data_C8J
# 
_chem_comp.id                                    C8J 
_chem_comp.name                                  "(2~{R})-5-[2-(3-aminocarbonylphenyl)ethyl-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]amino]-2-azanyl-pentanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H32 N8 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-09-19 
_chem_comp.pdbx_modified_date                    2018-01-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        528.561 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     C8J 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6B1A 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
C8J C4    C1  C 0 1 Y N N 2.844  1.842  -9.596  -4.439 -1.531 0.365  C4    C8J 1  
C8J C14   C2  C 0 1 N N N -7.320 -3.669 -7.963  4.731  -4.832 1.297  C14   C8J 2  
C8J C5    C3  C 0 1 Y N N 3.308  1.300  -10.792 -5.322 -0.723 1.100  C5    C8J 3  
C8J C6    C4  C 0 1 Y N N 4.638  0.933  -10.902 -6.478 -1.318 1.633  C6    C8J 4  
C8J C11   C5  C 0 1 Y N N -8.763 -2.272 -6.524  6.325  -3.142 0.396  C11   C8J 5  
C8J C7    C6  C 0 1 Y N N -6.822 -0.261 -6.285  4.365  -1.182 0.490  C7    C8J 6  
C8J C8    C7  C 0 1 Y N N 1.180  1.733  -10.985 -3.682 0.539  0.450  C8    C8J 7  
C8J C9    C8  C 0 1 Y N N -8.056 -0.138 -5.648  5.636  -0.877 0.038  C9    C8J 8  
C8J C10   C9  C 0 1 Y N N -9.029 -1.135 -5.764  6.612  -1.857 -0.014 C10   C8J 9  
C8J C12   C10 C 0 1 Y N N -7.534 -2.406 -7.159  5.046  -3.455 0.857  C12   C8J 10 
C8J C13   C11 C 0 1 Y N N -6.558 -1.403 -7.060  4.065  -2.464 0.902  C13   C8J 11 
C8J N1    N1  N 0 1 Y N N 5.457  1.112  -9.844  -6.680 -2.614 1.418  N1    C8J 12 
C8J C3    C12 C 0 1 N N N -5.834 0.882  -6.104  3.308  -0.108 0.543  C3    C8J 13 
C8J N3    N2  N 0 1 Y N N 3.704  2.009  -8.567  -4.725 -2.818 0.202  N3    C8J 14 
C8J N     N3  N 0 1 N N N -1.675 2.729  -1.571  0.140  5.309  1.773  N     C8J 15 
C8J CA    C13 C 0 1 N N R -2.903 2.499  -2.371  0.676  5.699  0.463  CA    C8J 16 
C8J C     C14 C 0 1 N N N -4.129 2.400  -1.470  1.302  7.066  0.562  C     C8J 17 
C8J O     O1  O 0 1 N N N -5.176 3.047  -1.703  1.631  7.503  1.640  O     C8J 18 
C8J CB    C15 C 0 1 N N N -3.001 3.572  -3.456  1.733  4.685  0.022  CB    C8J 19 
C8J CG    C16 C 0 1 N N N -3.157 2.005  -5.499  2.130  2.309  -0.641 CG    C8J 20 
C8J ND    N4  N 0 1 N N N -3.683 1.955  -6.887  1.521  0.975  -0.733 ND    C8J 21 
C8J CE    C17 C 0 1 N N N -4.696 0.892  -7.122  2.551  -0.072 -0.785 CE    C8J 22 
C8J OXT   O2  O 0 1 N N N -4.078 1.630  -0.493  1.494  7.799  -0.546 OXT   C8J 23 
