data_D8J
#

_chem_comp.id                                   D8J
_chem_comp.name                                 "2-amino-1,4-anhydro-2,5-dideoxy-5-[(4-fluorobenzene-1-carbonyl)amino]-D-arabinitol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C12 H15 F N2 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-10-23
_chem_comp.pdbx_modified_date                   2020-04-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       254.258
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    D8J
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5QBF
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
D8J  C4   C1   C  0  1  Y  N  N   -5.433   0.294   6.068  -2.529   0.842  -0.328  C4   D8J   1  
D8J  C5   C2   C  0  1  Y  N  N   -6.776   0.229   5.716  -2.368  -0.477   0.100  C5   D8J   2  
D8J  C6   C3   C  0  1  N  N  N   -7.429   1.377   5.018  -1.015  -1.062   0.204  C6   D8J   3  
D8J  N1   N1   N  0  1  N  N  N   -9.859   0.020   0.846   5.448   0.225   1.309  N1   D8J   4  
D8J  C7   C4   C  0  1  N  N  N   -7.223   3.134   3.342   1.407  -0.903  -0.014  C7   D8J   5  
D8J  C8   C5   C  0  1  N  N  R   -7.983   2.867   2.055   2.446   0.139  -0.432  C8   D8J   6  
D8J  C9   C6   C  0  1  N  N  S   -9.245   2.030   2.196   3.858  -0.489  -0.452  C9   D8J   7  
D8J  C10  C7   C  0  1  N  N  R   -9.393   1.440   0.807   4.777   0.639   0.069  C10  D8J   8  
D8J  C11  C8   C  0  1  N  N  N   -8.019   1.550   0.156   3.812   1.814   0.342  C11  D8J   9  
D8J  F    F1   F  0  1  N  N  N   -5.023  -2.819   7.820  -6.140   1.154  -0.192  F    D8J  10  
D8J  C2   C9   C  0  1  Y  N  N   -5.599  -1.819   7.106  -4.904   0.619  -0.098  C2   D8J  11  
D8J  C1   C10  C  0  1  Y  N  N   -6.918  -1.935   6.770  -4.748  -0.690   0.333  C1   D8J  12  
D8J  C3   C11  C  0  1  Y  N  N   -4.835  -0.736   6.770  -3.793   1.384  -0.422  C3   D8J  13  
D8J  C    C12  C  0  1  Y  N  N   -7.508  -0.900   6.067  -3.489  -1.241   0.431  C    D8J  14  
D8J  O    O1   O  0  1  N  N  N   -8.523   1.797   5.383  -0.877  -2.211   0.577  O    D8J  15  
D8J  N    N2   N  0  1  N  N  N   -6.758   1.927   4.004   0.065  -0.323  -0.116  N    D8J  16  
D8J  O1   O2   O  0  1  N  N  N   -7.156   2.102   1.168   2.525   1.193   0.552  O1   D8J  17  
D8J  O2   O3   O  0  1  N  N  N  -10.368   2.852   2.496   4.223  -0.857  -1.783  O2   D8J  18  
D8J  H1   H1   H  0  1  N  N  N   -4.850   1.159   5.790  -1.665   1.439  -0.581  H1   D8J  19  
D8J  H2   H2   H  0  1  N  N  N  -10.760  -0.024   1.277   6.050   0.956   1.655  H2   D8J  20  
D8J  H3   H3   H  0  1  N  N  N   -9.917  -0.337  -0.086   4.776  -0.052   2.008  H3   D8J  21  
D8J  H5   H5   H  0  1  N  N  N   -6.350   3.760   3.107   1.478  -1.771  -0.669  H5   D8J  22  
D8J  H6   H6   H  0  1  N  N  N   -7.887   3.675   4.032   1.592  -1.209   1.016  H6   D8J  23  
D8J  H7   H7   H  0  1  N  N  N   -8.245   3.829   1.590   2.199   0.549  -1.411  H7   D8J  24  
D8J  H8   H8   H  0  1  N  N  N   -9.102   1.235   2.943   3.901  -1.355   0.208  H8   D8J  25  
D8J  H9   H9   H  0  1  N  N  N  -10.111   2.045   0.233   5.512   0.913  -0.688  H9   D8J  26  
