data_B7J
#

_chem_comp.id                                   B7J
_chem_comp.name                                 "2'-deoxy-5-formylcytidine 5'-(tetrahydrogen triphosphate)"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H16 N3 O14 P3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        5-FodCTP
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-08-03
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       495.167
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    B7J
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5WNZ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
B7J  C10  C1   C  0  1  N  N  R   3.814   6.537  11.840   1.831   2.148   0.800  C10  B7J   1  
B7J  C26  C2   C  0  1  N  N  N   7.644   7.947   9.527   4.675  -0.140  -0.943  C26  B7J   2  
B7J  C01  C3   C  0  1  N  N  N   9.208   6.821  13.354   6.783  -2.953   1.322  C01  B7J   3  
B7J  O02  O1   O  0  1  N  N  N  10.321   6.377  13.539   7.394  -3.837   0.760  O02  B7J   4  
B7J  C03  C4   C  0  1  N  N  N   8.659   7.209  12.054   6.040  -1.963   0.538  C03  B7J   5  
B7J  C04  C5   C  0  1  N  N  N   7.320   7.173  11.780   5.245  -1.010   1.158  C04  B7J   6  
B7J  N05  N1   N  0  1  N  N  N   6.769   7.539  10.572   4.580  -0.119   0.396  N05  B7J   7  
B7J  C06  C6   C  0  1  N  N  R   5.342   7.449  10.304   3.737   0.891   1.040  C06  B7J   8  
B7J  C07  C7   C  0  1  N  N  N   4.958   5.973   9.917   4.260   2.312   0.724  C07  B7J   9  
B7J  C08  C8   C  0  1  N  N  S   4.492   5.357  11.240   2.977   3.157   0.564  C08  B7J  10  
B7J  O09  O2   O  0  1  N  N  N   3.526   4.345  11.010   2.936   4.198   1.541  O09  B7J  11  
B7J  C11  C9   C  0  1  N  N  N   3.628   6.373  13.347   0.656   2.448  -0.132  C11  B7J  12  
B7J  O12  O3   O  0  1  N  N  N   4.826   6.229  14.024  -0.422   1.555   0.158  O12  B7J  13  
B7J  P13  P1   P  0  1  N  N  N   5.121   4.990  15.028  -1.824   1.587  -0.634  P13  B7J  14  
B7J  O14  O4   O  0  1  N  N  N   6.486   5.342  15.643  -2.399   2.948  -0.564  O14  B7J  15  
B7J  O15  O5   O  0  1  N  N  N   3.968   5.047  16.019  -1.579   1.185  -2.174  O15  B7J  16  
B7J  O16  O6   O  0  1  N  N  N   5.126   3.763  14.149  -2.843   0.538   0.039  O16  B7J  17  
B7J  P17  P2   P  0  1  N  N  N   4.014   2.438  14.075  -4.433   0.305  -0.058  P17  B7J  18  
B7J  O18  O7   O  0  1  N  N  N   2.663   3.054  14.434  -5.196   1.447   0.783  O18  B7J  19  
B7J  O19  O8   O  0  1  N  N  N   4.034   2.049  12.607  -4.856   0.370  -1.475  O19  B7J  20  
B7J  O20  O9   O  0  1  N  N  N   4.459   1.193  14.982  -4.802  -1.142   0.545  O20  B7J  21  
B7J  P21  P3   P  0  1  N  N  N   4.051   0.878  16.483  -6.064  -2.129   0.392  P21  B7J  22  
B7J  O22  O10  O  0  1  N  N  N   3.386   2.150  17.028  -6.086  -3.167   1.622  O22  B7J  23  
B7J  O23  O11  O  0  1  N  N  N   3.134  -0.306  16.445  -7.314  -1.336   0.393  O23  B7J  24  
B7J  O24  O12  O  0  1  N  N  N   5.345   0.558  17.228  -5.945  -2.941  -0.993  O24  B7J  25  
B7J  O25  O13  O  0  1  N  N  N   4.635   7.664  11.518   2.403   0.858   0.490  O25  B7J  26  
B7J  O27  O14  O  0  1  N  N  N   7.179   8.256   8.452   4.059   0.691  -1.589  O27  B7J  27  
B7J  N28  N2   N  0  1  N  N  N   8.984   7.979   9.780   5.423  -1.031  -1.591  N28  B7J  28  
B7J  C29  C10  C  0  1  N  N  N   9.515   7.640  10.979   6.114  -1.948  -0.929  C29  B7J  29  
B7J  N30  N3   N  0  1  N  N  N  10.851   7.694  11.137   6.884  -2.864  -1.600  N30  B7J  30  
B7J  H1   H1   H  0  1  N  N  N   2.823   6.654  11.377   1.507   2.178   1.840  H1   B7J  31  
B7J  H2   H2   H  0  1  N  N  N   8.571   6.940  14.218   6.786  -2.895   2.400  H2   B7J  32  
B7J  H3   H3   H  0  1  N  N  N   6.653   6.837  12.560   5.159  -0.983   2.235  H3   B7J  33  
B7J  H4   H4   H  0  1  N  N  N   5.030   8.142   9.509   3.708   0.728   2.118  H4   B7J  34  
B7J  H5   H5   H  0  1  N  N  N   4.148   5.961   9.173   4.865   2.689   1.550  H5   B7J  35  
B7J  H6   H6   H  0  1  N  N  N   5.830   5.433   9.519   4.835   2.311  -0.202  H6   B7J  36  