C8J C1    C18 C 0 1 N N N -3.784 3.144  -4.699  1.073  3.323  -0.200 C1    C8J 24 
C8J "C1'" C19 C 0 1 N N R 0.666  2.695  -8.695  -2.251 -1.097 -0.832 "C1'" C8J 25 
C8J C2    C20 C 0 1 Y N N 4.993  1.643  -8.698  -5.820 -3.333 0.720  C2    C8J 26 
C8J "C2'" C21 C 0 1 N N R -0.250 3.797  -9.187  -2.560 -0.966 -2.341 "C2'" C8J 27 
C8J "C3'" C22 C 0 1 N N S -1.325 3.823  -8.112  -1.235 -0.456 -2.952 "C3'" C8J 28 
C8J "C4'" C23 C 0 1 N N R -1.333 2.401  -7.553  -0.284 -0.338 -1.740 "C4'" C8J 29 
C8J "C5'" C24 C 0 1 N N N -2.608 1.633  -7.835  0.621  0.886  -1.891 "C5'" C8J 30 
C8J N16   N5  N 0 1 N N N -6.116 -4.239 -8.033  5.681  -5.787 1.253  N16   C8J 31 
C8J N6    N6  N 0 1 N N N 5.106  0.390  -12.051 -7.385 -0.572 2.367  N6    C8J 32 
C8J N7    N7  N 0 1 Y N N 2.263  1.236  -11.640 -4.802 0.528  1.114  N7    C8J 33 
C8J N9    N8  N 0 1 Y N N 1.542  2.114  -9.742  -3.417 -0.707 -0.036 N9    C8J 34 
C8J O15   O3  O 0 1 N N N -8.288 -4.145 -8.527  3.616  -5.101 1.699  O15   C8J 35 
C8J "O2'" O4  O 0 1 N N N 0.467  5.007  -9.203  -2.909 -2.237 -2.892 "O2'" C8J 36 
C8J "O3'" O5  O 0 1 N N N -0.920 4.676  -7.044  -0.726 -1.396 -3.899 "O3'" C8J 37 
C8J "O4'" O6  O 0 1 N N N -0.261 1.726  -8.208  -1.156 -0.185 -0.600 "O4'" C8J 38 
C8J H1    H1  H 0 1 N N N -9.509 -3.047 -6.619  7.088  -3.906 0.355  H1    C8J 39 
C8J H2    H2  H 0 1 N N N 0.184  1.811  -11.396 -3.058 1.408  0.301  H2    C8J 40 
C8J H3    H3  H 0 1 N N N -8.263 0.741  -5.056  5.868  0.130  -0.275 H3    C8J 41 
C8J H4    H4  H 0 1 N N N -9.982 -1.025 -5.267  7.600  -1.614 -0.376 H4    C8J 42 
C8J H5    H5  H 0 1 N N N -5.614 -1.508 -7.574  3.073  -2.700 1.259  H5    C8J 43 
C8J H6    H6  H 0 1 N N N -5.396 0.804  -5.098  2.611  -0.324 1.353  H6    C8J 44 
C8J H7    H7  H 0 1 N N N -6.384 1.831  -6.192  3.781  0.858  0.719  H7    C8J 45 
C8J H8    H8  H 0 1 N N N -1.605 2.030  -0.859  -0.342 4.424  1.719  H8    C8J 46 
C8J H9    H9  H 0 1 N N N -0.874 2.678  -2.168  0.871  5.280  2.469  H9    C8J 47 
C8J H11   H11 H 0 1 N N N -2.794 1.530  -2.881  -0.132 5.722  -0.268 H11   C8J 48 
C8J H12   H12 H 0 1 N N N -1.981 3.840  -3.768  2.194  5.021  -0.907 H12   C8J 49 
C8J H13   H13 H 0 1 N N N -3.497 4.454  -3.024  2.497  4.596  0.795  H13   C8J 50 
C8J H14   H14 H 0 1 N N N -3.381 1.052  -4.998  2.940  2.288  0.088  H14   C8J 51 
C8J H15   H15 H 0 1 N N N -2.068 2.152  -5.536  2.525  2.596  -1.615 H15   C8J 52 
C8J H17   H17 H 0 1 N N N -5.128 1.041  -8.122  3.248  0.145  -1.595 H17   C8J 53 
C8J H18   H18 H 0 1 N N N -4.189 -0.083 -7.083  2.078  -1.038 -0.961 H18   C8J 54 
