data_9WJ
#

_chem_comp.id                                   9WJ
_chem_comp.name                                 "4-acetamido-4,6-dideoxy-beta-D-mannopyranose"
_chem_comp.type                                 "D-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C8 H15 N O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;4-(acetylamino)-4,6-dideoxy-beta-D-mannopyranose; 4-(acetylamino)-4-deoxy-beta-D-rhamnopyranose;
4-acetamido-4,6-dideoxy-beta-D-mannose; 4-acetamido-4,6-dideoxy-D-mannose; 4-acetamido-4,6-dideoxy-mannose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-06-19
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       205.208
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    9WJ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5W6S
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  9WJ  "4-(acetylamino)-4,6-dideoxy-beta-D-mannopyranose"  PDB  ?  
2  9WJ  "4-(acetylamino)-4-deoxy-beta-D-rhamnopyranose"     PDB  ?  
3  9WJ  "4-acetamido-4,6-dideoxy-beta-D-mannose"            PDB  ?  
4  9WJ  "4-acetamido-4,6-dideoxy-D-mannose"                 PDB  ?  
5  9WJ  "4-acetamido-4,6-dideoxy-mannose"                   PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9WJ  O3   O3   O  0  1  N  N  N  -19.806  -43.780  -4.364   0.170  -2.538  -0.084  O3   9WJ   1  
9WJ  C3   C3   C  0  1  N  N  S  -20.232  -42.775  -5.283   0.553  -1.251  -0.573  C3   9WJ   2  
9WJ  C4   C4   C  0  1  N  N  S  -21.302  -43.303  -6.249  -0.415  -0.191  -0.038  C4   9WJ   3  
9WJ  C7   C7   C  0  1  N  N  N  -21.248  -45.359  -7.429  -2.839  -0.016   0.131  C7   9WJ   4  
9WJ  O7   O7   O  0  1  N  N  N  -22.272  -45.680  -6.843  -2.694   0.598   1.166  O7   9WJ   5  
9WJ  C8   C8   C  0  1  N  N  N  -20.542  -46.256  -8.402  -4.225  -0.288  -0.396  C8   9WJ   6  
9WJ  C6   C6   C  0  1  N  N  N  -23.263  -42.763  -7.809  -0.879   2.262   0.078  C6   9WJ   7  
9WJ  C5   C5   C  0  1  N  N  R  -22.090  -42.217  -7.000   0.048   1.192  -0.502  C5   9WJ   8  
9WJ  O5   O5   O  0  1  N  N  N  -22.522  -41.215  -6.083   1.384   1.423  -0.049  O5   9WJ   9  
9WJ  C1   C1   C  0  1  N  N  R  -21.273  -40.692  -5.615   2.341   0.490  -0.556  C1   9WJ  10  
9WJ  C2   C2   C  0  1  N  N  S  -20.833  -41.643  -4.489   1.970  -0.921  -0.094  C2   9WJ  11  
9WJ  O2   O2   O  0  1  N  N  N  -21.913  -42.247  -3.753   2.018  -0.985   1.333  O2   9WJ  12  
9WJ  N4   N4   N  0  1  N  N  N  -20.695  -44.175  -7.223  -1.762  -0.455  -0.550  N4   9WJ  13  
9WJ  O1   O1   O  0  1  N  Y  N  -21.352  -39.350  -5.115   3.640   0.826  -0.065  O1   9WJ  14  
9WJ  HO3  H1   H  0  1  N  Y  N  -19.146  -43.420  -3.783   0.745  -3.258  -0.379  HO3  9WJ  15  
9WJ  H3   H2   H  0  1  N  N  N  -19.378  -42.399  -5.865   0.527  -1.253  -1.663  H3   9WJ  16  
9WJ  H4   H3   H  0  1  N  N  N  -22.024  -43.885  -5.657  -0.426  -0.225   1.051  H4   9WJ  17  
9WJ  H4A  H4   H  0  1  N  N  N  -21.088  -47.207  -8.487  -4.156  -0.847  -1.329  H4A  9WJ  18  
9WJ  H5A  H5   H  0  1  N  N  N  -20.501  -45.768  -9.387  -4.784  -0.870   0.336  H5A  9WJ  19  
9WJ  H6   H6   H  0  1  N  N  N  -19.520  -46.450  -8.046  -4.737   0.658  -0.576  H6   9WJ  20  
9WJ  H61  H7   H  0  1  N  N  N  -23.777  -41.933  -8.316  -0.851   2.216   1.167  H61  9WJ  21  
9WJ  H62  H8   H  0  1  N  N  N  -22.891  -43.477  -8.559  -0.549   3.247  -0.253  H62  9WJ  22  
9WJ  H9   H9   H  0  1  N  N  N  -23.967  -43.273  -7.135  -1.898   2.085  -0.267  H9   9WJ  23  
