data_9NJ
# 
_chem_comp.id                                    9NJ 
_chem_comp.name                                  "trans-4-({(2S)-2-cyclohexyl-2-[2-(2,6-dimethoxypyridin-3-yl)-5-fluoro-1H-benzimidazol-1-yl]acetyl}amino)cyclohexane-1-carboxylic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H35 F N4 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-05-19 
_chem_comp.pdbx_modified_date                    2017-06-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        538.610 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9NJ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5Q1F 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9NJ N3  N1  N 0 1 Y N N 13.137 26.066 2.355  -3.306 0.950  0.952  N3  9NJ 1  
9NJ C4  C1  C 0 1 Y N N 15.219 24.873 2.945  -1.141 1.587  -0.065 C4  9NJ 2  
9NJ C5  C2  C 0 1 Y N N 11.797 25.965 2.728  -4.025 -0.171 1.205  C5  9NJ 3  
9NJ C6  C3  C 0 1 N N N 12.550 21.899 4.370  0.280  -1.127 0.268  C6  9NJ 4  
9NJ C7  C4  C 0 1 Y N N 11.620 24.937 3.650  -3.275 -1.262 0.729  C7  9NJ 5  
9NJ C8  C5  C 0 1 Y N N 15.760 23.895 2.085  -1.254 2.947  0.252  C8  9NJ 6  
9NJ C10 C6  C 0 1 N N S 13.310 23.259 4.742  -1.015 -1.479 -0.416 C10 9NJ 7  
9NJ C13 C7  C 0 1 Y N N 16.122 25.601 3.722  -0.025 1.150  -0.788 C13 9NJ 8  
9NJ C15 C8  C 0 1 Y N N 17.910 24.357 2.731  0.738  3.417  -0.820 C15 9NJ 9  
9NJ C20 C9  C 0 1 N N N 13.180 23.640 6.240  -0.923 -1.118 -1.900 C20 9NJ 10 
9NJ C21 C10 C 0 1 Y N N 9.468  26.387 2.862  -5.746 -1.688 1.918  C21 9NJ 11 
9NJ C22 C11 C 0 1 N N N 10.596 19.262 0.630  4.621  0.073  0.845  C22 9NJ 12 
9NJ C24 C12 C 0 1 Y N N 17.489 25.351 3.623  0.921  2.083  -1.166 C24 9NJ 13 
9NJ C26 C13 C 0 1 N N N 11.278 20.640 2.645  2.666  -1.468 0.627  C26 9NJ 14 
9NJ C36 C14 C 0 1 N N N 19.717 22.875 2.184  1.424  5.691  -0.807 C36 9NJ 15 
9NJ O32 O1  O 0 1 N N N 19.267 24.136 2.655  1.665  4.335  -1.190 O32 9NJ 16 
9NJ O25 O2  O 0 1 N N N 14.876 23.195 1.342  -2.325 3.387  0.956  O25 9NJ 17 
9NJ C35 C15 C 0 1 N N N 15.399 22.229 0.424  -2.380 4.785  1.247  C35 9NJ 18 
9NJ N9  N2  N 0 1 Y N N 17.069 23.638 1.972  -0.323 3.805  -0.131 N9  9NJ 19 
9NJ C1  C16 C 0 1 Y N N 13.760 25.116 3.036  -2.180 0.628  0.362  C1  9NJ 20 
9NJ C14 C17 C 0 1 Y N N 10.694 26.708 2.323  -5.269 -0.400 1.802  C14 9NJ 21 
9NJ F29 F1  F 0 1 N N N 8.390  27.111 2.471  -6.947 -1.908 2.494  F29 9NJ 22 
9NJ C27 C18 C 0 1 Y N N 9.275  25.370 3.776  -5.000 -2.760 1.446  C27 9NJ 23 
9NJ C16 C19 C 0 1 Y N N 10.373 24.622 4.185  -3.771 -2.551 0.855  C16 9NJ 24 
