data_D0J
# 
_chem_comp.id                                    D0J 
_chem_comp.name                                  "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-{9-[4-(methoxymethyl)-1H-1,2,3-triazol-1-yl]nonyl}piperidine-3,4,5-triol" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H36 N4 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-10-11 
_chem_comp.pdbx_modified_date                    2018-09-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        400.513 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     D0J 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6B9P 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
D0J C0A C1  C 0 1 N N N -17.245 1.585  12.482 -4.126 0.708  -0.731 C0A D0J 1  
D0J C1A C2  C 0 1 N N N -18.306 -0.623 12.330 -5.336 -1.347 -0.313 C1A D0J 2  
D0J C2A C3  C 0 1 N N S -18.580 -1.992 13.002 -6.505 -1.954 0.465  C2A D0J 3  
D0J C3A C4  C 0 1 N N R -19.314 -1.725 14.315 -7.816 -1.334 -0.028 C3A D0J 4  
D0J C4A C5  C 0 1 N N R -18.389 -0.874 15.162 -7.750 0.185  0.147  C4A D0J 5  
D0J C5A C6  C 0 1 N N R -18.024 0.436  14.522 -6.544 0.731  -0.621 C5A D0J 6  
D0J C6A C7  C 0 1 N N N -17.082 1.194  15.490 -6.463 2.247  -0.432 C6A D0J 7  
D0J CAA C8  C 0 1 N N N -16.199 17.319 12.522 11.805 -1.838 -1.161 CAA D0J 8  
D0J CBA C9  C 0 1 N N N -17.213 15.242 12.914 10.328 -0.881 0.466  CBA D0J 9  
D0J CCA C10 C 0 1 Y N N -16.981 13.730 13.056 8.990  -0.203 0.612  CCA D0J 10 
D0J CDA C11 C 0 1 Y N N -17.088 12.838 12.087 8.112  0.079  -0.379 CDA D0J 11 
D0J CEA C12 C 0 1 N N N -16.823 10.390 11.881 5.854  1.172  -0.466 CEA D0J 12 
D0J CFA C13 C 0 1 N N N -16.255 9.153  12.601 4.615  0.546  0.178  CFA D0J 13 
D0J CGA C14 C 0 1 N N N -16.454 7.955  11.655 3.359  1.056  -0.533 CGA D0J 14 
D0J CHA C15 C 0 1 N N N -15.997 6.613  12.253 2.120  0.430  0.112  CHA D0J 15 
D0J CIA C16 C 0 1 N N N -16.363 5.513  11.240 0.864  0.940  -0.599 CIA D0J 16 
D0J CJA C17 C 0 1 N N N -16.062 4.100  11.768 -0.375 0.315  0.045  CJA D0J 17 
D0J CKA C18 C 0 1 N N N -16.571 3.101  10.718 -1.631 0.824  -0.665 CKA D0J 18 
D0J CLA C19 C 0 1 N N N -16.456 1.632  11.166 -2.870 0.199  -0.021 CLA D0J 19 
D0J N1A N1  N 0 1 N N N -17.481 0.284  13.146 -5.315 0.108  -0.112 N1A D0J 20 
D0J NXA N2  N 0 1 Y N N -16.646 13.092 14.170 8.433  0.232  1.748  NXA D0J 21 
D0J NYA N3  N 0 1 Y N N -16.551 11.871 13.888 7.289  0.754  1.478  NYA D0J 22 
D0J NZA N4  N 0 1 Y N N -16.796 11.671 12.659 7.056  0.684  0.214  NZA D0J 23 
D0J O2A O1  O 0 1 N N N -19.252 -2.933 12.155 -6.537 -3.367 0.253  O2A D0J 24 
D0J O3A O2  O 0 1 N N N -19.616 -2.951 14.998 -8.907 -1.856 0.734  O3A D0J 25 
D0J O4A O3  O 0 1 N N N -19.121 -0.545 16.351 -8.947 0.777  -0.361 O4A D0J 26 
D0J OLA O4  O 0 1 N N N -15.978 15.909 12.635 10.557 -1.190 -0.910 OLA D0J 27 
D0J O6A O5  O 0 1 N N N -16.695 2.518  15.142 -6.395 2.550  0.963  O6A D0J 28 
D0J H1  H1  H 0 1 N N N -16.704 2.218  13.201 -4.179 1.793  -0.642 H1  D0J 29 
D0J H2  H2  H 0 1 N N N -18.233 2.024  12.278 -4.085 0.431  -1.784 H2  D0J 30 
D0J H3  H3  H 0 1 N N N -17.786 -0.802 11.377 -4.400 -1.776 0.045  H3  D0J 31 
