data_7KJ
# 
_chem_comp.id                                    7KJ 
_chem_comp.name                                  "(7~{R})-7-[(3,5-dimethyl-1,2-oxazol-4-yl)methylamino]-3-[(4-methoxynaphthalen-1-yl)methyl]-5,6,7,8-tetrahydro-[1]benzothiolo[2,3-d]pyrimidin-4-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H28 N4 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-11-04 
_chem_comp.pdbx_modified_date                    2017-02-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        500.612 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     7KJ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5MAT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
7KJ C01  C1  C 0 1 Y N N -4.155 5.749  18.598 -7.814 1.636  0.353  C01  7KJ 1  
7KJ C02  C2  C 0 1 Y N N -2.936 6.628  18.926 -8.435 1.044  1.411  C02  7KJ 2  
7KJ C03  C3  C 0 1 Y N N -2.795 8.021  18.273 -7.815 0.022  2.126  C03  7KJ 3  
7KJ C04  C4  C 0 1 Y N N -3.873 8.519  17.300 -6.570 -0.414 1.789  C04  7KJ 4  
7KJ C05  C5  C 0 1 Y N N -5.088 7.624  16.983 -5.898 0.174  0.704  C05  7KJ 5  
7KJ C06  C6  C 0 1 Y N N -5.234 6.263  17.617 -6.532 1.209  -0.027 C06  7KJ 6  
7KJ C07  C7  C 0 1 Y N N -6.171 8.144  16.001 -4.612 -0.250 0.326  C07  7KJ 7  
7KJ C08  C8  C 0 1 Y N N -7.378 7.258  15.680 -3.989 0.341  -0.731 C08  7KJ 8  
7KJ C09  C9  C 0 1 Y N N -7.527 5.876  16.320 -4.606 1.362  -1.449 C09  7KJ 9  
7KJ C10  C10 C 0 1 Y N N -6.464 5.369  17.297 -5.857 1.798  -1.116 C10  7KJ 10 
7KJ C11  C11 C 0 1 N N N -6.039 9.529  15.349 -3.925 -1.353 1.088  C11  7KJ 11 
7KJ C12  C12 C 0 1 N N N -8.427 9.926  14.500 -2.667 -2.594 -0.599 C12  7KJ 12 
7KJ C14  C13 C 0 1 N N N -7.834 3.548  18.117 -5.698 3.346  -2.913 C14  7KJ 13 
7KJ C16  C14 C 0 1 N N N -6.590 9.070  12.960 -1.516 -1.123 0.822  C16  7KJ 14 
7KJ C17  C15 C 0 1 Y N N -7.587 9.027  11.836 -0.303 -1.478 0.153  C17  7KJ 15 
7KJ C18  C16 C 0 1 Y N N -8.975 9.422  12.045 -0.376 -2.405 -0.877 C18  7KJ 16 
7KJ C20  C17 C 0 1 Y N N -7.396 8.588  10.301 1.054  -1.007 0.394  C20  7KJ 17 
7KJ C21  C18 C 0 1 Y N N -8.710 8.727  9.614  1.966  -1.552 -0.414 C21  7KJ 18 
7KJ C23  C19 C 0 1 N N N -8.734 8.355  8.112  3.451  -1.234 -0.370 C23  7KJ 19 
7KJ C24  C20 C 0 1 N N R -7.405 8.449  7.395  3.653  0.064  0.417  C24  7KJ 20 
7KJ C25  C21 C 0 1 N N N -6.305 7.634  8.128  2.898  -0.037 1.745  C25  7KJ 21 
7KJ C26  C22 C 0 1 N N N -6.134 8.084  9.546  1.394  0.015  1.471  C26  7KJ 22 
7KJ C28  C23 C 0 1 N N N -6.344 8.377  5.252  5.742  0.922  -0.456 C28  7KJ 23 
7KJ C29  C24 C 0 1 Y N N -6.518 8.048  3.774  7.206  1.107  -0.151 C29  7KJ 24 
7KJ C30  C25 C 0 1 Y N N -7.053 8.866  2.812  8.272  0.219  -0.426 C30  7KJ 25 
7KJ C33  C26 C 0 1 Y N N -6.154 6.880  3.179  7.807  2.164  0.445  C33  7KJ 26 
7KJ C34  C27 C 0 1 N N N -5.512 5.681  3.879  7.137  3.417  0.949  C34  7KJ 27 
7KJ C35  C28 C 0 1 N N N -7.589 10.273 3.028  8.175  -1.128 -1.095 C35  7KJ 28 
7KJ N15  N1  N 0 1 N N N -7.017 9.524  14.273 -2.667 -1.697 0.421  N15  7KJ 29 
7KJ N19  N2  N 0 1 N N N -9.403 9.872  13.384 -1.574 -2.933 -1.215 N19  7KJ 30 
7KJ N27  N3  N 0 1 N N N -7.528 7.967  6.012  5.085  0.261  0.679  N27  7KJ 31 
