data_9LJ
# 
_chem_comp.id                                    9LJ 
_chem_comp.name                                  "(2S)-2-[2-(4-chlorophenyl)-5,6-difluoro-1H-benzimidazol-1-yl]-N-(2-cyanophenyl)-2-cyclohexylacetamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H23 Cl F2 N4 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-05-19 
_chem_comp.pdbx_modified_date                    2017-06-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        504.958 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9LJ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5Q0S 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9LJ C4   C1  C  0 1 Y N N 11.010 26.658 2.475 4.034  2.436  1.104  C4   9LJ 1  
9LJ C7   C2  C  0 1 Y N N 12.102 25.869 2.840 2.753  2.127  0.634  C7   9LJ 2  
9LJ C8   C3  C  0 1 Y N N 11.945 24.879 3.809 2.461  0.811  0.234  C8   9LJ 3  
9LJ C10  C4  C  0 1 Y N N 14.043 24.945 3.050 0.675  2.095  -0.021 C10  9LJ 4  
9LJ C13  C5  C  0 1 Y N N 15.799 23.478 2.131 -1.406 1.942  -1.382 C13  9LJ 5  
9LJ C15  C6  C  0 1 Y N N 18.120 23.890 2.474 -3.262 3.392  -0.949 C15  9LJ 6  
9LJ C17  C7  C  0 1 Y N N 16.499 25.384 3.407 -1.288 3.572  0.395  C17  9LJ 7  
9LJ C20  C8  C  0 1 N N N 13.533 23.489 6.323 1.332  -1.508 -0.910 C20  9LJ 8  
9LJ C21  C9  C  0 1 N N N 12.864 21.843 4.391 -0.668 -0.721 0.326  C21  9LJ 9  
9LJ C24  C10 C  0 1 N N N 14.401 22.529 7.148 0.526  -2.737 -1.338 C24  9LJ 10 
9LJ C26  C11 C  0 1 N N N 14.781 24.275 8.917 2.478  -3.555 -2.666 C26  9LJ 11 
9LJ C28  C12 C  0 1 N N N 13.958 24.947 6.620 2.335  -1.148 -2.008 C28  9LJ 12 
9LJ C1   C13 C  0 1 Y N N 9.803  26.412 3.105 4.994  1.451  1.172  C1   9LJ 13 
9LJ C2   C14 C  0 1 Y N N 9.667  25.421 4.071 4.700  0.150  0.776  C2   9LJ 14 
9LJ C3   C15 C  0 1 Y N N 10.729 24.628 4.447 3.440  -0.170 0.309  C3   9LJ 15 
9LJ N11  N1  N  0 1 Y N N 13.421 25.894 2.375 1.627  2.859  0.455  N11  9LJ 16 
9LJ N9   N2  N  0 1 Y N N 13.213 24.293 3.941 1.141  0.817  -0.175 N9   9LJ 17 
9LJ C19  C16 C  0 1 N N S 13.621 23.170 4.822 0.383  -0.331 -0.681 C19  9LJ 18 
9LJ C25  C17 C  0 1 N N N 14.350 22.848 8.642 1.476  -3.914 -1.567 C25  9LJ 19 
9LJ C27  C18 C  0 1 N N N 13.933 25.265 8.128 3.284  -2.326 -2.238 C27  9LJ 20 
9LJ O23  O1  O  0 1 N N N 12.601 20.960 5.201 -0.625 -0.273 1.453  O23  9LJ 21 
9LJ N22  N3  N  0 1 N N N 12.548 21.788 3.074 -1.656 -1.568 -0.024 N22  9LJ 22 
9LJ C29  C19 C  0 1 Y N N 11.876 20.762 2.354 -2.631 -1.926 0.906  C29  9LJ 23 
9LJ C30  C20 C  0 1 Y N N 12.586 19.588 2.007 -3.236 -3.190 0.843  C30  9LJ 24 
9LJ C31  C21 C  0 1 Y N N 11.954 18.565 1.299 -4.211 -3.536 1.781  C31  9LJ 25 
9LJ C32  C22 C  0 1 Y N N 10.624 18.693 0.932 -4.574 -2.635 2.760  C32  9LJ 26 
9LJ C33  C23 C  0 1 Y N N 9.917  19.834 1.262 -3.974 -1.388 2.819  C33  9LJ 27 
9LJ C34  C24 C  0 1 Y N N 10.532 20.874 1.970 -3.004 -1.034 1.902  C34  9LJ 28 
9LJ C35  C25 C  0 1 N N N 13.966 19.441 2.385 -2.855 -4.121 -0.177 C35  9LJ 29 
9LJ N36  N4  N  0 1 N N N 15.060 19.359 2.701 -2.553 -4.859 -0.986 N36  9LJ 30 