D0J H4  H4  H 0 1 N N N -19.271 -0.133 12.135 -5.453 -1.566 -1.374 H4  D0J 32 
D0J H5  H5  H 0 1 N N N -17.599 -2.414 13.266 -6.382 -1.748 1.528  H5  D0J 33 
D0J H6  H6  H 0 1 N N N -20.237 -1.164 14.106 -7.959 -1.574 -1.081 H6  D0J 34 
D0J H7  H7  H 0 1 N N N -17.478 -1.441 15.404 -7.647 0.426  1.206  H7  D0J 35 
D0J H8  H8  H 0 1 N N N -18.946 1.031  14.448 -6.655 0.502  -1.681 H8  D0J 36 
D0J H9  H9  H 0 1 N N N -17.588 1.246  16.465 -5.571 2.628  -0.930 H9  D0J 37 
D0J H10 H10 H 0 1 N N N -16.162 0.598  15.585 -7.347 2.715  -0.863 H10 D0J 38 
D0J H11 H11 H 0 1 N N N -15.246 17.824 12.308 11.844 -2.778 -0.609 H11 D0J 39 
D0J H12 H12 H 0 1 N N N -16.909 17.514 11.705 11.903 -2.039 -2.227 H12 D0J 40 
D0J H13 H13 H 0 1 N N N -16.612 17.702 13.467 12.621 -1.193 -0.836 H13 D0J 41 
D0J H14 H14 H 0 1 N N N -17.634 15.634 13.852 11.113 -0.215 0.824  H14 D0J 42 
D0J H15 H15 H 0 1 N N N -17.919 15.425 12.090 10.335 -1.800 1.051  H15 D0J 43 
D0J H16 H16 H 0 1 N N N -17.354 13.016 11.056 8.231  -0.134 -1.431 H16 D0J 44 
D0J H17 H17 H 0 1 N N N -16.239 10.542 10.961 5.894  0.895  -1.520 H17 D0J 45 
D0J H18 H18 H 0 1 N N N -17.870 10.177 11.620 5.801  2.257  -0.378 H18 D0J 46 
D0J H19 H19 H 0 1 N N N -16.794 8.984  13.545 4.668  -0.539 0.089  H19 D0J 47 
D0J H20 H20 H 0 1 N N N -15.185 9.296  12.811 4.574  0.823  1.231  H20 D0J 48 
D0J H21 H21 H 0 1 N N N -15.879 8.139  10.735 3.306  2.141  -0.444 H21 D0J 49 
D0J H22 H22 H 0 1 N N N -17.524 7.880  11.410 3.400  0.779  -1.586 H22 D0J 50 
D0J H23 H23 H 0 1 N N N -16.512 6.432  13.208 2.173  -0.655 0.023  H23 D0J 51 
D0J H24 H24 H 0 1 N N N -14.910 6.625  12.419 2.079  0.707  1.165  H24 D0J 52 
D0J H25 H25 H 0 1 N N N -15.784 5.676  10.319 0.811  2.025  -0.510 H25 D0J 53 
D0J H26 H26 H 0 1 N N N -17.438 5.584  11.016 0.905  0.663  -1.652 H26 D0J 54 
D0J H27 H27 H 0 1 N N N -16.580 3.937  12.724 -0.322 -0.771 -0.043 H27 D0J 55 
D0J H28 H28 H 0 1 N N N -14.979 3.975  11.912 -0.416 0.591  1.099  H28 D0J 56 
D0J H29 H29 H 0 1 N N N -15.983 3.232  9.798  -1.684 1.909  -0.576 H29 D0J 57 
D0J H30 H30 H 0 1 N N N -17.629 3.321  10.511 -1.590 0.547  -1.718 H30 D0J 58 
D0J H31 H31 H 0 1 N N N -16.901 0.959  10.419 -2.911 0.475  1.033  H31 D0J 59 
D0J H32 H32 H 0 1 N N N -15.404 1.354  11.330 -2.817 -0.887 -0.109 H32 D0J 60 
D0J H34 H34 H 0 1 N N N -19.387 -3.746 12.628 -5.735 -3.826 0.539  H34 D0J 61 
D0J H35 H35 H 0 1 N N N -20.071 -2.758 15.809 -9.005 -2.816 0.673  H35 D0J 62 
D0J H36 H36 H 0 1 N N N -18.580 -0.008 16.918 -9.753 0.474  0.079  H36 D0J 63 
D0J H37 H37 H 0 1 N N N -16.121 2.868  15.814 -6.341 3.496  1.157  H37 D0J 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
D0J CKA CLA SING N N 1  
D0J CKA CJA SING N N 2  
D0J CLA C0A SING N N 3  
D0J CIA CJA SING N N 4  
D0J CIA CHA SING N N 5  
D0J CGA CHA SING N N 6  
D0J CGA CFA SING N N 7  
D0J CEA CFA SING N N 8  
D0J CEA NZA SING N N 9  
D0J CDA NZA SING Y N 10 
D0J CDA CCA DOUB Y N 11 
D0J O2A C2A SING N N 12 
D0J C1A C2A SING N N 13 
D0J C1A N1A SING N N 14 
D0J C0A N1A SING N N 15 
D0J CAA OLA SING N N 16 
D0J OLA CBA SING N N 17 
D0J NZA NYA SING Y N 18 
