data_6MJ
#

_chem_comp.id                                   6MJ
_chem_comp.name                                 "methyl beta-D-xylopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H12 O5"
_chem_comp.mon_nstd_parent_comp_id              XYP
_chem_comp.pdbx_synonyms                        "methyl beta-D-xyloside; methyl D-xyloside; methyl xyloside"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-05-09
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       164.156
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    6MJ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5JRN
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  6MJ  "methyl beta-D-xyloside"  PDB  ?  
2  6MJ  "methyl D-xyloside"       PDB  ?  
3  6MJ  "methyl xyloside"         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6MJ  C01  C01  C  0  1  N  N  N  16.614  32.450  22.554  -3.484   0.669   0.168  C01  6MJ   1  
6MJ  O1   O02  O  0  1  N  N  N  15.645  31.439  22.420  -2.461  -0.215  -0.296  O1   6MJ   2  
6MJ  C1   C03  C  0  1  N  N  R  14.506  31.634  23.210  -1.159   0.088   0.208  C1   6MJ   3  
6MJ  C2   C04  C  0  1  N  N  R  13.319  31.931  22.250  -0.171  -0.988  -0.251  C2   6MJ   4  
6MJ  C3   C05  C  0  1  N  N  S  11.973  31.823  22.984   1.233  -0.625   0.242  C3   6MJ   5  
6MJ  C4   C06  C  0  1  N  N  R  11.871  30.441  23.657   1.603   0.765  -0.284  C4   6MJ   6  
6MJ  C5   C07  C  0  1  N  N  N  13.090  30.234  24.586   0.547   1.774   0.176  C5   6MJ   7  
6MJ  O5   O08  O  0  1  N  N  N  14.339  30.483  23.986  -0.739   1.360  -0.290  O5   6MJ   8  
6MJ  O4   O09  O  0  1  N  N  N  10.702  30.437  24.419   2.881   1.145   0.229  O4   6MJ   9  
6MJ  O3   O10  O  0  1  N  N  N  10.953  31.888  22.033   2.173  -1.586  -0.243  O3   6MJ  10  
6MJ  O2   O11  O  0  1  N  N  N  13.462  33.269  21.876  -0.556  -2.253   0.293  O2   6MJ  11  
6MJ  H1A  H1   H  0  1  N  N  N  17.473  32.224  21.904  -4.442   0.373  -0.259  H1A  6MJ  12  
6MJ  H2A  H2   H  0  1  N  N  N  16.178  33.417  22.262  -3.540   0.622   1.255  H2A  6MJ  13  
6MJ  H3A  H3   H  0  1  N  N  N  16.949  32.500  23.600  -3.249   1.689  -0.140  H3A  6MJ  14  
6MJ  H1   H4   H  0  1  N  N  N  14.644  32.511  23.860  -1.187   0.115   1.297  H1   6MJ  15  
6MJ  H2   H5   H  0  1  N  N  N  13.345  31.246  21.390  -0.172  -1.044  -1.339  H2   6MJ  16  
6MJ  H3   H6   H  0  1  N  N  N  11.889  32.618  23.740   1.247  -0.618   1.332  H3   6MJ  17  
6MJ  H4   H7   H  0  1  N  N  N  11.858  29.656  22.887   1.639   0.745  -1.373  H4   6MJ  18  
6MJ  H51  H8   H  0  1  N  N  N  12.983  30.911  25.447   0.541   1.823   1.265  H51  6MJ  19  
6MJ  H52  H9   H  0  1  N  N  N  13.080  29.191  24.936   0.782   2.757  -0.231  H52  6MJ  20  
6MJ  HO4  H10  H  0  1  N  Y  N  10.607  29.596  24.850   3.179   2.017  -0.064  HO4  6MJ  21  
6MJ  HO3  H11  H  0  1  N  Y  N  10.110  31.823  22.467   3.085  -1.417   0.031  HO3  6MJ  22  
6MJ  HO2  H12  H  0  1  N  Y  N  14.285  33.383  21.416  -1.437  -2.546   0.023  HO2  6MJ  23  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6MJ  O2   C2   SING  N  N   1  
6MJ  O3   C3   SING  N  N   2  
6MJ  C2   C3   SING  N  N   3  
6MJ  C2   C1   SING  N  N   4  
6MJ  O1   C01  SING  N  N   5  
6MJ  O1   C1   SING  N  N   6  
6MJ  C3   C4   SING  N  N   7  
6MJ  C1   O5   SING  N  N   8  
6MJ  C4   O4   SING  N  N   9  
6MJ  C4   C5   SING  N  N  10  