9NJ N2  N3  N 0 1 Y N N 12.898 24.390 3.837  -2.113 -0.730 0.201  N2  9NJ 25 
9NJ C33 C20 C 0 1 N N N 14.099 22.787 7.125  0.336  -1.748 -2.500 C33 9NJ 26 
9NJ C38 C21 C 0 1 N N N 13.941 23.136 8.610  0.428  -1.387 -3.984 C38 9NJ 27 
9NJ C39 C22 C 0 1 N N N 14.212 24.619 8.870  -0.806 -1.918 -4.716 C39 9NJ 28 
9NJ C37 C23 C 0 1 N N N 13.343 25.522 7.964  -2.065 -1.288 -4.116 C37 9NJ 29 
9NJ C34 C24 C 0 1 N N N 13.489 25.133 6.481  -2.157 -1.649 -2.632 C34 9NJ 30 
9NJ O17 O3  O 0 1 N N N 12.481 20.981 5.184  0.292  -0.301 1.156  O17 9NJ 31 
9NJ N11 N4  N 0 1 N N N 12.008 21.825 3.137  1.426  -1.730 -0.107 N11 9NJ 32 
9NJ C30 C25 C 0 1 N N N 9.849  20.601 3.169  3.619  -2.653 0.458  C30 9NJ 33 
9NJ C23 C26 C 0 1 N N N 9.121  19.312 2.727  4.914  -2.379 1.225  C23 9NJ 34 
9NJ C18 C27 C 0 1 N N N 9.130  19.152 1.175  5.574  -1.112 0.677  C18 9NJ 35 
9NJ C31 C28 C 0 1 N N N 11.284 20.556 1.128  3.326  -0.201 0.079  C31 9NJ 36 
9NJ C12 C29 C 0 1 N N N 8.451  17.857 0.742  6.850  -0.842 1.432  C12 9NJ 37 
9NJ O19 O4  O 0 1 N N N 7.211  18.013 0.353  6.983  0.191  2.043  O19 9NJ 38 
9NJ O28 O5  O 0 1 N N N 9.019  16.786 0.761  7.838  -1.751 1.426  O28 9NJ 39 
9NJ H1  H1  H 0 1 N N N 14.378 23.070 4.558  -1.202 -2.548 -0.313 H1  9NJ 40 
9NJ H2  H2  H 0 1 N N N 15.760 26.359 4.401  0.095  0.107  -1.045 H2  9NJ 41 
9NJ H3  H3  H 0 1 N N N 12.140 23.454 6.547  -0.874 -0.035 -2.009 H3  9NJ 42 
9NJ H4  H4  H 0 1 N N N 10.570 19.270 -0.470 4.395  0.210  1.903  H4  9NJ 43 
9NJ H5  H5  H 0 1 N N N 11.174 18.392 0.977  5.091  0.975  0.455  H5  9NJ 44 
9NJ H6  H6  H 0 1 N N N 18.201 25.906 4.215  1.792  1.781  -1.729 H6  9NJ 45 
9NJ H7  H7  H 0 1 N N N 11.791 19.745 3.026  2.440  -1.331 1.685  H7  9NJ 46 
9NJ H8  H8  H 0 1 N N N 20.817 22.855 2.182  1.365  5.756  0.280  H8  9NJ 47 
9NJ H9  H9  H 0 1 N N N 19.337 22.081 2.843  2.240  6.320  -1.164 H9  9NJ 48 
9NJ H10 H10 H 0 1 N N N 19.346 22.712 1.162  0.485  6.031  -1.244 H10 9NJ 49 
9NJ H11 H11 H 0 1 N N N 14.569 21.741 -0.108 -1.507 5.069  1.834  H11 9NJ 50 
9NJ H12 H12 H 0 1 N N N 16.055 22.731 -0.303 -2.391 5.350  0.315  H12 9NJ 51 
9NJ H13 H13 H 0 1 N N N 15.976 21.473 0.977  -3.285 5.003  1.814  H13 9NJ 52 
9NJ H14 H14 H 0 1 N N N 10.795 27.511 1.608  -5.853 0.430  2.171  H14 9NJ 53 
9NJ H15 H15 H 0 1 N N N 8.290  25.160 4.166  -5.384 -3.765 1.542  H15 9NJ 54 
9NJ H16 H16 H 0 1 N N N 10.262 23.819 4.898  -3.197 -3.389 0.490  H16 9NJ 55 
9NJ H17 H17 H 0 1 N N N 13.849 21.726 6.980  1.215  -1.370 -1.979 H17 9NJ 56 
