data_80J
# 
_chem_comp.id                                    80J 
_chem_comp.name                                  
;2'-deoxy-2'-fluorocytidine 5'-(tetrahydrogen triphosphate)
;
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H15 F N3 O13 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-08-24 
_chem_comp.pdbx_modified_date                    2023-05-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        485.147 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     80J 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8FV9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
80J "C1'" C1  C 0 1 N N R -9.809  2.696 16.868 3.983  -0.173 -1.190 "C1'" 80J 1  
80J C2    C2  C 0 1 N N N -7.819  2.589 15.452 4.941  0.962  0.736  C2    80J 2  
80J "C2'" C3  C 0 1 N N R -10.005 3.627 18.112 4.629  -1.544 -0.912 "C2'" 80J 3  
80J "C3'" C4  C 0 1 N N R -11.355 3.165 18.634 3.538  -2.329 -0.144 "C3'" 80J 4  
80J C4    C5  C 0 1 N N N -7.364  4.045 13.719 6.284  2.834  0.554  C4    80J 5  
80J "C4'" C6  C 0 1 N N R -11.916 2.388 17.675 2.249  -1.562 -0.536 "C4'" 80J 6  
80J C5    C7  C 0 1 N N N -8.540  4.734 13.999 6.155  2.787  -0.850 C5    80J 7  
80J "C5'" C8  C 0 1 N N N -13.328 2.758 17.291 1.164  -1.755 0.525  "C5'" 80J 8  
80J C6    C9  C 0 1 N N N -9.341  4.286 15.053 5.411  1.802  -1.407 C6    80J 9  
80J F2    F1  F 0 1 N N N -9.013  3.404 18.979 4.943  -2.190 -2.113 F2    80J 10 
80J N1    N1  N 0 1 N N N -8.945  3.225 15.767 4.799  0.891  -0.600 N1    80J 11 
80J N3    N2  N 0 1 N N N -7.035  2.987 14.457 5.674  1.922  1.299  N3    80J 12 
80J N4    N3  N 0 1 N N N -6.496  4.462 12.631 7.034  3.823  1.147  N4    80J 13 
80J O1A   O1  O 0 1 N N N -15.402 0.681 14.747 -1.762 -2.538 1.295  O1A   80J 14 
80J O1B   O2  O 0 1 N N N -14.364 4.332 14.385 -4.557 -0.178 1.656  O1B   80J 15 
80J O1G   O3  O 0 1 N N N -17.963 2.439 11.518 -7.306 0.586  -0.418 O1G   80J 16 
80J O2    O4  O 0 1 N N N -7.480  1.637 16.088 4.386  0.138  1.444  O2    80J 17 
80J O2A   O5  O 0 1 N N N -15.896 0.963 17.167 -1.174 -0.302 2.309  O2A   80J 18 
80J O2B   O6  O 0 1 N N N -16.598 5.328 14.949 -4.798 -1.872 -0.199 O2B   80J 19 
80J O2G   O7  O 0 1 N N N -18.805 2.833 13.812 -6.158 2.686  0.384  O2G   80J 20 
80J "O3'" O8  O 0 1 N N N -11.164 2.337 19.869 3.478  -3.686 -0.588 "O3'" 80J 21 
80J O3A   O9  O 0 1 N N N -16.152 2.967 15.721 -2.591 -0.474 0.101  O3A   80J 22 
80J O3B   O10 O 0 1 N N N -16.397 3.511 13.138 -4.800 0.710  -0.694 O3B   80J 23 
80J O3G   O11 O 0 1 N N N -18.446 4.766 12.264 -6.415 2.159  -2.179 O3G   80J 24 
80J "O4'" O12 O 0 1 N N N -10.996 2.567 16.384 2.679  -0.185 -0.585 "O4'" 80J 25 
80J "O5'" O13 O 0 1 N N N -13.694 1.965 16.214 -0.047 -1.136 0.085  "O5'" 80J 26 
80J PA    P1  P 0 1 N N N -15.274 1.585 15.950 -1.401 -1.143 0.955  PA    80J 27 
80J PB    P2  P 0 1 N N N -15.851 4.082 14.562 -4.194 -0.448 0.247  PB    80J 28 
80J PG    P3  P 0 1 N N N -17.964 3.398 12.692 -6.194 1.515  -0.720 PG    80J 29 
80J H1    H1  H 0 1 N N N -9.396  1.739 17.219 3.892  -0.017 -2.265 H1    80J 30 
80J H2    H2  H 0 1 N N N -10.063 4.675 17.783 5.521  -1.428 -0.296 H2    80J 31 
80J H3    H3  H 0 1 N N N -11.977 4.042 18.868 3.708  -2.280 0.931  H3    80J 32 
80J H4    H4  H 0 1 N N N -11.892 1.326 17.961 1.891  -1.888 -1.513 H4    80J 33 
80J H5    H5  H 0 1 N N N -8.827  5.596 13.415 6.645  3.522  -1.470 H5    80J 34 
80J H6    H6  H 0 1 N N N -13.373 3.820 17.007 0.992  -2.820 0.680  H6    80J 35 
80J H7    H7  H 0 1 N N N -14.006 2.576 18.138 1.486  -1.298 1.461  H7    80J 36 
80J H8    H8  H 0 1 N N N -10.267 4.789 15.288 5.297  1.745  -2.480 H8    80J 37 
80J H9    H9  H 0 1 N N N -5.656  3.955 12.439 7.476  4.490  0.599  H9    80J 38 
80J H10   H10 H 0 1 N N N -6.739  5.256 12.074 7.121  3.853  2.112  H10   80J 39 