9LJ C12  C26 C  0 1 Y N N 15.469 24.615 2.867 -0.697 2.544  -0.342 C12  9LJ 31 
9LJ C14  C27 C  0 1 Y N N 17.121 23.114 1.934 -2.683 2.368  -1.680 C14  9LJ 32 
9LJ C16  C28 C  0 1 Y N N 17.829 25.025 3.210 -2.564 3.993  0.085  C16  9LJ 33 
9LJ CL18 CL1 CL 0 0 N N N 19.784 23.427 2.224 -4.868 3.928  -1.334 CL18 9LJ 34 
9LJ F6   F1  F  0 1 N N N 8.460  25.233 4.652 5.652  -0.806 0.848  F6   9LJ 35 
9LJ F5   F2  F  0 1 N N N 8.727  27.151 2.776 6.231  1.750  1.626  F5   9LJ 36 
9LJ H1   H1  H  0 1 N N N 11.104 27.432 1.728 4.270  3.445  1.409  H1   9LJ 37 
9LJ H2   H2  H  0 1 N N N 15.012 22.872 1.708 -0.953 1.146  -1.956 H2   9LJ 38 
9LJ H3   H3  H  0 1 N N N 16.263 26.266 3.983 -0.744 4.041  1.201  H3   9LJ 39 
9LJ H4   H4  H  0 1 N N N 12.487 23.367 6.640 1.868  -1.729 0.013  H4   9LJ 40 
9LJ H5   H5  H  0 1 N N N 14.040 21.502 6.992 -0.188 -2.993 -0.556 H5   9LJ 41 
9LJ H6   H6  H  0 1 N N N 15.443 22.608 6.804 -0.009 -2.516 -2.261 H6   9LJ 42 
9LJ H7   H7  H  0 1 N N N 15.835 24.394 8.627 3.155  -4.394 -2.829 H7   9LJ 43 
9LJ H8   H8  H  0 1 N N N 14.670 24.483 9.991 1.943  -3.334 -3.589 H8   9LJ 44 
9LJ H9   H9  H  0 1 N N N 14.979 25.102 6.242 1.799  -0.928 -2.932 H9   9LJ 45 
9LJ H10  H10 H  0 1 N N N 13.268 25.630 6.103 2.909  -0.273 -1.704 H10  9LJ 46 
9LJ H11  H11 H  0 1 N N N 10.626 23.855 5.194 3.217  -1.181 0.003  H11  9LJ 47 
9LJ H12  H12 H  0 1 N N N 14.685 22.980 4.615 -0.098 -0.062 -1.622 H12  9LJ 48 
9LJ H13  H13 H  0 1 N N N 13.320 22.709 9.003 2.011  -4.135 -0.644 H13  9LJ 49 
9LJ H14  H14 H  0 1 N N N 15.022 22.161 9.178 0.902  -4.790 -1.872 H14  9LJ 50 
9LJ H15  H15 H  0 1 N N N 14.326 26.280 8.287 3.820  -2.546 -1.314 H15  9LJ 51 
9LJ H16  H16 H  0 1 N N N 12.895 25.214 8.488 3.999  -2.070 -3.020 H16  9LJ 52 
9LJ H17  H17 H  0 1 N N N 12.827 22.581 2.532 -1.688 -1.930 -0.924 H17  9LJ 53 
9LJ H18  H18 H  0 1 N N N 12.502 17.672 1.037 -4.682 -4.507 1.738  H18  9LJ 54 
9LJ H19  H19 H  0 1 N N N 10.138 17.898 0.386 -5.332 -2.902 3.481  H19  9LJ 55 
9LJ H20  H20 H  0 1 N N N 8.881  19.924 0.971 -4.265 -0.689 3.589  H20  9LJ 56 
9LJ H21  H21 H  0 1 N N N 9.971  21.762 2.220 -2.542 -0.060 1.954  H21  9LJ 57 
9LJ H22  H22 H  0 1 N N N 17.365 22.230 1.363 -3.233 1.903  -2.485 H22  9LJ 58 
9LJ H23  H23 H  0 1 N N N 18.624 25.625 3.627 -3.020 4.792  0.651  H23  9LJ 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9LJ C32  C33 DOUB Y N 1  
9LJ C32  C31 SING Y N 2  
9LJ C33  C34 SING Y N 3  
9LJ C31  C30 DOUB Y N 4  
9LJ C14  C13 DOUB Y N 5  
9LJ C14  C15 SING Y N 6  
9LJ C34  C29 DOUB Y N 7  
9LJ C30  C29 SING Y N 8  
9LJ C30  C35 SING N N 9  
9LJ C13  C12 SING Y N 10 
9LJ CL18 C15 SING N N 11 
9LJ C29  N22 SING N N 12 
9LJ N11  C7  SING Y N 13 
9LJ N11  C10 DOUB Y N 14 
9LJ C35  N36 TRIP N N 15 
9LJ C15  C16 DOUB Y N 16 
9LJ C4   C7  DOUB Y N 17 
9LJ C4   C1  SING Y N 18 
9LJ F5   C1  SING N N 19 
9LJ C7   C8  SING Y N 20 
9LJ C12  C10 SING N N 21 
9LJ C12  C17 DOUB Y N 22 
9LJ C10  N9  SING Y N 23 
9LJ N22  C21 SING N N 24 
9LJ C1   C2  DOUB Y N 25 
9LJ C16  C17 SING Y N 26 
9LJ C8   N9  SING Y N 27 