9NJ H18 H18 H 0 1 N N N 15.143 22.962 6.827  0.287  -2.831 -2.392 H18 9NJ 57 
9NJ H19 H19 H 0 1 N N N 12.914 22.900 8.925  0.477  -0.304 -4.093 H19 9NJ 58 
9NJ H20 H20 H 0 1 N N N 14.652 22.535 9.196  1.325  -1.836 -4.412 H20 9NJ 59 
9NJ H21 H21 H 0 1 N N N 15.273 24.829 8.671  -0.740 -1.661 -5.774 H21 9NJ 60 
9NJ H22 H22 H 0 1 N N N 13.985 24.845 9.922  -0.855 -3.001 -4.608 H22 9NJ 61 
9NJ H23 H23 H 0 1 N N N 13.658 26.568 8.093  -2.016 -0.205 -4.224 H23 9NJ 62 
9NJ H24 H24 H 0 1 N N N 12.289 25.418 8.260  -2.944 -1.666 -4.637 H24 9NJ 63 
9NJ H25 H25 H 0 1 N N N 14.521 25.338 6.160  -2.206 -2.733 -2.524 H25 9NJ 64 
9NJ H26 H26 H 0 1 N N N 12.792 25.740 5.885  -3.054 -1.200 -2.204 H26 9NJ 65 
9NJ H27 H27 H 0 1 N N N 12.105 22.611 2.527  1.429  -2.338 -0.863 H27 9NJ 66 
9NJ H28 H28 H 0 1 N N N 9.870  20.641 4.268  3.149  -3.556 0.850  H28 9NJ 67 
9NJ H29 H29 H 0 1 N N N 9.301  21.472 2.780  3.845  -2.790 -0.599 H29 9NJ 68 
9NJ H30 H30 H 0 1 N N N 8.079  19.353 3.076  4.688  -2.242 2.283  H30 9NJ 69 
9NJ H31 H31 H 0 1 N N N 9.625  18.445 3.178  5.593  -3.223 1.105  H31 9NJ 70 
9NJ H32 H32 H 0 1 N N N 8.558  19.991 0.753  5.800  -1.249 -0.381 H32 9NJ 71 
9NJ H33 H33 H 0 1 N N N 12.325 20.567 0.773  2.647  0.643  0.199  H33 9NJ 72 
9NJ H34 H34 H 0 1 N N N 10.749 21.426 0.720  3.551  -0.338 -0.979 H34 9NJ 73 
9NJ H35 H35 H 0 1 N N N 8.428  16.108 0.456  8.637  -1.533 1.925  H35 9NJ 74 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9NJ O19 C12 DOUB N N 1  
9NJ C35 O25 SING N N 2  
9NJ C22 C31 SING N N 3  
9NJ C22 C18 SING N N 4  
9NJ C12 O28 SING N N 5  
9NJ C12 C18 SING N N 6  
9NJ C31 C26 SING N N 7  
9NJ C18 C23 SING N N 8  
9NJ O25 C8  SING N N 9  
9NJ N9  C8  DOUB Y N 10 
9NJ N9  C15 SING Y N 11 
9NJ C8  C4  SING Y N 12 
9NJ C36 O32 SING N N 13 
9NJ C14 C5  DOUB Y N 14 
9NJ C14 C21 SING Y N 15 
9NJ N3  C5  SING Y N 16 
9NJ N3  C1  DOUB Y N 17 
9NJ F29 C21 SING N N 18 
9NJ C26 N11 SING N N 19 
9NJ C26 C30 SING N N 20 
9NJ O32 C15 SING N N 21 
9NJ C23 C30 SING N N 22 
9NJ C5  C7  SING Y N 23 
9NJ C15 C24 DOUB Y N 24 
9NJ C21 C27 DOUB Y N 25 
9NJ C4  C1  SING N N 26 
9NJ C4  C13 DOUB Y N 27 
9NJ C1  N2  SING Y N 28 
9NJ N11 C6  SING N N 29 
9NJ C24 C13 SING Y N 30 
9NJ C7  N2  SING Y N 31 
9NJ C7  C16 DOUB Y N 32 
9NJ C27 C16 SING Y N 33 
9NJ N2  C10 SING N N 34 
9NJ C6  C10 SING N N 35 
9NJ C6  O17 DOUB N N 36 
9NJ C10 C20 SING N N 37 
9NJ C20 C34 SING N N 38 
9NJ C20 C33 SING N N 39 
9NJ C34 C37 SING N N 40 
9NJ C33 C38 SING N N 41 