C8J H19   H19 H 0 1 N N N -4.908 1.648  -0.031  1.899  8.669  -0.432 H19   C8J 55 
C8J H20   H20 H 0 1 N N N -3.874 4.017  -5.362  0.612  2.987  0.729  H20   C8J 56 
C8J H21   H21 H 0 1 N N N -4.786 2.823  -4.377  0.309  3.411  -0.973 H21   C8J 57 
C8J H22   H22 H 0 1 N N N 1.284  3.081  -7.871  -1.953 -2.117 -0.593 H22   C8J 58 
C8J H23   H23 H 0 1 N N N 5.668  1.778  -7.866  -6.023 -4.383 0.569  H23   C8J 59 
C8J H24   H24 H 0 1 N N N -0.680 3.545  -10.167 -3.360 -0.244 -2.506 H24   C8J 60 
C8J H25   H25 H 0 1 N N N -2.306 4.095  -8.530  -1.381 0.518  -3.419 H25   C8J 61 
C8J H26   H26 H 0 1 N N N -1.162 2.438  -6.467  0.316  -1.243 -1.640 H26   C8J 62 
C8J H27   H27 H 0 1 N N N -2.950 1.878  -8.851  0.009  1.786  -1.945 H27   C8J 63 
C8J H28   H28 H 0 1 N N N -2.392 0.556  -7.771  1.211  0.792  -2.803 H28   C8J 64 
C8J H29   H29 H 0 1 N N N -5.991 -5.080 -8.559  6.571  -5.572 0.932  H29   C8J 65 
C8J H30   H30 H 0 1 N N N -5.339 -3.825 -7.559  5.475  -6.690 1.541  H30   C8J 66 
C8J H31   H31 H 0 1 N N N 6.078  0.178  -11.948 -7.226 0.373  2.517  H31   C8J 67 
C8J H32   H32 H 0 1 N N N 4.601  -0.450 -12.253 -8.179 -0.995 2.730  H32   C8J 68 
C8J H33   H33 H 0 1 N N N -0.098 5.706  -9.510  -3.112 -2.214 -3.837 H33   C8J 69 
C8J H34   H34 H 0 1 N N N -1.595 4.689  -6.375  -1.313 -1.554 -4.652 H34   C8J 70 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
C8J N6    C6    SING N N 1  
C8J N7    C8    DOUB Y N 2  
C8J N7    C5    SING Y N 3  
C8J C8    N9    SING Y N 4  
C8J C6    C5    DOUB Y N 5  
C8J C6    N1    SING Y N 6  
C8J C5    C4    SING Y N 7  
C8J N1    C2    DOUB Y N 8  
C8J N9    C4    SING Y N 9  
C8J N9    "C1'" SING N N 10 
C8J C4    N3    DOUB Y N 11 
C8J "O2'" "C2'" SING N N 12 
C8J "C2'" "C1'" SING N N 13 
C8J "C2'" "C3'" SING N N 14 
C8J C2    N3    SING Y N 15 
C8J "C1'" "O4'" SING N N 16 
C8J O15   C14   DOUB N N 17 
C8J "O4'" "C4'" SING N N 18 
C8J "C3'" "C4'" SING N N 19 
C8J "C3'" "O3'" SING N N 20 
C8J N16   C14   SING N N 21 
C8J C14   C12   SING N N 22 
C8J "C5'" "C4'" SING N N 23 
C8J "C5'" ND    SING N N 24 
C8J C12   C13   DOUB Y N 25 
C8J C12   C11   SING Y N 26 
C8J CE    ND    SING N N 27 
C8J CE    C3    SING N N 28 
C8J C13   C7    SING Y N 29 
C8J ND    CG    SING N N 30 
C8J C11   C10   DOUB Y N 31 
C8J C7    C3    SING N N 32 
C8J C7    C9    DOUB Y N 33 
C8J C10   C9    SING Y N 34 
C8J CG    C1    SING N N 35 
C8J C1    CB    SING N N 36 
C8J CB    CA    SING N N 37 
C8J CA    N     SING N N 38 
C8J CA    C     SING N N 39 
C8J O     C     DOUB N N 40 
C8J C     OXT   SING N N 41 
C8J C11   H1    SING N N 42 