9LJ C8   C3  DOUB Y N 28 
9LJ N9   C19 SING N N 29 
9LJ C2   C3  SING Y N 30 
9LJ C2   F6  SING N N 31 
9LJ C21  C19 SING N N 32 
9LJ C21  O23 DOUB N N 33 
9LJ C19  C20 SING N N 34 
9LJ C20  C28 SING N N 35 
9LJ C20  C24 SING N N 36 
9LJ C28  C27 SING N N 37 
9LJ C24  C25 SING N N 38 
9LJ C27  C26 SING N N 39 
9LJ C25  C26 SING N N 40 
9LJ C4   H1  SING N N 41 
9LJ C13  H2  SING N N 42 
9LJ C17  H3  SING N N 43 
9LJ C20  H4  SING N N 44 
9LJ C24  H5  SING N N 45 
9LJ C24  H6  SING N N 46 
9LJ C26  H7  SING N N 47 
9LJ C26  H8  SING N N 48 
9LJ C28  H9  SING N N 49 
9LJ C28  H10 SING N N 50 
9LJ C3   H11 SING N N 51 
9LJ C19  H12 SING N N 52 
9LJ C25  H13 SING N N 53 
9LJ C25  H14 SING N N 54 
9LJ C27  H15 SING N N 55 
9LJ C27  H16 SING N N 56 
9LJ N22  H17 SING N N 57 
9LJ C31  H18 SING N N 58 
9LJ C32  H19 SING N N 59 
9LJ C33  H20 SING N N 60 
9LJ C34  H21 SING N N 61 
9LJ C14  H22 SING N N 62 
9LJ C16  H23 SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9LJ SMILES           ACDLabs              12.01 "c5c1c(n(c(n1)c2ccc(cc2)Cl)C(C3CCCCC3)C(=O)Nc4c(C#N)cccc4)cc(c5F)F"                                                                                                                         
9LJ InChI            InChI                1.03  "InChI=1S/C28H23ClF2N4O/c29-20-12-10-18(11-13-20)27-33-24-14-21(30)22(31)15-25(24)35(27)26(17-6-2-1-3-7-17)28(36)34-23-9-5-4-8-19(23)16-32/h4-5,8-15,17,26H,1-3,6-7H2,(H,34,36)/t26-/m0/s1" 
9LJ InChIKey         InChI                1.03  KQOKFDLIIQSPMA-SANMLTNESA-N                                                                                                                                                                 
9LJ SMILES_CANONICAL CACTVS               3.385 "Fc1cc2nc(n([C@@H](C3CCCCC3)C(=O)Nc4ccccc4C#N)c2cc1F)c5ccc(Cl)cc5"                                                                                                                          
9LJ SMILES           CACTVS               3.385 "Fc1cc2nc(n([CH](C3CCCCC3)C(=O)Nc4ccccc4C#N)c2cc1F)c5ccc(Cl)cc5"                                                                                                                            
9LJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc(c(c1)C#N)NC(=O)[C@H](C2CCCCC2)n3c4cc(c(cc4nc3c5ccc(cc5)Cl)F)F"                                                                                                                       
9LJ SMILES           "OpenEye OEToolkits" 2.0.6 "c1ccc(c(c1)C#N)NC(=O)C(C2CCCCC2)n3c4cc(c(cc4nc3c5ccc(cc5)Cl)F)F"                                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9LJ "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-2-[2-(4-chlorophenyl)-5,6-difluoro-1H-benzimidazol-1-yl]-N-(2-cyanophenyl)-2-cyclohexylacetamide"           
9LJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-2-[2-(4-chlorophenyl)-5,6-bis(fluoranyl)benzimidazol-1-yl]-~{N}-(2-cyanophenyl)-2-cyclohexyl-ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9LJ "Create component" 2017-05-19 RCSB 
9LJ "Initial release"  2017-07-05 RCSB 
# 