9WJ  H5   H10  H  0  1  N  N  N  -21.394  -41.753  -7.715   0.020   1.238  -1.591  H5   9WJ  24  
9WJ  H1   H11  H  0  1  N  N  N  -20.526  -40.743  -6.421   2.343   0.527  -1.645  H1   9WJ  25  
9WJ  H2   H12  H  0  1  N  N  N  -20.088  -41.166  -3.835   2.673  -1.639  -0.516  H2   9WJ  26  
9WJ  HO2  H13  H  0  1  N  Y  N  -21.559  -42.816  -3.080   2.888  -0.787   1.706  HO2  9WJ  27  
9WJ  H14  H14  H  0  1  N  N  N  -19.879  -43.893  -7.728  -1.879  -0.946  -1.378  H14  9WJ  28  
9WJ  HO1  H15  H  0  1  N  Y  N  -20.493  -39.069  -4.823   3.940   1.710  -0.319  HO1  9WJ  29  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9WJ  C8  C7   SING  N  N   1  
9WJ  C6  C5   SING  N  N   2  
9WJ  C7  N4   SING  N  N   3  
9WJ  C7  O7   DOUB  N  N   4  
9WJ  N4  C4   SING  N  N   5  
9WJ  C5  C4   SING  N  N   6  
9WJ  C5  O5   SING  N  N   7  
9WJ  C4  C3   SING  N  N   8  
9WJ  O5  C1   SING  N  N   9  
9WJ  C1  C2   SING  N  N  10  
9WJ  C3  C2   SING  N  N  11  
9WJ  C3  O3   SING  N  N  12  
9WJ  C2  O2   SING  N  N  13  
9WJ  C1  O1   SING  N  N  14  
9WJ  O3  HO3  SING  N  N  15  
9WJ  C3  H3   SING  N  N  16  
9WJ  C4  H4   SING  N  N  17  
9WJ  C8  H4A  SING  N  N  18  
9WJ  C8  H5A  SING  N  N  19  
9WJ  C8  H6   SING  N  N  20  
9WJ  C6  H61  SING  N  N  21  
9WJ  C6  H62  SING  N  N  22  
9WJ  C6  H9   SING  N  N  23  
9WJ  C5  H5   SING  N  N  24  
9WJ  C1  H1   SING  N  N  25  
9WJ  C2  H2   SING  N  N  26  
9WJ  O2  HO2  SING  N  N  27  
9WJ  N4  H14  SING  N  N  28  
9WJ  O1  HO1  SING  N  N  29  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9WJ  SMILES            ACDLabs               12.01  "OC1C(C(OC(C1NC(=O)C)C)O)O"  
9WJ  InChI             InChI                 1.03   "InChI=1S/C8H15NO5/c1-3-5(9-4(2)10)6(11)7(12)8(13)14-3/h3,5-8,11-13H,1-2H3,(H,9,10)/t3-,5-,6+,7+,8-/m1/s1"  
9WJ  InChIKey          InChI                 1.03   LMIZXKMXHCOVTQ-NDBSEGGWSA-N  
9WJ  SMILES_CANONICAL  CACTVS                3.385  "C[C@H]1O[C@@H](O)[C@@H](O)[C@@H](O)[C@@H]1NC(C)=O"  
9WJ  SMILES            CACTVS                3.385  "C[CH]1O[CH](O)[CH](O)[CH](O)[CH]1NC(C)=O"  
9WJ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C[C@@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)O)O)O)NC(=O)C"  
9WJ  SMILES            "OpenEye OEToolkits"  2.0.6  "CC1C(C(C(C(O1)O)O)O)NC(=O)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9WJ  "SYSTEMATIC NAME"                      ACDLabs               12.01  "4-(acetylamino)-4,6-dideoxy-beta-D-mannopyranose"  
9WJ  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  2.0.6  "~{N}-[(2~{R},3~{S},4~{S},5~{S},6~{R})-2-methyl-4,5,6-tris(oxidanyl)oxan-3-yl]ethanamide"  
9WJ  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    DRhap[4NAc]b  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
9WJ  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
9WJ  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
9WJ  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
9WJ  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9WJ  "Create component"          2017-06-19  RCSB  
9WJ  "Initial release"           2018-10-24  RCSB  
9WJ  "Other modification"        2020-07-03  RCSB  
9WJ  "Modify name"               2020-07-17  RCSB  
9WJ  "Modify synonyms"           2020-07-17  RCSB  
9WJ  "Modify internal type"      2020-07-17  RCSB  
9WJ  "Modify linking type"       2020-07-17  RCSB  
9WJ  "Modify atom id"            2020-07-17  RCSB  
9WJ  "Modify component atom id"  2020-07-17  RCSB  
9WJ  "Modify leaving atom flag"  2020-07-17  RCSB  
##