C8J C8    H2    SING N N 43 
C8J C9    H3    SING N N 44 
C8J C10   H4    SING N N 45 
C8J C13   H5    SING N N 46 
C8J C3    H6    SING N N 47 
C8J C3    H7    SING N N 48 
C8J N     H8    SING N N 49 
C8J N     H9    SING N N 50 
C8J CA    H11   SING N N 51 
C8J CB    H12   SING N N 52 
C8J CB    H13   SING N N 53 
C8J CG    H14   SING N N 54 
C8J CG    H15   SING N N 55 
C8J CE    H17   SING N N 56 
C8J CE    H18   SING N N 57 
C8J OXT   H19   SING N N 58 
C8J C1    H20   SING N N 59 
C8J C1    H21   SING N N 60 
C8J "C1'" H22   SING N N 61 
C8J C2    H23   SING N N 62 
C8J "C2'" H24   SING N N 63 
C8J "C3'" H25   SING N N 64 
C8J "C4'" H26   SING N N 65 
C8J "C5'" H27   SING N N 66 
C8J "C5'" H28   SING N N 67 
C8J N16   H29   SING N N 68 
C8J N16   H30   SING N N 69 
C8J N6    H31   SING N N 70 
C8J N6    H32   SING N N 71 
C8J "O2'" H33   SING N N 72 
C8J "O3'" H34   SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
C8J SMILES           ACDLabs              12.01 "c12ncnc(c1ncn2C3OC(C(C3O)O)CN(CCCC(N)C(O)=O)CCc4cccc(C(N)=O)c4)N" 
C8J InChI            InChI                1.03  
"InChI=1S/C24H32N8O6/c25-15(24(36)37)5-2-7-31(8-6-13-3-1-4-14(9-13)21(27)35)10-16-18(33)19(34)23(38-16)32-12-30-17-20(26)28-11-29-22(17)32/h1,3-4,9,11-12,15-16,18-19,23,33-34H,2,5-8,10,25H2,(H2,27,35)(H,36,37)(H2,26,28,29)/t15-,16-,18-,19-,23-/m1/s1" 
C8J InChIKey         InChI                1.03  HSCPXDPGPWYINM-AXKRAVOISA-N 
C8J SMILES_CANONICAL CACTVS               3.385 "N[C@H](CCCN(CCc1cccc(c1)C(N)=O)C[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34)C(O)=O" 
C8J SMILES           CACTVS               3.385 "N[CH](CCCN(CCc1cccc(c1)C(N)=O)C[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34)C(O)=O" 
C8J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cc(cc(c1)C(=O)N)CCN(CCC[C@H](C(=O)O)N)C[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O" 
C8J SMILES           "OpenEye OEToolkits" 2.0.6 "c1cc(cc(c1)C(=O)N)CCN(CCCC(C(=O)O)N)CC2C(C(C(O2)n3cnc4c3ncnc4N)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
C8J "SYSTEMATIC NAME" ACDLabs              12.01 "(2R)-2-amino-5-({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}[2-(3-carbamoylphenyl)ethyl]amino)pentanoic acid (non-preferred name)" 
C8J "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R})-5-[2-(3-aminocarbonylphenyl)ethyl-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]amino]-2-azanyl-pentanoic acid"           
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
C8J "Create component" 2017-09-19 RCSB 
C8J "Initial release"  2018-01-31 RCSB 
# 