B7J  H7   H7   H  0  1  N  N  N   5.344   5.015  11.847   2.917   3.574  -0.442  H7   B7J  37  
B7J  H8   H8   H  0  1  N  N  N   3.720   3.592  11.555   3.668   4.827   1.477  H8   B7J  38  
B7J  H9   H9   H  0  1  N  N  N   3.110   7.262  13.736   0.326   3.476   0.018  H9   B7J  39  
B7J  H10  H10  H  0  1  N  N  N   3.012   5.480  13.530   0.970   2.314  -1.167  H10  B7J  40  
B7J  H11  H11  H  0  1  N  N  N   4.297   5.298  16.874  -1.203   0.303  -2.295  H11  B7J  41  
B7J  H12  H12  H  0  1  N  N  N   2.107   3.069  13.664  -4.966   1.463   1.722  H12  B7J  42  
B7J  H13  H13  H  0  1  N  N  N   2.482   1.963  17.254  -6.822  -3.794   1.595  H13  B7J  43  
B7J  H14  H14  H  0  1  N  N  N   5.323  -0.342  17.530  -5.148  -3.484  -1.064  H14  B7J  44  
B7J  H15  H15  H  0  1  N  N  N  11.433   7.981  10.376   6.987  -2.798  -2.563  H15  B7J  45  
B7J  H16  H16  H  0  1  N  N  N  11.261   7.447  12.015   7.324  -3.577  -1.113  H16  B7J  46  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
B7J  O27  C26  DOUB  N  N   1  
B7J  C26  N28  SING  N  N   2  
B7J  C26  N05  SING  N  N   3  
B7J  N28  C29  DOUB  N  N   4  
B7J  C07  C06  SING  N  N   5  
B7J  C07  C08  SING  N  N   6  
B7J  C06  N05  SING  N  N   7  
B7J  C06  O25  SING  N  N   8  
B7J  N05  C04  SING  N  N   9  
B7J  C29  N30  SING  N  N  10  
B7J  C29  C03  SING  N  N  11  
B7J  O09  C08  SING  N  N  12  
B7J  C08  C10  SING  N  N  13  
B7J  O25  C10  SING  N  N  14  
B7J  C04  C03  DOUB  N  N  15  
B7J  C10  C11  SING  N  N  16  
B7J  C03  C01  SING  N  N  17  
B7J  O19  P17  DOUB  N  N  18  
B7J  C11  O12  SING  N  N  19  
B7J  C01  O02  DOUB  N  N  20  
B7J  O12  P13  SING  N  N  21  
B7J  P17  O16  SING  N  N  22  
B7J  P17  O18  SING  N  N  23  
B7J  P17  O20  SING  N  N  24  
B7J  O16  P13  SING  N  N  25  
B7J  O20  P21  SING  N  N  26  
B7J  P13  O14  DOUB  N  N  27  
B7J  P13  O15  SING  N  N  28  
B7J  O23  P21  DOUB  N  N  29  
B7J  P21  O22  SING  N  N  30  
B7J  P21  O24  SING  N  N  31  
B7J  C10  H1   SING  N  N  32  
B7J  C01  H2   SING  N  N  33  
B7J  C04  H3   SING  N  N  34  
B7J  C06  H4   SING  N  N  35  
B7J  C07  H5   SING  N  N  36  
B7J  C07  H6   SING  N  N  37  
B7J  C08  H7   SING  N  N  38  
B7J  O09  H8   SING  N  N  39  
B7J  C11  H9   SING  N  N  40  
B7J  C11  H10  SING  N  N  41  
B7J  O15  H11  SING  N  N  42  
B7J  O18  H12  SING  N  N  43  
B7J  O22  H13  SING  N  N  44  
B7J  O24  H14  SING  N  N  45  
B7J  N30  H15  SING  N  N  46  
B7J  N30  H16  SING  N  N  47  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
B7J  SMILES            ACDLabs               12.01  "C2(COP(=O)(O)OP(O)(OP(O)(O)=O)=O)C(CC(N1C(N=C(C(C=O)=C1)N)=O)O2)O"  
B7J  InChI             InChI                 1.03   "InChI=1S/C10H16N3O14P3/c11-9-5(3-14)2-13(10(16)12-9)8-1-6(15)7(25-8)4-24-29(20,21)27-30(22,23)26-28(17,18)19/h2-3,6-8,15H,1,4H2,(H,20,21)(H,22,23)(H2,11,12,16)(H2,17,18,19)/t6-,7+,8+/m0/s1"  
B7J  InChIKey          InChI                 1.03   UIFNWSMURHAIJK-XLPZGREQSA-N  
B7J  SMILES_CANONICAL  CACTVS                3.385  "NC1=NC(=O)N(C=C1C=O)[C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2"  
B7J  SMILES            CACTVS                3.385  "NC1=NC(=O)N(C=C1C=O)[CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2"  
B7J  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C1[C@@H]([C@H](O[C@H]1N2C=C(C(=NC2=O)N)C=O)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O"  
B7J  SMILES            "OpenEye OEToolkits"  2.0.6  "C1C(C(OC1N2C=C(C(=NC2=O)N)C=O)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
B7J  "SYSTEMATIC NAME"  ACDLabs               12.01  "2'-deoxy-5-formylcytidine 5'-(tetrahydrogen triphosphate)"  
B7J  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "[[(2~{R},3~{S},5~{R})-5-(4-azanyl-5-methanoyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
B7J  "Create component"  2017-08-03  RCSB  
B7J  "Initial release"   2017-09-13  RCSB  
B7J  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     B7J
_pdbx_chem_comp_synonyms.name        5-FodCTP
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
