data_79J
#

_chem_comp.id                                   79J
_chem_comp.name                                 "4-O-acetyl-5-acetamido-3,5-dideoxy-L-glycero-alpha-D-galacto-non-2-ulopyranosonic acid"
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C13 H21 N O10"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;4-O-acetyl-5-(acetylamino)-3,5-dideoxy-L-glycero-alpha-D-galacto-non-2-ulopyranosonic acid;
4-O-acetyl-5-acetamido-3,5-dideoxy-L-glycero-alpha-D-galacto-non-2-ulosonic acid;
4-O-acetyl-5-acetamido-3,5-dideoxy-L-glycero-D-galacto-non-2-ulosonic acid;
4-O-acetyl-5-acetamido-3,5-dideoxy-L-glycero-galacto-non-2-ulosonic acid
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-09-16
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       351.307
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    79J
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5T96
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  79J  "4-O-acetyl-5-(acetylamino)-3,5-dideoxy-L-glycero-alpha-D-galacto-non-2-ulopyranosonic acid"  PDB  ?  
2  79J  "4-O-acetyl-5-acetamido-3,5-dideoxy-L-glycero-alpha-D-galacto-non-2-ulosonic acid"            PDB  ?  
3  79J  "4-O-acetyl-5-acetamido-3,5-dideoxy-L-glycero-D-galacto-non-2-ulosonic acid"                  PDB  ?  
4  79J  "4-O-acetyl-5-acetamido-3,5-dideoxy-L-glycero-galacto-non-2-ulosonic acid"                    PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
79J  C1    C1   C  0  1  N  N  N  21.968  13.313   2.027   0.131   2.555  -0.855  C1    79J   1  
79J  C10   C10  C  0  1  N  N  N  21.270  19.523   0.655  -1.624  -2.810  -0.248  C10   79J   2  
79J  C11   C11  C  0  1  N  N  N  22.226  20.716   0.507  -1.976  -3.951  -1.168  C11   79J   3  
79J  O1A   O1B  O  0  1  N  N  N  23.117  13.757   1.782   0.469   3.683  -1.125  O1A   79J   4  
79J  C2    C2   C  0  1  N  N  R  20.815  14.051   1.437   0.228   2.059   0.565  C2    79J   5  
79J  C3    C3   C  0  1  N  N  N  20.407  15.120   2.457  -1.139   1.542   1.019  C3    79J   6  
79J  C4    C4   C  0  1  N  N  S  21.102  16.466   2.298  -1.546   0.356   0.139  C4    79J   7  
79J  O4    O4   O  0  1  N  N  N  20.469  17.398   3.122  -2.807  -0.189   0.610  O4    79J   8  
79J  C5    C5   C  0  1  N  N  R  20.967  16.964   0.868  -0.460  -0.722   0.221  C5    79J   9  
79J  C6    C6   C  0  1  N  N  R  21.615  15.907  -0.020   0.881  -0.117  -0.203  C6    79J  10  
79J  C7    C7   C  0  1  N  N  R  21.404  16.289  -1.499   1.982  -1.171  -0.067  C7    79J  11  
79J  C8    C8   C  0  1  N  N  S  21.678  15.126  -2.432   3.339  -0.532  -0.368  C8    79J  12  
79J  C9    C9   C  0  1  N  N  N  22.909  14.410  -1.944   4.451  -1.552  -0.111  C9    79J  13  
79J  O10   O10  O  0  1  N  N  N  20.110  19.731   0.747  -2.080  -2.774   0.875  O10   79J  14  
79J  N5    N5   N  0  1  N  N  N  21.768  18.165   0.714  -0.802  -1.831  -0.674  N5    79J  15  
79J  C     C    C  0  1  N  N  N  21.279  18.256   3.861  -3.928   0.325   0.080  C     79J  16  
79J  O     O    O  0  1  N  N  N  22.461  18.264   3.694  -3.858   1.200  -0.749  O     79J  17  
79J  CH3   CH3  C  0  1  N  N  N  20.608  19.142   4.903  -5.274  -0.191   0.520  CH3   79J  18  