7KJ N31  N4  N 0 1 Y N N -7.022 8.209  1.652  9.353  0.796  0.013  N31  7KJ 32 
7KJ O13  O1  O 0 1 N N N -6.567 4.109  17.898 -6.445 2.796  -1.826 O13  7KJ 33 
7KJ O32  O2  O 0 1 Y N N -6.460 6.966  1.878  9.115  1.877  0.500  O32  7KJ 34 
7KJ O36  O3  O 0 1 N N N -5.468 8.746  12.770 -1.509 -0.317 1.737  O36  7KJ 35 
7KJ S22  S1  S 0 1 Y N N -9.756 9.251  10.661 1.227  -2.679 -1.539 S22  7KJ 36 
7KJ H011 H1  H 0 0 N N N -4.257 4.774  19.052 -8.307 2.427  -0.192 H011 7KJ 37 
7KJ H021 H2  H 0 0 N N N -2.181 6.272  19.611 -9.423 1.371  1.699  H021 7KJ 38 
7KJ H031 H3  H 0 0 N N N -1.941 8.642  18.500 -8.329 -0.431 2.961  H031 7KJ 39 
7KJ H041 H4  H 0 0 N N N -3.781 9.492  16.840 -6.101 -1.206 2.353  H041 7KJ 40 
7KJ H081 H5  H 0 0 N N N -8.133 7.613  14.994 -3.001 0.012  -1.017 H081 7KJ 41 
7KJ H091 H6  H 0 0 N N N -8.381 5.259  16.082 -4.089 1.813  -2.283 H091 7KJ 42 
7KJ H111 H7  H 0 0 N N N -5.024 9.675  14.950 -3.717 -1.018 2.104  H111 7KJ 43 
7KJ H112 H8  H 0 0 N N N -6.265 10.323 16.076 -4.571 -2.230 1.120  H112 7KJ 44 
7KJ H121 H9  H 0 0 N N N -8.743 10.258 15.478 -3.601 -3.042 -0.904 H121 7KJ 45 
7KJ H143 H10 H 0 0 N N N -7.722 2.563  18.594 -4.765 3.766  -2.536 H143 7KJ 46 
7KJ H141 H11 H 0 0 N N N -8.419 4.209  18.773 -5.477 2.562  -3.637 H141 7KJ 47 
7KJ H142 H12 H 0 0 N N N -8.355 3.432  17.155 -6.281 4.131  -3.394 H142 7KJ 48 
7KJ H232 H13 H 0 0 N N N -9.440 9.031  7.607  3.984  -2.047 0.122  H232 7KJ 49 
7KJ H231 H14 H 0 0 N N N -9.093 7.319  8.025  3.828  -1.110 -1.385 H231 7KJ 50 
7KJ H241 H15 H 0 0 N N N -7.092 9.503  7.380  3.267  0.904  -0.160 H241 7KJ 51 
7KJ H252 H16 H 0 0 N N N -6.586 6.571  8.123  3.146  -0.979 2.236  H252 7KJ 52 
7KJ H251 H17 H 0 0 N N N -5.351 7.763  7.596  3.180  0.796  2.389  H251 7KJ 53 
7KJ H262 H18 H 0 0 N N N -5.729 7.234  10.114 1.119  1.013  1.128  H262 7KJ 54 
7KJ H261 H19 H 0 0 N N N -5.402 8.905  9.544  0.848  -0.222 2.384  H261 7KJ 55 
7KJ H282 H20 H 0 0 N N N -5.463 7.845  5.640  5.281  1.895  -0.627 H282 7KJ 56 
7KJ H281 H21 H 0 0 N N N -6.198 9.461  5.367  5.632  0.306  -1.349 H281 7KJ 57 
7KJ H341 H22 H 0 0 N N N -5.333 4.881  3.146  6.840  3.277  1.988  H341 7KJ 58 
7KJ H343 H23 H 0 0 N N N -4.556 5.988  4.328  7.831  4.254  0.878  H343 7KJ 59 
7KJ H342 H24 H 0 0 N N N -6.186 5.313  4.667  6.254  3.625  0.344  H342 7KJ 60 
7KJ H352 H25 H 0 0 N N N -7.954 10.678 2.072  8.286  -1.007 -2.173 H352 7KJ 61 
7KJ H351 H26 H 0 0 N N N -8.416 10.243 3.753  8.965  -1.778 -0.720 H351 7KJ 62 
7KJ H353 H27 H 0 0 N N N -6.785 10.916 3.415  7.204  -1.572 -0.878 H353 7KJ 63 
7KJ H272 H28 H 0 0 N N N -8.347 8.359  5.593  5.536  -0.615 0.899  H272 7KJ 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
7KJ N31 O32  SING Y N 1  
7KJ N31 C30  DOUB Y N 2  
7KJ O32 C33  SING Y N 3  
7KJ C30 C35  SING N N 4  
7KJ C30 C29  SING Y N 5  
7KJ C33 C29  DOUB Y N 6  
7KJ C33 C34  SING N N 7  
7KJ C29 C28  SING N N 8  
7KJ C28 N27  SING N N 9  
7KJ N27 C24  SING N N 10 
7KJ C24 C23  SING N N 11 
7KJ C24 C25  SING N N 12 
7KJ C23 C21  SING N N 13 
7KJ C25 C26  SING N N 14 
7KJ C26 C20  SING N N 15 
7KJ C21 C20  DOUB Y N 16 