80J H11   H11 H 0 1 N N N -16.253 0.112 16.941 -0.934 0.623  2.161  H11   80J 40 
80J H12   H12 H 0 1 N N N -15.990 6.055 15.013 -4.598 -2.115 -1.113 H12   80J 41 
80J H13   H13 H 0 1 N N N -19.160 1.992 13.549 -5.452 3.333  0.248  H13   80J 42 
80J H14   H14 H 0 1 N N N -10.771 2.870 20.550 4.296  -4.183 -0.445 H14   80J 43 
80J H15   H15 H 0 1 N N N -18.654 4.753 11.337 -7.237 2.660  -2.268 H15   80J 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
80J O1G   PG    DOUB N N 1  
80J O3G   PG    SING N N 2  
80J N4    C4    SING N N 3  
80J PG    O3B   SING N N 4  
80J PG    O2G   SING N N 5  
80J O3B   PB    SING N N 6  
80J C4    C5    SING N N 7  
80J C4    N3    DOUB N N 8  
80J C5    C6    DOUB N N 9  
80J O1B   PB    DOUB N N 10 
80J N3    C2    SING N N 11 
80J PB    O2B   SING N N 12 
80J PB    O3A   SING N N 13 
80J O1A   PA    DOUB N N 14 
80J C6    N1    SING N N 15 
80J C2    N1    SING N N 16 
80J C2    O2    DOUB N N 17 
80J O3A   PA    SING N N 18 
80J N1    "C1'" SING N N 19 
80J PA    "O5'" SING N N 20 
80J PA    O2A   SING N N 21 
80J "O5'" "C5'" SING N N 22 
80J "O4'" "C1'" SING N N 23 
80J "O4'" "C4'" SING N N 24 
80J "C1'" "C2'" SING N N 25 
80J "C5'" "C4'" SING N N 26 
80J "C4'" "C3'" SING N N 27 
80J "C2'" "C3'" SING N N 28 
80J "C2'" F2    SING N N 29 
80J "C3'" "O3'" SING N N 30 
80J "C1'" H1    SING N N 31 
80J "C2'" H2    SING N N 32 
80J "C3'" H3    SING N N 33 
80J "C4'" H4    SING N N 34 
80J C5    H5    SING N N 35 
80J "C5'" H6    SING N N 36 
80J "C5'" H7    SING N N 37 
80J C6    H8    SING N N 38 
80J N4    H9    SING N N 39 
80J N4    H10   SING N N 40 
80J O2A   H11   SING N N 41 
80J O2B   H12   SING N N 42 
80J O2G   H13   SING N N 43 
80J "O3'" H14   SING N N 44 
80J O3G   H15   SING N N 45 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
80J SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC1OC(N2C=CC(N)=NC2=O)C(F)C1O"                                                                                                                                     
80J InChI            InChI                1.06  "InChI=1S/C9H15FN3O13P3/c10-6-7(14)4(24-8(6)13-2-1-5(11)12-9(13)15)3-23-28(19,20)26-29(21,22)25-27(16,17)18/h1-2,4,6-8,14H,3H2,(H,19,20)(H,21,22)(H2,11,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1" 
80J InChIKey         InChI                1.06  YKEIUAOIVAXJRI-XVFCMESISA-N                                                                                                                                                                     
80J SMILES_CANONICAL CACTVS               3.385 "NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]2F"                                                                                                           
80J SMILES           CACTVS               3.385 "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]2F"                                                                                                                 
80J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)F"                                                                                                               
80J SMILES           "OpenEye OEToolkits" 2.0.7 "C1=CN(C(=O)N=C1N)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)F"                                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
80J "SYSTEMATIC NAME" ACDLabs              12.01 
;2'-deoxy-2'-fluorocytidine 5'-(tetrahydrogen triphosphate)
;
80J "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[[(2~{R},3~{R},4~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-4-fluoranyl-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
80J "Create component" 2021-08-24 RCSB 
80J "Initial release"  2023-05-24 RCSB 
# 