79J  O1B   O1A  O  0  1  N  N  N  21.687  12.254   2.717  -0.335   1.745  -1.818  O1B   79J  19  
79J  O2    O2   O  0  1  N  Y  N  19.930  12.939   1.308   0.639   3.131   1.417  O2    79J  20  
79J  O6    O6   O  0  1  N  N  N  21.161  14.590   0.192   1.184   1.000   0.636  O6    79J  21  
79J  O7    O7   O  0  1  N  N  N  20.107  16.742  -1.772   1.984  -1.688   1.266  O7    79J  22  
79J  O8    O8   O  0  1  N  N  N  22.002  15.646  -3.710   3.530   0.604   0.478  O8    79J  23  
79J  O9    O9   O  0  1  N  N  N  23.893  15.209  -2.490   5.707  -0.995  -0.503  O9    79J  24  
79J  H111  H1   H  0  0  N  N  N  21.648  21.652   0.509  -1.251  -4.755  -1.044  H111  79J  25  
79J  H113  H2   H  0  0  N  N  N  22.937  20.722   1.346  -2.973  -4.319  -0.925  H113  79J  26  
79J  H112  H3   H  0  0  N  N  N  22.778  20.628  -0.440  -1.960  -3.603  -2.201  H112  79J  27  
79J  H32   H4   H  0  1  N  N  N  19.323  15.283   2.364  -1.080   1.220   2.059  H32   79J  28  
79J  H31   H5   H  0  1  N  N  N  20.635  14.736   3.462  -1.879   2.337   0.925  H31   79J  29  
79J  H4    H6   H  0  1  N  N  N  22.167  16.363   2.553  -1.655   0.688  -0.893  H4    79J  30  
79J  H5    H7   H  0  1  N  N  N  19.913  17.124   0.596  -0.387  -1.089   1.245  H5    79J  31  
79J  H6    H8   H  0  1  N  N  N  22.698  15.941   0.170   0.820   0.213  -1.240  H6    79J  32  
79J  H7    H9   H  0  1  N  N  N  22.123  17.086  -1.738   1.798  -1.982  -0.771  H7    79J  33  
79J  H8    H10  H  0  1  N  N  N  20.816  14.444  -2.467   3.369  -0.217  -1.411  H8    79J  34  
79J  H92   H11  H  0  1  N  N  N  22.960  13.381  -2.329   4.478  -1.800   0.950  H92   79J  35  
79J  H91   H12  H  0  1  N  N  N  22.961  14.394  -0.845   4.257  -2.454  -0.691  H91   79J  36  
79J  HN5   H13  H  0  1  N  N  N  22.758  18.043   0.642  -0.437  -1.859  -1.572  HN5   79J  37  
79J  H14   H14  H  0  1  N  N  N  21.371  19.739   5.424  -5.392  -0.031   1.592  H14   79J  38  
79J  H15   H15  H  0  1  N  N  N  19.893  19.815   4.407  -6.060   0.342  -0.015  H15   79J  39  
79J  H16   H16  H  0  1  N  N  N  20.075  18.513   5.631  -5.344  -1.257   0.302  H16   79J  40  
79J  HO1B  H17  H  0  0  N  N  N  22.492  11.850   3.020  -0.382   2.109  -2.713  HO1B  79J  41  
79J  HO2   H18  H  0  1  N  Y  N  19.718  12.601   2.170   1.499   3.508   1.187  HO2   79J  42  
79J  HO7   H19  H  0  1  N  Y  N  19.900  17.474  -1.203   2.143  -1.020   1.947  HO7   79J  43  
79J  HO8   H20  H  0  1  N  Y  N  21.252  16.110  -4.063   3.515   0.397   1.423  HO8   79J  44  
79J  HO9   H21  H  0  1  N  Y  N  24.747  14.865  -2.256   6.459  -1.588  -0.368  HO9   79J  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
79J  O8   C8    SING  N  N   1  
79J  O9   C9    SING  N  N   2  
79J  C8   C9    SING  N  N   3  
79J  C8   C7    SING  N  N   4  
79J  O7   C7    SING  N  N   5  
79J  C7   C6    SING  N  N   6  
79J  C6   O6    SING  N  N   7  
79J  C6   C5    SING  N  N   8  
79J  O6   C2    SING  N  N   9  
79J  C11  C10   SING  N  N  10  
79J  C10  N5    SING  N  N  11  
79J  C10  O10   DOUB  N  N  12  
79J  N5   C5    SING  N  N  13  
79J  C5   C4    SING  N  N  14  