6MJ  O5   C5   SING  N  N  11  
6MJ  C01  H1A  SING  N  N  12  
6MJ  C01  H2A  SING  N  N  13  
6MJ  C01  H3A  SING  N  N  14  
6MJ  C1   H1   SING  N  N  15  
6MJ  C2   H2   SING  N  N  16  
6MJ  C3   H3   SING  N  N  17  
6MJ  C4   H4   SING  N  N  18  
6MJ  C5   H51  SING  N  N  19  
6MJ  C5   H52  SING  N  N  20  
6MJ  O4   HO4  SING  N  N  21  
6MJ  O3   HO3  SING  N  N  22  
6MJ  O2   HO2  SING  N  N  23  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6MJ  SMILES            ACDLabs               12.01  "COC1OCC(C(C1O)O)O"  
6MJ  InChI             InChI                 1.03   "InChI=1S/C6H12O5/c1-10-6-5(9)4(8)3(7)2-11-6/h3-9H,2H2,1H3/t3-,4+,5-,6-/m1/s1"  
6MJ  InChIKey          InChI                 1.03   ZBDGHWFPLXXWRD-JGWLITMVSA-N  
6MJ  SMILES_CANONICAL  CACTVS                3.385  "CO[C@@H]1OC[C@@H](O)[C@H](O)[C@H]1O"  
6MJ  SMILES            CACTVS                3.385  "CO[CH]1OC[CH](O)[CH](O)[CH]1O"  
6MJ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.4  "CO[C@H]1[C@@H]([C@H]([C@@H](CO1)O)O)O"  
6MJ  SMILES            "OpenEye OEToolkits"  2.0.4  "COC1C(C(C(CO1)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
6MJ  "SYSTEMATIC NAME"                      ACDLabs               12.01  "methyl beta-D-xylopyranoside"  
6MJ  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  2.0.4  "(2~{R},3~{R},4~{S},5~{R})-2-methoxyoxane-3,4,5-triol"  
6MJ  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    DXylp[1Me]b  
6MJ  "COMMON NAME"                          GMML                  1.0    1-methyl-b-D-xylopyranose  
#
_pdbx_chem_comp_related.comp_id            6MJ
_pdbx_chem_comp_related.related_comp_id    XYP
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  6MJ  C1   XYP  C1   "Carbohydrate core"  
 2  6MJ  C2   XYP  C2   "Carbohydrate core"  
 3  6MJ  C3   XYP  C3   "Carbohydrate core"  
 4  6MJ  C4   XYP  C4   "Carbohydrate core"  
 5  6MJ  C5   XYP  C5   "Carbohydrate core"  
 6  6MJ  O1   XYP  O1   "Carbohydrate core"  
 7  6MJ  O5   XYP  O5   "Carbohydrate core"  
 8  6MJ  O4   XYP  O4   "Carbohydrate core"  
 9  6MJ  O3   XYP  O3   "Carbohydrate core"  
10  6MJ  O2   XYP  O2   "Carbohydrate core"  
11  6MJ  HO4  XYP  HO4  "Carbohydrate core"  
12  6MJ  HO3  XYP  HO3  "Carbohydrate core"  
13  6MJ  HO2  XYP  HO2  "Carbohydrate core"  
14  6MJ  H1   XYP  H1   "Carbohydrate core"  
15  6MJ  H2   XYP  H2   "Carbohydrate core"  
16  6MJ  H3   XYP  H3   "Carbohydrate core"  
17  6MJ  H4   XYP  H4   "Carbohydrate core"  
18  6MJ  H51  XYP  H51  "Carbohydrate core"  
19  6MJ  H52  XYP  H52  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
6MJ  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
6MJ  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
6MJ  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
6MJ  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6MJ  "Create component"          2016-05-09  EBI   
6MJ  "Initial release"           2017-05-24  RCSB  
6MJ  "Other modification"        2020-07-03  RCSB  
6MJ  "Modify parent residue"     2020-07-17  RCSB  
6MJ  "Modify synonyms"           2020-07-17  RCSB  
6MJ  "Modify internal type"      2020-07-17  RCSB  
6MJ  "Modify linking type"       2020-07-17  RCSB  
6MJ  "Modify atom id"            2020-07-17  RCSB  
6MJ  "Modify component atom id"  2020-07-17  RCSB  
6MJ  "Modify leaving atom flag"  2020-07-17  RCSB  
##