D8J  H10  H10  H  0  1  N  N  N   -7.661   0.558  -0.155   4.121   2.359   1.235  H10  D8J  27  
D8J  H11  H11  H  0  1  N  N  N   -8.060   2.216  -0.719   3.776   2.482  -0.518  H11  D8J  28  
D8J  H12  H12  H  0  1  N  N  N   -7.485  -2.812   7.046  -5.616  -1.278   0.594  H12  D8J  29  
D8J  H13  H13  H  0  1  N  N  N   -3.792  -0.686   7.046  -3.919   2.405  -0.748  H13  D8J  30  
D8J  H14  H14  H  0  1  N  N  N   -8.549  -0.970   5.788  -3.369  -2.262   0.763  H14  D8J  31  
D8J  H15  H15  H  0  1  N  N  N   -5.911   1.496   3.691  -0.045   0.594  -0.414  H15  D8J  32  
D8J  H16  H16  H  0  1  N  N  N  -10.269   3.218   3.367   5.101  -1.257  -1.854  H16  D8J  33  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
D8J  C11  C10  SING  N  N   1  
D8J  C11  O1   SING  N  N   2  
D8J  C10  N1   SING  N  N   3  
D8J  C10  C9   SING  N  N   4  
D8J  O1   C8   SING  N  N   5  
D8J  C8   C9   SING  N  N   6  
D8J  C8   C7   SING  N  N   7  
D8J  C9   O2   SING  N  N   8  
D8J  C7   N    SING  N  N   9  
D8J  N    C6   SING  N  N  10  
D8J  C6   O    DOUB  N  N  11  
D8J  C6   C5   SING  N  N  12  
D8J  C5   C    DOUB  Y  N  13  
D8J  C5   C4   SING  Y  N  14  
D8J  C    C1   SING  Y  N  15  
D8J  C4   C3   DOUB  Y  N  16  
D8J  C3   C2   SING  Y  N  17  
D8J  C1   C2   DOUB  Y  N  18  
D8J  C2   F    SING  N  N  19  
D8J  C4   H1   SING  N  N  20  
D8J  N1   H2   SING  N  N  21  
D8J  N1   H3   SING  N  N  22  
D8J  C7   H5   SING  N  N  23  
D8J  C7   H6   SING  N  N  24  
D8J  C8   H7   SING  N  N  25  
D8J  C9   H8   SING  N  N  26  
D8J  C10  H9   SING  N  N  27  
D8J  C11  H10  SING  N  N  28  
D8J  C11  H11  SING  N  N  29  
D8J  C1   H12  SING  N  N  30  
D8J  C3   H13  SING  N  N  31  
D8J  C    H14  SING  N  N  32  
D8J  N    H15  SING  N  N  33  
D8J  O2   H16  SING  N  N  34  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
D8J  SMILES            ACDLabs               12.01  "c1cc(F)ccc1C(=O)NCC2C(O)C(N)CO2"  
D8J  InChI             InChI                 1.03   "InChI=1S/C12H15FN2O3/c13-8-3-1-7(2-4-8)12(17)15-5-10-11(16)9(14)6-18-10/h1-4,9-11,16H,5-6,14H2,(H,15,17)/t9-,10-,11+/m1/s1"  
D8J  InChIKey          InChI                 1.03   FDPRGBDPIJLPIW-MXWKQRLJSA-N  
D8J  SMILES_CANONICAL  CACTVS                3.385  "N[C@@H]1CO[C@H](CNC(=O)c2ccc(F)cc2)[C@H]1O"  
D8J  SMILES            CACTVS                3.385  "N[CH]1CO[CH](CNC(=O)c2ccc(F)cc2)[CH]1O"  
D8J  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1cc(ccc1C(=O)NC[C@@H]2[C@H]([C@@H](CO2)N)O)F"  
D8J  SMILES            "OpenEye OEToolkits"  2.0.6  "c1cc(ccc1C(=O)NCC2C(C(CO2)N)O)F"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
D8J  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-amino-1,4-anhydro-2,5-dideoxy-5-[(4-fluorobenzene-1-carbonyl)amino]-D-arabinitol"  
D8J  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "~{N}-[[(2~{R},3~{S},4~{R})-4-azanyl-3-oxidanyl-oxolan-2-yl]methyl]-4-fluoranyl-benzamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
D8J  "Create component"  2017-10-23  RCSB  
D8J  "Initial release"   2020-04-22  RCSB  
##