7KJ C21 S22  SING Y N 17 
7KJ C20 C17  SING Y N 18 
7KJ S22 C18  SING Y N 19 
7KJ C17 C18  DOUB Y N 20 
7KJ C17 C16  SING N N 21 
7KJ C18 N19  SING N N 22 
7KJ O36 C16  DOUB N N 23 
7KJ C16 N15  SING N N 24 
7KJ N19 C12  DOUB N N 25 
7KJ N15 C12  SING N N 26 
7KJ N15 C11  SING N N 27 
7KJ C11 C07  SING N N 28 
7KJ C08 C07  DOUB Y N 29 
7KJ C08 C09  SING Y N 30 
7KJ C07 C05  SING Y N 31 
7KJ C09 C10  DOUB Y N 32 
7KJ C05 C04  DOUB Y N 33 
7KJ C05 C06  SING Y N 34 
7KJ C10 C06  SING Y N 35 
7KJ C10 O13  SING N N 36 
7KJ C04 C03  SING Y N 37 
7KJ C06 C01  DOUB Y N 38 
7KJ O13 C14  SING N N 39 
7KJ C03 C02  DOUB Y N 40 
7KJ C01 C02  SING Y N 41 
7KJ C01 H011 SING N N 42 
7KJ C02 H021 SING N N 43 
7KJ C03 H031 SING N N 44 
7KJ C04 H041 SING N N 45 
7KJ C08 H081 SING N N 46 
7KJ C09 H091 SING N N 47 
7KJ C11 H111 SING N N 48 
7KJ C11 H112 SING N N 49 
7KJ C12 H121 SING N N 50 
7KJ C14 H143 SING N N 51 
7KJ C14 H141 SING N N 52 
7KJ C14 H142 SING N N 53 
7KJ C23 H232 SING N N 54 
7KJ C23 H231 SING N N 55 
7KJ C24 H241 SING N N 56 
7KJ C25 H252 SING N N 57 
7KJ C25 H251 SING N N 58 
7KJ C26 H262 SING N N 59 
7KJ C26 H261 SING N N 60 
7KJ C28 H282 SING N N 61 
7KJ C28 H281 SING N N 62 
7KJ C34 H341 SING N N 63 
7KJ C34 H343 SING N N 64 
7KJ C34 H342 SING N N 65 
7KJ C35 H352 SING N N 66 
7KJ C35 H351 SING N N 67 
7KJ C35 H353 SING N N 68 
7KJ N27 H272 SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
7KJ InChI            InChI                1.03  "InChI=1S/C28H28N4O3S/c1-16-23(17(2)35-31-16)13-29-19-9-10-22-25(12-19)36-27-26(22)28(33)32(15-30-27)14-18-8-11-24(34-3)21-7-5-4-6-20(18)21/h4-8,11,15,19,29H,9-10,12-14H2,1-3H3/t19-/m1/s1" 
7KJ InChIKey         InChI                1.03  HBGRZTNWJBBJHU-LJQANCHMSA-N                                                                                                                                                                  
7KJ SMILES_CANONICAL CACTVS               3.385 "COc1ccc(CN2C=Nc3sc4C[C@@H](CCc4c3C2=O)NCc5c(C)onc5C)c6ccccc16"                                                                                                                              
7KJ SMILES           CACTVS               3.385 "COc1ccc(CN2C=Nc3sc4C[CH](CCc4c3C2=O)NCc5c(C)onc5C)c6ccccc16"                                                                                                                                
7KJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1c(c(on1)C)CN[C@@H]2CCc3c(sc4c3C(=O)N(C=N4)Cc5ccc(c6c5cccc6)OC)C2"                                                                                                                        
7KJ SMILES           "OpenEye OEToolkits" 2.0.6 "Cc1c(c(on1)C)CNC2CCc3c(sc4c3C(=O)N(C=N4)Cc5ccc(c6c5cccc6)OC)C2"                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
7KJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(7~{R})-7-[(3,5-dimethyl-1,2-oxazol-4-yl)methylamino]-3-[(4-methoxynaphthalen-1-yl)methyl]-5,6,7,8-tetrahydro-[1]benzothiolo[2,3-d]pyrimidin-4-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
7KJ "Create component" 2016-11-04 RCSB 
7KJ "Initial release"  2017-02-08 RCSB 
# 