D0J CBA CCA SING N N 19 
D0J C2A C3A SING N N 20 
D0J CCA NXA SING Y N 21 
D0J N1A C5A SING N N 22 
D0J NYA NXA DOUB Y N 23 
D0J C3A O3A SING N N 24 
D0J C3A C4A SING N N 25 
D0J C5A C4A SING N N 26 
D0J C5A C6A SING N N 27 
D0J O6A C6A SING N N 28 
D0J C4A O4A SING N N 29 
D0J C0A H1  SING N N 30 
D0J C0A H2  SING N N 31 
D0J C1A H3  SING N N 32 
D0J C1A H4  SING N N 33 
D0J C2A H5  SING N N 34 
D0J C3A H6  SING N N 35 
D0J C4A H7  SING N N 36 
D0J C5A H8  SING N N 37 
D0J C6A H9  SING N N 38 
D0J C6A H10 SING N N 39 
D0J CAA H11 SING N N 40 
D0J CAA H12 SING N N 41 
D0J CAA H13 SING N N 42 
D0J CBA H14 SING N N 43 
D0J CBA H15 SING N N 44 
D0J CDA H16 SING N N 45 
D0J CEA H17 SING N N 46 
D0J CEA H18 SING N N 47 
D0J CFA H19 SING N N 48 
D0J CFA H20 SING N N 49 
D0J CGA H21 SING N N 50 
D0J CGA H22 SING N N 51 
D0J CHA H23 SING N N 52 
D0J CHA H24 SING N N 53 
D0J CIA H25 SING N N 54 
D0J CIA H26 SING N N 55 
D0J CJA H27 SING N N 56 
D0J CJA H28 SING N N 57 
D0J CKA H29 SING N N 58 
D0J CKA H30 SING N N 59 
D0J CLA H31 SING N N 60 
D0J CLA H32 SING N N 61 
D0J O2A H34 SING N N 62 
D0J O3A H35 SING N N 63 
D0J O4A H36 SING N N 64 
D0J O6A H37 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
D0J SMILES           ACDLabs              12.01 "C(N1CC(C(O)C(O)C1CO)O)CCCCCCCCn2cc(COC)nn2"                                                                                                                     
D0J InChI            InChI                1.03  "InChI=1S/C19H36N4O5/c1-28-14-15-11-23(21-20-15)10-8-6-4-2-3-5-7-9-22-12-17(25)19(27)18(26)16(22)13-24/h11,16-19,24-27H,2-10,12-14H2,1H3/t16-,17+,18-,19-/m1/s1" 
D0J InChIKey         InChI                1.03  XGVWMUFCIMYWGD-FCGDIQPGSA-N                                                                                                                                      
D0J SMILES_CANONICAL CACTVS               3.385 "COCc1cn(CCCCCCCCCN2C[C@H](O)[C@@H](O)[C@H](O)[C@H]2CO)nn1"                                                                                                      
D0J SMILES           CACTVS               3.385 "COCc1cn(CCCCCCCCCN2C[CH](O)[CH](O)[CH](O)[CH]2CO)nn1"                                                                                                           
D0J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "COCc1cn(nn1)CCCCCCCCCN2C[C@@H]([C@H]([C@@H]([C@H]2CO)O)O)O"                                                                                                     
D0J SMILES           "OpenEye OEToolkits" 2.0.6 "COCc1cn(nn1)CCCCCCCCCN2CC(C(C(C2CO)O)O)O"                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
D0J "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-{9-[4-(methoxymethyl)-1H-1,2,3-triazol-1-yl]nonyl}piperidine-3,4,5-triol"          
D0J "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R},3~{R},4~{R},5~{S})-2-(hydroxymethyl)-1-[9-[4-(methoxymethyl)-1,2,3-triazol-1-yl]nonyl]piperidine-3,4,5-triol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
D0J "Create component" 2017-10-11 RCSB 
D0J "Initial release"  2018-09-26 RCSB 
# 