79J  O2   C2    SING  N  N  15  
79J  C2   C1    SING  N  N  16  
79J  C2   C3    SING  N  N  17  
79J  O1A  C1    DOUB  N  N  18  
79J  C1   O1B   SING  N  N  19  
79J  C4   C3    SING  N  N  20  
79J  C4   O4    SING  N  N  21  
79J  O4   C     SING  N  N  22  
79J  O    C     DOUB  N  N  23  
79J  C    CH3   SING  N  N  24  
79J  C11  H111  SING  N  N  25  
79J  C11  H113  SING  N  N  26  
79J  C11  H112  SING  N  N  27  
79J  C3   H32   SING  N  N  28  
79J  C3   H31   SING  N  N  29  
79J  C4   H4    SING  N  N  30  
79J  C5   H5    SING  N  N  31  
79J  C6   H6    SING  N  N  32  
79J  C7   H7    SING  N  N  33  
79J  C8   H8    SING  N  N  34  
79J  C9   H92   SING  N  N  35  
79J  C9   H91   SING  N  N  36  
79J  N5   HN5   SING  N  N  37  
79J  CH3  H14   SING  N  N  38  
79J  CH3  H15   SING  N  N  39  
79J  CH3  H16   SING  N  N  40  
79J  O1B  HO1B  SING  N  N  41  
79J  O2   HO2   SING  N  N  42  
79J  O7   HO7   SING  N  N  43  
79J  O8   HO8   SING  N  N  44  
79J  O9   HO9   SING  N  N  45  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
79J  SMILES            ACDLabs               12.01  "C(O)(=O)C1(CC(OC(C)=O)C(C(O1)C(C(CO)O)O)NC(=O)C)O"  
79J  InChI             InChI                 1.03   "InChI=1S/C13H21NO10/c1-5(16)14-9-8(23-6(2)17)3-13(22,12(20)21)24-11(9)10(19)7(18)4-15/h7-11,15,18-19,22H,3-4H2,1-2H3,(H,14,16)(H,20,21)/t7-,8-,9+,10+,11+,13+/m0/s1"  
79J  InChIKey          InChI                 1.03   LVBIMVQYUKOENY-DQBXORCPSA-N  
79J  SMILES_CANONICAL  CACTVS                3.385  "CC(=O)N[C@@H]1[C@H](C[C@@](O)(O[C@H]1[C@H](O)[C@@H](O)CO)C(O)=O)OC(C)=O"  
79J  SMILES            CACTVS                3.385  "CC(=O)N[CH]1[CH](C[C](O)(O[CH]1[CH](O)[CH](O)CO)C(O)=O)OC(C)=O"  
79J  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@H](CO)O)O)(C(=O)O)O)OC(=O)C"  
79J  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(=O)NC1C(CC(OC1C(C(CO)O)O)(C(=O)O)O)OC(=O)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
79J  "SYSTEMATIC NAME"  ACDLabs               12.01  "4-O-acetyl-5-(acetylamino)-3,5-dideoxy-L-glycero-alpha-D-galacto-non-2-ulopyranosonic acid"  
79J  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  
;(2~{R},4~{S},5~{R},6~{R})-5-acetamido-4-acetyloxy-2-oxidanyl-6-[(1~{R},2~{S})-1,2,3-tris(oxidanyl)propyl]oxane-2-carbox
ylic acid
;
  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
79J  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
79J  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
79J  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
79J  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  ketose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
79J  "Create component"          2016-09-16  RCSB  
79J  "Initial release"           2017-03-22  RCSB  
79J  "Other modification"        2020-07-03  RCSB  
79J  "Modify name"               2020-07-17  RCSB  
79J  "Modify synonyms"           2020-07-17  RCSB  
79J  "Modify internal type"      2020-07-17  RCSB  
79J  "Modify linking type"       2020-07-17  RCSB  
79J  "Modify atom id"            2020-07-17  RCSB  
79J  "Modify component atom id"  2020-07-17  RCSB  
79J  "Modify leaving atom flag"  2020-07-17  RCSB  
##
