O6   SING  N  N  21  
DGJ  C6  H6   SING  N  N  22  
DGJ  C6  H6A  SING  N  N  23  
DGJ  O6  HO6  SING  N  N  24  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DGJ  SMILES            ACDLabs               12.01  "OC1C(NCC(O)C1O)CO"  
DGJ  InChI             InChI                 1.03   "InChI=1S/C6H13NO4/c8-2-3-5(10)6(11)4(9)1-7-3/h3-11H,1-2H2/t3-,4+,5+,6-/m1/s1"  
DGJ  InChIKey          InChI                 1.03   LXBIFEVIBLOUGU-DPYQTVNSSA-N  
DGJ  SMILES_CANONICAL  CACTVS                3.370  "OC[C@H]1NC[C@H](O)[C@@H](O)[C@H]1O"  
DGJ  SMILES            CACTVS                3.370  "OC[CH]1NC[CH](O)[CH](O)[CH]1O"  
DGJ  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.2  "C1[C@@H]([C@H]([C@H]([C@H](N1)CO)O)O)O"  
DGJ  SMILES            "OpenEye OEToolkits"  1.7.2  "C1C(C(C(C(N1)CO)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DGJ  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2R,3S,4R,5S)-2-(hydroxymethyl)piperidine-3,4,5-triol"  
DGJ  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.2  "(2R,3S,4R,5S)-2-(hydroxymethyl)piperidine-3,4,5-triol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DGJ  "Create component"  2011-07-01  RCSB  
DGJ  "Modify synonyms"   2011-07-11  RCSB  
DGJ  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     DGJ
_pdbx_chem_comp_synonyms.name        1-deoxygalactonojirimycin
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