9NJ C37 C39 SING N N 42 
9NJ C38 C39 SING N N 43 
9NJ C10 H1  SING N N 44 
9NJ C13 H2  SING N N 45 
9NJ C20 H3  SING N N 46 
9NJ C22 H4  SING N N 47 
9NJ C22 H5  SING N N 48 
9NJ C24 H6  SING N N 49 
9NJ C26 H7  SING N N 50 
9NJ C36 H8  SING N N 51 
9NJ C36 H9  SING N N 52 
9NJ C36 H10 SING N N 53 
9NJ C35 H11 SING N N 54 
9NJ C35 H12 SING N N 55 
9NJ C35 H13 SING N N 56 
9NJ C14 H14 SING N N 57 
9NJ C27 H15 SING N N 58 
9NJ C16 H16 SING N N 59 
9NJ C33 H17 SING N N 60 
9NJ C33 H18 SING N N 61 
9NJ C38 H19 SING N N 62 
9NJ C38 H20 SING N N 63 
9NJ C39 H21 SING N N 64 
9NJ C39 H22 SING N N 65 
9NJ C37 H23 SING N N 66 
9NJ C37 H24 SING N N 67 
9NJ C34 H25 SING N N 68 
9NJ C34 H26 SING N N 69 
9NJ N11 H27 SING N N 70 
9NJ C30 H28 SING N N 71 
9NJ C30 H29 SING N N 72 
9NJ C23 H30 SING N N 73 
9NJ C23 H31 SING N N 74 
9NJ C18 H32 SING N N 75 
9NJ C31 H33 SING N N 76 
9NJ C31 H34 SING N N 77 
9NJ O28 H35 SING N N 78 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9NJ SMILES           ACDLabs              12.01 "n3c5c(n(C(C(=O)NC1CCC(CC1)C(O)=O)C2CCCCC2)c3c4ccc(OC)nc4OC)ccc(c5)F" 
9NJ InChI            InChI                1.03  
"InChI=1S/C29H35FN4O5/c1-38-24-15-13-21(28(33-24)39-2)26-32-22-16-19(30)10-14-23(22)34(26)25(17-6-4-3-5-7-17)27(35)31-20-11-8-18(9-12-20)29(36)37/h10,13-18,20,25H,3-9,11-12H2,1-2H3,(H,31,35)(H,36,37)/t18-,20-,25-/m0/s1" 
9NJ InChIKey         InChI                1.03  JHVYRIYZUSZRSR-KHOMTPLRSA-N 
9NJ SMILES_CANONICAL CACTVS               3.385 "COc1ccc(c(OC)n1)c2nc3cc(F)ccc3n2[C@@H](C4CCCCC4)C(=O)N[C@H]5CC[C@@H](CC5)C(O)=O" 
9NJ SMILES           CACTVS               3.385 "COc1ccc(c(OC)n1)c2nc3cc(F)ccc3n2[CH](C4CCCCC4)C(=O)N[CH]5CC[CH](CC5)C(O)=O" 
9NJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "COc1ccc(c(n1)OC)c2nc3cc(ccc3n2[C@@H](C4CCCCC4)C(=O)NC5CCC(CC5)C(=O)O)F" 
9NJ SMILES           "OpenEye OEToolkits" 2.0.6 "COc1ccc(c(n1)OC)c2nc3cc(ccc3n2C(C4CCCCC4)C(=O)NC5CCC(CC5)C(=O)O)F" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9NJ "SYSTEMATIC NAME" ACDLabs              12.01 "trans-4-({(2S)-2-cyclohexyl-2-[2-(2,6-dimethoxypyridin-3-yl)-5-fluoro-1H-benzimidazol-1-yl]acetyl}amino)cyclohexane-1-carboxylic acid" 
9NJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "4-[[(2~{S})-2-cyclohexyl-2-[2-(2,6-dimethoxypyridin-3-yl)-5-fluoranyl-benzimidazol-1-yl]ethanoyl]amino]cyclohexane-1-carboxylic acid"  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9NJ "Create component" 2017-05-19 RCSB 
9NJ "Initial release"  2017-07-05 RCSB 
# 
